Gcaud2945.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2945.t1
Unique NameGcaud2945.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length82
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_816_length_17601_cov_4.570017contigNODE_816_length_17601_cov_4.570017:5856..6184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42345.XP_008808759.1
PFAMsApc13p
Max annot lvl35493|Streptophyta
KEGG koko:K12456
KEGG Pathwayko04110,ko04114,ko04120,ko04914,map04110,map04114,map04120,map04914
KEGG ModuleM00389
GOsGO:0000003,GO:0000151,GO:0000152,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005680,GO:0006139,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009555,GO:0009791,GO:0009987,GO:0010152,GO:0010229,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0021700,GO:0022414,GO:0031461,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048229,GO:0048367,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0061458,GO:0061614,GO:0071704,GO:0090304,GO:0090567,GO:0097659,GO:0099402,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Evalue1.18e-05
EggNOG OGs2E1FN@1|root,2S8ST@2759|Eukaryota,37WUQ@33090|Viridiplantae,3GKUA@35493|Streptophyta,3M1H0@4447|Liliopsida
DescriptionApc13p protein
COG categoryS
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2945Gcaud2945Gracilaria caudata M_176_S67 malegeneNODE_816_length_17601_cov_4.570017 5856..6184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2945.t1Gcaud2945.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_816_length_17601_cov_4.570017 5856..6184 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2945.t1.start1Gcaud2945.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_816_length_17601_cov_4.570017 5856..5858 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2945.t1.CDS1Gcaud2945.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_816_length_17601_cov_4.570017 5856..6078 +
Gcaud2945.t1.CDS2Gcaud2945.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_816_length_17601_cov_4.570017 6162..6184 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2945.t1.exon1Gcaud2945.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_816_length_17601_cov_4.570017 5856..6078 +
Gcaud2945.t1.exon2Gcaud2945.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_816_length_17601_cov_4.570017 6162..6184 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2945.t1.intron1Gcaud2945.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_816_length_17601_cov_4.570017 6079..6161 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2945.t1.stop1Gcaud2945.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_816_length_17601_cov_4.570017 6182..6184 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2945.t1 ID=Gcaud2945.t1|Name=Gcaud2945.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=82bp
MDMNFSAPIHQDPLLVIHIVDEEWATESLPTEDIELPPSVIPTIEDDDHA
AADEQENEDDKWNDMGLEDFPGLEKSGVNPR*
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spliced messenger RNA

>Gcaud2945.t1 ID=Gcaud2945.t1|Name=Gcaud2945.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=246bp|location=Sequence derived from alignment at NODE_816_length_17601_cov_4.570017:5856..6184+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATATGAATTTCAGTGCCCCAATTCACCAAGATCCTCTTCTCGTAAT
CCATATTGTCGACGAAGAATGGGCCACGGAATCTCTTCCAACAGAAGACA
TAGAACTGCCACCCTCCGTAATTCCCACAATtgaagatgatgatcacgca
gctgctgatgaacaagagaatgaagatgatAAGTGGAACGATATGGGTCT
GGAAGACTTTCCAGGCTTAGAAAAGTCAGGAGTGAACCCTCGCTAA
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protein sequence of Gcaud2945.t1

>Gcaud2945.t1 ID=Gcaud2945.t1|Name=Gcaud2945.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=82bp
MDMNFSAPIHQDPLLVIHIVDEEWATESLPTEDIELPPSVIPTIEDDDHA
AADEQENEDDKWNDMGLEDFPGLEKSGVNPR*
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mRNA from alignment at NODE_816_length_17601_cov_4.570017:5856..6184+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2945.t1 ID=Gcaud2945.t1|Name=Gcaud2945.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=329bp|location=Sequence derived from alignment at NODE_816_length_17601_cov_4.570017:5856..6184+ (Gracilaria caudata M_176_S67 male)
ATGGATATGAATTTCAGTGCCCCAATTCACCAAGATCCTCTTCTCGTAAT
CCATATTGTCGACGAAGAATGGGCCACGGAATCTCTTCCAACAGAAGACA
TAGAACTGCCACCCTCCGTAATTCCCACAATtgaagatgatgatcacgca
gctgctgatgaacaagagaatgaagatgatAAGTGGAACGATATGGGTCT
GGAAGACTTTCCAGGCTTAGAAAGTGCGCTACCAAACGGTTCAACTTTAC
CAACAACTGCCCCGACGTCAGGCCGTCGCTGACGAGTACGCAAATAACTT
TGATAGAGTCAGGAGTGAACCCTCGCTAA
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Coding sequence (CDS) from alignment at NODE_816_length_17601_cov_4.570017:5856..6184+

>Gcaud2945.t1 ID=Gcaud2945.t1|Name=Gcaud2945.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=246bp|location=Sequence derived from alignment at NODE_816_length_17601_cov_4.570017:5856..6184+ (Gracilaria caudata M_176_S67 male)
ATGGATATGAATTTCAGTGCCCCAATTCACCAAGATCCTCTTCTCGTAAT
CCATATTGTCGACGAAGAATGGGCCACGGAATCTCTTCCAACAGAAGACA
TAGAACTGCCACCCTCCGTAATTCCCACAATtgaagatgatgatcacgca
gctgctgatgaacaagagaatgaagatgatAAGTGGAACGATATGGGTCT
GGAAGACTTTCCAGGCTTAGAAAAGTCAGGAGTGAACCCTCGCTAA
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