Gcaud2951.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2951.t1
Unique NameGcaud2951.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length170
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_368_length_28566_cov_4.066058contigNODE_368_length_28566_cov_4.066058:557..1066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog882.DVU_0130
Preferred namegph
PFAMsHAD_2
Max annot lvl28221|Deltaproteobacteria
KEGG rclassRC00017
KEGG koko:K01091
KEGG ReactionR01334
KEGG Pathwayko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130
Evalue1.35e-29
EggNOG OGsCOG0546@1|root,COG0546@2|Bacteria,1RDDY@1224|Proteobacteria,42T69@68525|delta/epsilon subdivisions,2WNN3@28221|Deltaproteobacteria,2MBSC@213115|Desulfovibrionales
EC3.1.3.18
DescriptionPFAM Haloacid dehalogenase domain protein hydrolase
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2951Gcaud2951Gracilaria caudata M_176_S67 malegeneNODE_368_length_28566_cov_4.066058 557..1066 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2951.t1.start1Gcaud2951.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_368_length_28566_cov_4.066058 557..559 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2951.t1.CDS1Gcaud2951.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_368_length_28566_cov_4.066058 557..1066 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2951.t1.exon1Gcaud2951.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_368_length_28566_cov_4.066058 557..1066 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2951.t1.stop1Gcaud2951.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_368_length_28566_cov_4.066058 1064..1066 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2951.t1Gcaud2951.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_368_length_28566_cov_4.066058 557..1066 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2951.t1 ID=Gcaud2951.t1|Name=Gcaud2951.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=170bp
MTRLLQLQTGEPPSPDLLQRAIELKLHFEATTPSRAAPFDGVRDMLLRLA
AAGVRMAVLSNKTHATVRRVVHAHFGDVPFVEVAGATDDAPLKPDPSVAL
RIARTQLEGVAPRECLFVGDTEVDMATALAAGMVPVAVPWGFRDAAQLAK
CGAAHVVNSPADICALLGC*
back to top

spliced messenger RNA

>Gcaud2951.t1 ID=Gcaud2951.t1|Name=Gcaud2951.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=510bp|location=Sequence derived from alignment at NODE_368_length_28566_cov_4.066058:557..1066+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCGGCTGCTGCAGCTGCAGACCGGCGAGCCGCCGTCGCCCGATCT
GCTGCAGCGCGCGATCGAGCTCAAGCTGCACTTCGAGGCTACCACGCCGT
CGCGCGCCGCGCCGTTCGACGGCGTGCGCGACATGCTACTGCGTCTGGCC
GCGGCCGGCGTGCGCATGGCGGTGCTGTCCAACAAGACGCACGCCACGGT
GCGGCGCGTGGTGCACGCGCACTTTGGCGACGTGCCGTTTGTGGAGGTGG
CCGGCGCCACCGACGACGCGCCGCTCAAGCCGGACCCCAGCGTGGCGCTG
CGCATCGCGCGCACGCAGCTGGAGGGAGTGGCGCCGCGCGAGTGTCTGTT
CGTGGGCGATACGGAGGTGGACATGGCCACAGCGCTGGCGGCCGGCATGG
TGCCGGTGGCCGTTCCGTGGGGCTTCCGCGACGCCGCGCAGCTGGCAAAG
TGCGGCGCCGCGCACGTGGTGAACTCGCCCGCCGACATCTGCGCGCTGCT
CGGGTGCTGA
back to top

protein sequence of Gcaud2951.t1

>Gcaud2951.t1 ID=Gcaud2951.t1|Name=Gcaud2951.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=170bp
MTRLLQLQTGEPPSPDLLQRAIELKLHFEATTPSRAAPFDGVRDMLLRLA
AAGVRMAVLSNKTHATVRRVVHAHFGDVPFVEVAGATDDAPLKPDPSVAL
RIARTQLEGVAPRECLFVGDTEVDMATALAAGMVPVAVPWGFRDAAQLAK
CGAAHVVNSPADICALLGC*
back to top

mRNA from alignment at NODE_368_length_28566_cov_4.066058:557..1066+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2951.t1 ID=Gcaud2951.t1|Name=Gcaud2951.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=510bp|location=Sequence derived from alignment at NODE_368_length_28566_cov_4.066058:557..1066+ (Gracilaria caudata M_176_S67 male)
ATGACGCGGCTGCTGCAGCTGCAGACCGGCGAGCCGCCGTCGCCCGATCT
GCTGCAGCGCGCGATCGAGCTCAAGCTGCACTTCGAGGCTACCACGCCGT
CGCGCGCCGCGCCGTTCGACGGCGTGCGCGACATGCTACTGCGTCTGGCC
GCGGCCGGCGTGCGCATGGCGGTGCTGTCCAACAAGACGCACGCCACGGT
GCGGCGCGTGGTGCACGCGCACTTTGGCGACGTGCCGTTTGTGGAGGTGG
CCGGCGCCACCGACGACGCGCCGCTCAAGCCGGACCCCAGCGTGGCGCTG
CGCATCGCGCGCACGCAGCTGGAGGGAGTGGCGCCGCGCGAGTGTCTGTT
CGTGGGCGATACGGAGGTGGACATGGCCACAGCGCTGGCGGCCGGCATGG
TGCCGGTGGCCGTTCCGTGGGGCTTCCGCGACGCCGCGCAGCTGGCAAAG
TGCGGCGCCGCGCACGTGGTGAACTCGCCCGCCGACATCTGCGCGCTGCT
CGGGTGCTGA
back to top

Coding sequence (CDS) from alignment at NODE_368_length_28566_cov_4.066058:557..1066+

>Gcaud2951.t1 ID=Gcaud2951.t1|Name=Gcaud2951.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=510bp|location=Sequence derived from alignment at NODE_368_length_28566_cov_4.066058:557..1066+ (Gracilaria caudata M_176_S67 male)
ATGACGCGGCTGCTGCAGCTGCAGACCGGCGAGCCGCCGTCGCCCGATCT
GCTGCAGCGCGCGATCGAGCTCAAGCTGCACTTCGAGGCTACCACGCCGT
CGCGCGCCGCGCCGTTCGACGGCGTGCGCGACATGCTACTGCGTCTGGCC
GCGGCCGGCGTGCGCATGGCGGTGCTGTCCAACAAGACGCACGCCACGGT
GCGGCGCGTGGTGCACGCGCACTTTGGCGACGTGCCGTTTGTGGAGGTGG
CCGGCGCCACCGACGACGCGCCGCTCAAGCCGGACCCCAGCGTGGCGCTG
CGCATCGCGCGCACGCAGCTGGAGGGAGTGGCGCCGCGCGAGTGTCTGTT
CGTGGGCGATACGGAGGTGGACATGGCCACAGCGCTGGCGGCCGGCATGG
TGCCGGTGGCCGTTCCGTGGGGCTTCCGCGACGCCGCGCAGCTGGCAAAG
TGCGGCGCCGCGCACGTGGTGAACTCGCCCGCCGACATCTGCGCGCTGCT
CGGGTGCTGA
back to top