Gcaud2947.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2947.t1
Unique Name	Gcaud2947.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	341

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_816_length_17601_cov_4.570017	contig	NODE_816_length_17601_cov_4.570017:10535..11557 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706517.1
PFAMs	FAD_binding_6,NAD_binding_1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02641
KEGG Pathway	ko00195,ko01100,map00195,map01100
GOs	GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009055,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009719,GO:0009725,GO:0009735,GO:0009767,GO:0009814,GO:0009817,GO:0009941,GO:0009987,GO:0010033,GO:0015979,GO:0016020,GO:0016491,GO:0019684,GO:0019904,GO:0022900,GO:0031967,GO:0031975,GO:0031976,GO:0031977,GO:0031984,GO:0032991,GO:0034357,GO:0042221,GO:0042651,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0045156,GO:0045157,GO:0048046,GO:0050832,GO:0050896,GO:0051704,GO:0051707,GO:0055035,GO:0055114,GO:0097159,GO:0098542,GO:0098796,GO:0098807,GO:1901363
Evalue	2.15e-139
EggNOG OGs	COG0369@1\|root,KOG1158@2759\|Eukaryota
EC	1.18.1.2
Description	NADPH-hemoprotein reductase activity
COG category	P
BRITE	ko00000,ko00001,ko00194,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2947	Gcaud2947	Gracilaria caudata M_176_S67 male	gene	NODE_816_length_17601_cov_4.570017 10535..11557 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2947.t1.start1	Gcaud2947.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_816_length_17601_cov_4.570017 10535..10537 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2947.t1.CDS1	Gcaud2947.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_816_length_17601_cov_4.570017 10535..11557 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2947.t1.exon1	Gcaud2947.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_816_length_17601_cov_4.570017 10535..11557 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2947.t1.stop1	Gcaud2947.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_816_length_17601_cov_4.570017 11555..11557 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2947.t1	Gcaud2947.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_816_length_17601_cov_4.570017 10535..11557 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_816_length_17601_cov_4.570017:10535..11557+
coding sequence from alignment at NODE_816_length_17601_cov_4.570017:10535..11557+

mRNA sequence

>Gcaud2947.t1 ID=Gcaud2947.t1|Name=Gcaud2947.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=341bp
MYGFVSAVPLVSANSSHVALAQRSSFVGATSFTVAQNARPASIRMAAVDK
KKVPINLFRPNKPYTATVVYNERIVGDDAPGETKHMIFNTDGNLPYLEGQ
SIGVIPPGIDAKGKPHKVRLYSIASTRHGDFGDGKTVSLSVKRLVYEDAE
GNEVRGVCSNHLCDLKAGDEVKISGPVGTAMLMPPDPNATIIMLATGTGV
APFRTYMRRAFSENNPEYKFTGTMWLFLGVPTSSTLLYQSEFEEMKANYP
DQVRLDYAISREQKDPKGNKMYLQNRMQEYEEELYELFQKDNTYVYMCGL
AGMEDGIDEFMSARFAKDGRNWVEYRKAMKKAKRWEVETY*

spliced messenger RNA

>Gcaud2947.t1 ID=Gcaud2947.t1|Name=Gcaud2947.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at NODE_816_length_17601_cov_4.570017:10535..11557+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGGATTCGTTTCTGCCGTGCCGCTGGTCTCCGCCAACAGCTCGCA
CGTTGCGCTTGCTCAGCGCTCCTCCTTTGTCGGTGCCACTTCTTTCACAG
TCGCTCAAAATGCTCGTCCTGCCTCTATTCGCATGGCCGCAGTTGATAAG
AAGAAGGTTCCCATCAACCTCTTCCGCCCCAACAAGCCGTACACTGCTAC
CGTTGTTTACAACGAGCGCATTGTGGGTGATGACGCGCCCGGAGAGACCA
AGCACATGATCTTCAACACCGATGGCAACCTGCCGTATCTGGAGGGCCAA
TCTATTGGCGTCATTCCGCCTGGAATTGACGCCAAGGGAAAGCCGCATAA
GGTTCGCCTATACTCGATTGCTTCTACTCGCCACGGCGATTTTGGTGACG
GTAAGACCGTCTCCTTGTCCGTCAAGCGTCTGGTTTATGAAGATGCTGAG
GGAAATGAGGTACGTGGTGTGTGCTCGAACCACCTGTGTGACCTCAAGGC
TGGAGATGAGGTCAAGATCTCTGGTCCTGTCGGAACTGCCATGCTCATGC
CGCCGGACCCCAACGCCACCATCATCATGCTTGCAACTGGTACTGGCGTT
GCTCCGTTCCGTACTTATATGCGTCGCGCCTTCTCTGAGAACAATCCTGA
GTACAAGTTCACAGGAACTATGTGGCTCTTCCTCGGAGTCCCCACATCAT
CCACTCTCCTGTACCAGTCAGAGTTTGAGGAGATGAAGGCGAACTACCCC
GATCAGGTTCGTCTTGACTACGCTATCTCCCGTGAACAGAAGGATCCGAA
AGGTAATAAGATGTACTTGCAAAACAGAATGCAGGAATATGAAGAAGAAC
TGTACGAATTGTTCCAAAAAGATAATACTTACGTGTACATGTGCGGATTG
GCTGGTATGGAAGATGGGATTGACGAGTTCATGTCTGCTAGATTTGCAAA
GGATGGTAGGAATTGGGTTGAGTATCGCAAGGCAATGAAGAAGGCCAAGC
GCTGGGAAGTGGAAACTTACTAG

protein sequence of Gcaud2947.t1

>Gcaud2947.t1 ID=Gcaud2947.t1|Name=Gcaud2947.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=341bp
MYGFVSAVPLVSANSSHVALAQRSSFVGATSFTVAQNARPASIRMAAVDK
KKVPINLFRPNKPYTATVVYNERIVGDDAPGETKHMIFNTDGNLPYLEGQ
SIGVIPPGIDAKGKPHKVRLYSIASTRHGDFGDGKTVSLSVKRLVYEDAE
GNEVRGVCSNHLCDLKAGDEVKISGPVGTAMLMPPDPNATIIMLATGTGV
APFRTYMRRAFSENNPEYKFTGTMWLFLGVPTSSTLLYQSEFEEMKANYP
DQVRLDYAISREQKDPKGNKMYLQNRMQEYEEELYELFQKDNTYVYMCGL
AGMEDGIDEFMSARFAKDGRNWVEYRKAMKKAKRWEVETY*

mRNA from alignment at NODE_816_length_17601_cov_4.570017:10535..11557+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2947.t1 ID=Gcaud2947.t1|Name=Gcaud2947.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at NODE_816_length_17601_cov_4.570017:10535..11557+ (Gracilaria caudata M_176_S67 male)
ATGTACGGATTCGTTTCTGCCGTGCCGCTGGTCTCCGCCAACAGCTCGCA
CGTTGCGCTTGCTCAGCGCTCCTCCTTTGTCGGTGCCACTTCTTTCACAG
TCGCTCAAAATGCTCGTCCTGCCTCTATTCGCATGGCCGCAGTTGATAAG
AAGAAGGTTCCCATCAACCTCTTCCGCCCCAACAAGCCGTACACTGCTAC
CGTTGTTTACAACGAGCGCATTGTGGGTGATGACGCGCCCGGAGAGACCA
AGCACATGATCTTCAACACCGATGGCAACCTGCCGTATCTGGAGGGCCAA
TCTATTGGCGTCATTCCGCCTGGAATTGACGCCAAGGGAAAGCCGCATAA
GGTTCGCCTATACTCGATTGCTTCTACTCGCCACGGCGATTTTGGTGACG
GTAAGACCGTCTCCTTGTCCGTCAAGCGTCTGGTTTATGAAGATGCTGAG
GGAAATGAGGTACGTGGTGTGTGCTCGAACCACCTGTGTGACCTCAAGGC
TGGAGATGAGGTCAAGATCTCTGGTCCTGTCGGAACTGCCATGCTCATGC
CGCCGGACCCCAACGCCACCATCATCATGCTTGCAACTGGTACTGGCGTT
GCTCCGTTCCGTACTTATATGCGTCGCGCCTTCTCTGAGAACAATCCTGA
GTACAAGTTCACAGGAACTATGTGGCTCTTCCTCGGAGTCCCCACATCAT
CCACTCTCCTGTACCAGTCAGAGTTTGAGGAGATGAAGGCGAACTACCCC
GATCAGGTTCGTCTTGACTACGCTATCTCCCGTGAACAGAAGGATCCGAA
AGGTAATAAGATGTACTTGCAAAACAGAATGCAGGAATATGAAGAAGAAC
TGTACGAATTGTTCCAAAAAGATAATACTTACGTGTACATGTGCGGATTG
GCTGGTATGGAAGATGGGATTGACGAGTTCATGTCTGCTAGATTTGCAAA
GGATGGTAGGAATTGGGTTGAGTATCGCAAGGCAATGAAGAAGGCCAAGC
GCTGGGAAGTGGAAACTTACTAG

Coding sequence (CDS) from alignment at NODE_816_length_17601_cov_4.570017:10535..11557+

>Gcaud2947.t1 ID=Gcaud2947.t1|Name=Gcaud2947.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1023bp|location=Sequence derived from alignment at NODE_816_length_17601_cov_4.570017:10535..11557+ (Gracilaria caudata M_176_S67 male)
ATGTACGGATTCGTTTCTGCCGTGCCGCTGGTCTCCGCCAACAGCTCGCA
CGTTGCGCTTGCTCAGCGCTCCTCCTTTGTCGGTGCCACTTCTTTCACAG
TCGCTCAAAATGCTCGTCCTGCCTCTATTCGCATGGCCGCAGTTGATAAG
AAGAAGGTTCCCATCAACCTCTTCCGCCCCAACAAGCCGTACACTGCTAC
CGTTGTTTACAACGAGCGCATTGTGGGTGATGACGCGCCCGGAGAGACCA
AGCACATGATCTTCAACACCGATGGCAACCTGCCGTATCTGGAGGGCCAA
TCTATTGGCGTCATTCCGCCTGGAATTGACGCCAAGGGAAAGCCGCATAA
GGTTCGCCTATACTCGATTGCTTCTACTCGCCACGGCGATTTTGGTGACG
GTAAGACCGTCTCCTTGTCCGTCAAGCGTCTGGTTTATGAAGATGCTGAG
GGAAATGAGGTACGTGGTGTGTGCTCGAACCACCTGTGTGACCTCAAGGC
TGGAGATGAGGTCAAGATCTCTGGTCCTGTCGGAACTGCCATGCTCATGC
CGCCGGACCCCAACGCCACCATCATCATGCTTGCAACTGGTACTGGCGTT
GCTCCGTTCCGTACTTATATGCGTCGCGCCTTCTCTGAGAACAATCCTGA
GTACAAGTTCACAGGAACTATGTGGCTCTTCCTCGGAGTCCCCACATCAT
CCACTCTCCTGTACCAGTCAGAGTTTGAGGAGATGAAGGCGAACTACCCC
GATCAGGTTCGTCTTGACTACGCTATCTCCCGTGAACAGAAGGATCCGAA
AGGTAATAAGATGTACTTGCAAAACAGAATGCAGGAATATGAAGAAGAAC
TGTACGAATTGTTCCAAAAAGATAATACTTACGTGTACATGTGCGGATTG
GCTGGTATGGAAGATGGGATTGACGAGTTCATGTCTGCTAGATTTGCAAA
GGATGGTAGGAATTGGGTTGAGTATCGCAAGGCAATGAAGAAGGCCAAGC
GCTGGGAAGTGGAAACTTACTAG