Gcaud2943.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2943.t1
Unique Name	Gcaud2943.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	298

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_816_length_17601_cov_4.570017	contig	NODE_816_length_17601_cov_4.570017:3680..4573 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703222.1
Preferred name	mge1
PFAMs	GrpE
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03687
GOs	GO:0000166,GO:0000774,GO:0001405,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005759,GO:0006457,GO:0006605,GO:0006626,GO:0006790,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016226,GO:0017038,GO:0017076,GO:0019866,GO:0022607,GO:0030150,GO:0030234,GO:0030554,GO:0031090,GO:0031163,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0036094,GO:0042026,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044571,GO:0044743,GO:0045184,GO:0046907,GO:0050790,GO:0051082,GO:0051179,GO:0051186,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0060589,GO:0060590,GO:0065002,GO:0065007,GO:0065009,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0097159,GO:0098772,GO:0098796,GO:0098798,GO:0098800,GO:1901265,GO:1901363,GO:1990542
Evalue	7e-50
EggNOG OGs	COG0576@1\|root,KOG3003@2759\|Eukaryota
Description	adenyl-nucleotide exchange factor activity
COG category	O
BRITE	ko00000,ko03029,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2943	Gcaud2943	Gracilaria caudata M_176_S67 male	gene	NODE_816_length_17601_cov_4.570017 3680..4573 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2943.t1.start1	Gcaud2943.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_816_length_17601_cov_4.570017 3680..3682 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2943.t1.CDS1	Gcaud2943.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_816_length_17601_cov_4.570017 3680..4573 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2943.t1.exon1	Gcaud2943.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_816_length_17601_cov_4.570017 3680..4573 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2943.t1.stop1	Gcaud2943.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_816_length_17601_cov_4.570017 4571..4573 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2943.t1	Gcaud2943.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_816_length_17601_cov_4.570017 3680..4573 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_816_length_17601_cov_4.570017:3680..4573+
coding sequence from alignment at NODE_816_length_17601_cov_4.570017:3680..4573+

mRNA sequence

>Gcaud2943.t1 ID=Gcaud2943.t1|Name=Gcaud2943.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=298bp
MDCKQSPFAFAASVSALSSRTTEFCGCVSRFRPATTLQQPRGNRARVVAL
GAAPPPPPPSESDENRDQKEAPELETESNTQPERTAQSEPIDEVTADDIL
NSPSFLKKKLEIVQKELTEAQEAVEQGSNVVKEEKDKYVRLAADFENYRR
RSMEDLRKQDNKSTAKVCKEILGALDNFERAIAAVKPETEKEKSISSSYQ
AINKQLLEALTKLKVEPVDAVGEAFDPSFHEAIQKMESEDYKEDVVCQQF
QRGYRLGDVLIRPAIVGVSTGPGPVEDDGGDGEPIAFEDAEEIEQPV*

spliced messenger RNA

>Gcaud2943.t1 ID=Gcaud2943.t1|Name=Gcaud2943.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=894bp|location=Sequence derived from alignment at NODE_816_length_17601_cov_4.570017:3680..4573+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTGTAAACAATCACCATTTGCCTTTGCAGCATCCGTGAGTGCTCT
TTCCTCTCGCACAACCGAGTTTTGTGGCTGTGTTTCCAGATTCCGTCCTG
CAACAACTCTCCAGCAACCGAGGGGTAACAGAGCTCGCGTTGTAGCACTT
GGTGCAGCACCGCCACCGCCTCCTCCAAGCGAATCTGACGAGAACCGAGA
TCAGAAGGAGGCGCCGGAGTTGGAAACTGAGTCTAACACTCAACCAGAGC
GCACGGCTCAATCCGAGCCCATCGATGAGGTTACTGCCGATGACATTCTC
AATTCCCCGTCCTTCTTAAAAAAGAAACTGGAAATCGTGCAGAAAGAACT
CACCGAGGCTCAGGAAGCTGTCGAACAAGGTTCTAATGTGGTTAAAGAAG
AGAAAGATAAGTATGTTCGGTTAGCAGCAGACTTTGAGAATTACAGGAGA
CGGAGCATGGAGGACTTGAGAAAACAGGATAACAAGTCTACAGCAAAGGT
GTGTAAGGAAATTCTGGGGGCTCTTGATAATTTTGAACGGGCGATCGCTG
CGGTGAAACCCGAGACCGAAAAGGAGAAATCTATTTCCTCTAGTTACCAG
GCAATTAACAAGCAACTATTGGAGGCGCTTACCAAGCTAAAAGTAGAGCC
AGTAGATGCGGTTGGCGAGGCATTTGACCCGTCGTTTCACGAGGCAATCC
AGAAGATGGAGTCGGAGGATTACAAAGAAGATGTGGTTTGTCAGCAGTTC
CAAAGAGGATATCGCCTTGGCGACGTGCTTATTCGCCCGGCAATCGTGGG
AGTATCCACTGGACCAGGTCCAGTGGAAGACGATGGAGGAGACGGTGAGC
CGATTGCTTTCGAGGATGCAGAGGAAATTGAACAGCCTGTGTAA

protein sequence of Gcaud2943.t1

>Gcaud2943.t1 ID=Gcaud2943.t1|Name=Gcaud2943.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=298bp
MDCKQSPFAFAASVSALSSRTTEFCGCVSRFRPATTLQQPRGNRARVVAL
GAAPPPPPPSESDENRDQKEAPELETESNTQPERTAQSEPIDEVTADDIL
NSPSFLKKKLEIVQKELTEAQEAVEQGSNVVKEEKDKYVRLAADFENYRR
RSMEDLRKQDNKSTAKVCKEILGALDNFERAIAAVKPETEKEKSISSSYQ
AINKQLLEALTKLKVEPVDAVGEAFDPSFHEAIQKMESEDYKEDVVCQQF
QRGYRLGDVLIRPAIVGVSTGPGPVEDDGGDGEPIAFEDAEEIEQPV*

mRNA from alignment at NODE_816_length_17601_cov_4.570017:3680..4573+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2943.t1 ID=Gcaud2943.t1|Name=Gcaud2943.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=894bp|location=Sequence derived from alignment at NODE_816_length_17601_cov_4.570017:3680..4573+ (Gracilaria caudata M_176_S67 male)
ATGGATTGTAAACAATCACCATTTGCCTTTGCAGCATCCGTGAGTGCTCT
TTCCTCTCGCACAACCGAGTTTTGTGGCTGTGTTTCCAGATTCCGTCCTG
CAACAACTCTCCAGCAACCGAGGGGTAACAGAGCTCGCGTTGTAGCACTT
GGTGCAGCACCGCCACCGCCTCCTCCAAGCGAATCTGACGAGAACCGAGA
TCAGAAGGAGGCGCCGGAGTTGGAAACTGAGTCTAACACTCAACCAGAGC
GCACGGCTCAATCCGAGCCCATCGATGAGGTTACTGCCGATGACATTCTC
AATTCCCCGTCCTTCTTAAAAAAGAAACTGGAAATCGTGCAGAAAGAACT
CACCGAGGCTCAGGAAGCTGTCGAACAAGGTTCTAATGTGGTTAAAGAAG
AGAAAGATAAGTATGTTCGGTTAGCAGCAGACTTTGAGAATTACAGGAGA
CGGAGCATGGAGGACTTGAGAAAACAGGATAACAAGTCTACAGCAAAGGT
GTGTAAGGAAATTCTGGGGGCTCTTGATAATTTTGAACGGGCGATCGCTG
CGGTGAAACCCGAGACCGAAAAGGAGAAATCTATTTCCTCTAGTTACCAG
GCAATTAACAAGCAACTATTGGAGGCGCTTACCAAGCTAAAAGTAGAGCC
AGTAGATGCGGTTGGCGAGGCATTTGACCCGTCGTTTCACGAGGCAATCC
AGAAGATGGAGTCGGAGGATTACAAAGAAGATGTGGTTTGTCAGCAGTTC
CAAAGAGGATATCGCCTTGGCGACGTGCTTATTCGCCCGGCAATCGTGGG
AGTATCCACTGGACCAGGTCCAGTGGAAGACGATGGAGGAGACGGTGAGC
CGATTGCTTTCGAGGATGCAGAGGAAATTGAACAGCCTGTGTAA

Coding sequence (CDS) from alignment at NODE_816_length_17601_cov_4.570017:3680..4573+

>Gcaud2943.t1 ID=Gcaud2943.t1|Name=Gcaud2943.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=894bp|location=Sequence derived from alignment at NODE_816_length_17601_cov_4.570017:3680..4573+ (Gracilaria caudata M_176_S67 male)
ATGGATTGTAAACAATCACCATTTGCCTTTGCAGCATCCGTGAGTGCTCT
TTCCTCTCGCACAACCGAGTTTTGTGGCTGTGTTTCCAGATTCCGTCCTG
CAACAACTCTCCAGCAACCGAGGGGTAACAGAGCTCGCGTTGTAGCACTT
GGTGCAGCACCGCCACCGCCTCCTCCAAGCGAATCTGACGAGAACCGAGA
TCAGAAGGAGGCGCCGGAGTTGGAAACTGAGTCTAACACTCAACCAGAGC
GCACGGCTCAATCCGAGCCCATCGATGAGGTTACTGCCGATGACATTCTC
AATTCCCCGTCCTTCTTAAAAAAGAAACTGGAAATCGTGCAGAAAGAACT
CACCGAGGCTCAGGAAGCTGTCGAACAAGGTTCTAATGTGGTTAAAGAAG
AGAAAGATAAGTATGTTCGGTTAGCAGCAGACTTTGAGAATTACAGGAGA
CGGAGCATGGAGGACTTGAGAAAACAGGATAACAAGTCTACAGCAAAGGT
GTGTAAGGAAATTCTGGGGGCTCTTGATAATTTTGAACGGGCGATCGCTG
CGGTGAAACCCGAGACCGAAAAGGAGAAATCTATTTCCTCTAGTTACCAG
GCAATTAACAAGCAACTATTGGAGGCGCTTACCAAGCTAAAAGTAGAGCC
AGTAGATGCGGTTGGCGAGGCATTTGACCCGTCGTTTCACGAGGCAATCC
AGAAGATGGAGTCGGAGGATTACAAAGAAGATGTGGTTTGTCAGCAGTTC
CAAAGAGGATATCGCCTTGGCGACGTGCTTATTCGCCCGGCAATCGTGGG
AGTATCCACTGGACCAGGTCCAGTGGAAGACGATGGAGGAGACGGTGAGC
CGATTGCTTTCGAGGATGCAGAGGAAATTGAACAGCCTGTGTAA