Gcaud2940.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2940.t1
Unique Name	Gcaud2940.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	534

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3796_length_2931_cov_3.891197	contig	NODE_3796_length_2931_cov_3.891197:686..2287 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707886.1
Preferred name	ASH2L
PFAMs	SPRY
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K13113,ko:K14964,ko:K14967
KEGG Pathway	ko04212,ko04934,map04212,map04934
GOs	GO:0000003,GO:0000228,GO:0000723,GO:0000785,GO:0000790,GO:0000791,GO:0000902,GO:0000904,GO:0001067,GO:0001932,GO:0001933,GO:0002009,GO:0002164,GO:0002165,GO:0002168,GO:0002376,GO:0002520,GO:0002682,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005703,GO:0005719,GO:0006139,GO:0006259,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006348,GO:0006351,GO:0006355,GO:0006357,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007444,GO:0007472,GO:0007474,GO:0007476,GO:0007552,GO:0007560,GO:0007568,GO:0008013,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008284,GO:0008340,GO:0008757,GO:0009058,GO:0009059,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009791,GO:0009793,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009965,GO:0009987,GO:0010016,GO:0010033,GO:0010154,GO:0010228,GO:0010259,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0014070,GO:0016043,GO:0016070,GO:0016278,GO:0016279,GO:0016358,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018024,GO:0018130,GO:0018193,GO:0018205,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019787,GO:0019899,GO:0022008,GO:0022414,GO:0022607,GO:0030030,GO:0030097,GO:0030154,GO:0030182,GO:0031056,GO:0031057,GO:0031058,GO:0031060,GO:0031062,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031401,GO:0031490,GO:0031497,GO:0031507,GO:0031974,GO:0031981,GO:0032200,GO:0032259,GO:0032268,GO:0032269,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032774,GO:0032989,GO:0032990,GO:0032991,GO:0033043,GO:0033044,GO:0033127,GO:0033128,GO:0033554,GO:0033993,GO:0034401,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034968,GO:0035075,GO:0035097,GO:0035107,GO:0035114,GO:0035120,GO:0035209,GO:0035220,GO:0035239,GO:0035295,GO:0036211,GO:0036314,GO:0040029,GO:0042054,GO:0042127,GO:0042221,GO:0042325,GO:0042326,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043627,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044665,GO:0044666,GO:0045595,GO:0045637,GO:0045652,GO:0045814,GO:0045815,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0048096,GO:0048188,GO:0048189,GO:0048316,GO:0048366,GO:0048367,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048563,GO:0048569,GO:0048608,GO:0048666,GO:0048667,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048812,GO:0048813,GO:0048827,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051568,GO:0051569,GO:0051571,GO:0051716,GO:0060249,GO:0060255,GO:0060290,GO:0060322,GO:0060429,GO:0060562,GO:0060776,GO:0061458,GO:0061630,GO:0061659,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070647,GO:0070828,GO:0070868,GO:0070869,GO:0071103,GO:0071339,GO:0071704,GO:0071840,GO:0080090,GO:0080182,GO:0090304,GO:0097159,GO:0097305,GO:0097549,GO:0097659,GO:0098687,GO:0099402,GO:0120036,GO:0120039,GO:0140096,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901654,GO:1901700,GO:1902275,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1904837,GO:1905268,GO:1905269,GO:1905392,GO:1990188,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141,GO:2001251,GO:2001252
Evalue	3.94e-33
EggNOG OGs	KOG2626@1\|root,KOG2626@2759\|Eukaryota
Description	euchromatin binding
COG category	K
BRITE	ko00000,ko00001,ko03036,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2940	Gcaud2940	Gracilaria caudata M_176_S67 male	gene	NODE_3796_length_2931_cov_3.891197 686..2287 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2940.t1.stop1	Gcaud2940.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_3796_length_2931_cov_3.891197 686..688 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2940.t1.CDS1	Gcaud2940.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3796_length_2931_cov_3.891197 686..2287 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2940.t1.exon1	Gcaud2940.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3796_length_2931_cov_3.891197 686..2287 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2940.t1.start1	Gcaud2940.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3796_length_2931_cov_3.891197 2285..2287 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2940.t1	Gcaud2940.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3796_length_2931_cov_3.891197 686..2287 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3796_length_2931_cov_3.891197:686..2287-
coding sequence from alignment at NODE_3796_length_2931_cov_3.891197:686..2287-

mRNA sequence

>Gcaud2940.t1 ID=Gcaud2940.t1|Name=Gcaud2940.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=534bp
MGPVTDASSRSLTASASALPSRANHAPSTSPSPSTDADMAPDSAPSKRGA
HPADKPPLHKRPRRLTWYDFVRDAWKLLTARFPDRNQFKLSEIVDTVTNL
RGKEKKNSRWKKDVTVCIRSDTILTRSADTNEEYYVLRDLHYVPKPNAKR
PQPEKKKYLSDDDAKLAEEQLSRATIPSEWTTEAFKPVRLSTFDKSPAIQ
FVDDSSENKVKGFKGFRMARSTSGVCEGDWFFEAKVLSYEGDGAVRLGWS
QRRSDQETPVGFDVYGYGYRDRTGGFVHAARVRPYAEEYGVNDVIGCRIK
LPSLSDEQKQRIKESDHKWLHYRFINLLQGQPPPDCDIDIHGEAFVQFYK
NGKDMGVPAFFTEKEQTDSRPSRKNGAEKRPNEHVSKKSSTNTKRRLCAG
YFYPSISLFGNAVVEANFGPNFWFPLPEGSRPMSEAATDAPQPKPAKDTV
ESTQEQEHEAALGKDSLKEANDIRSANTESVTKSFTATVNNAHQNDTSHD
DNHEHNGPNNTRSRSGHVENGEKGDGXXXXATR*

spliced messenger RNA

>Gcaud2940.t1 ID=Gcaud2940.t1|Name=Gcaud2940.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1602bp|location=Sequence derived from alignment at NODE_3796_length_2931_cov_3.891197:686..2287- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCCCGTCACAGACGCCTCGTCGCGCTCGCTCACCGCCTCTGCCTC
CGCGTTGCCGTCGCGCGCCAACCATGCGCCGAGCACGTCACCGTCGCCGT
CCACCGACGCTGATATGGCGCCCGACTCCGCGCCTTCCAAACGCGGTGCA
CATCCCGCCGACAAACCTCCACTGCACAAACGCCCGCGACGACTCACGTG
GTATGACTTTGTGCGCGATGCGTGGAAGTTGTTGACTGCCCGTTTTCCTG
ACCGTAACCAATTCAAGCTGTCGGAGATTGTGGACACAGTCACCAATCTT
AGAGGAAAGGAAAAGAAAAACTCGCGATGGAAAAAGGACGTTACCGTCTG
CATTCGCAGCGATACTATCCTCACTCGCTCTGCCGATACCAACGAGGAGT
ACTACGTTCTTCGAGACCTGCATTATGTACCAAAGCCGAACGCCAAGAGG
CCCCAGCCAGAGAAGAAGAAGTACCTTTCGGATGACGATGCCAAACTGGC
TGAGGAGCAATTGTCGCGAGCTACAATTCCATCGGAATGGACCACGGAGG
CCTTCAAACCCGTTCGTCTTAGTACCTTTGACAAGTCGCCAGCCATTCAA
TTCGTAGATGACTCAAGCGAGAACAAGGTTAAGGGCTTCAAGGGTTTCCG
AATGGCTCGATCTACTTCGGGCGTATGCGAGGGTGATTGGTTTTTCGAGG
CAAAAGTTCTTTCGTACGAAGGCGATGGAGCTGTGCGACTTGGCTGGTCT
CAACGCCGATCAGACCAAGAAACTCCTGTCGGCTTCGATGTGTACGGATA
TGGCTATCGTGACCGGACTGGTGGTTTTGTCCACGCTGCTCGAGTAAGAC
CATATGCTGAAGAGTATGGCGTAAACGATGTTATTGGTTGTAGGATTAAG
TTACCTAGCCTGTCTGATGAGCAGAAGCAACGTATCAAAGAAAGCGATCA
CAAGTGGTTGCATTATCGTTTTATCAACCTTTTGCAGGGTCAGCCACCAC
CCGACTGTGATATTGATATCCATGGAGAGGCATTTGTCCAATTTTATAAG
AATGGCAAGGATATGGGCGTTCCCGCGTTTTTCACTGAAAAGGAGCAGAC
CGATTCGCGACCATCACGAAAGAATGGCGCTGAGAAGCGTCCCAACGAGC
ATGTCAGTAAGAAGTCATCAACAAATACCAAACGACGCCTGTGCGCGGGC
TACTTTTATCCATCAATTTCTTTGTTTGGTAACGCTGTTGTTGAGGCTAA
TTTCGGCCCCAACTTCTGGTTTCCATTGCCGGAGGGGTCGAGGCCCATGT
CCGAGGCCGCCACGGATGCTCCTCAACCAAAGCCTGCCAAGGACACTGTT
GAATCAACGCAAGAGCAGGAACACGAAGCAGCTCTTGGAAAGGACTCTCT
GAAAGAGGCGAATGATATTAGAAGTGCAAACACCGAATCAGTGACGAAGT
CTTTTACGGCGACTGTGAACAATGCTCATCAAAATGATACAAGTCACGAT
GATAACCATGAACACAATGGACCTAATAACACCCGCAGTCGAAGTGGACA
CGTAGAGAATGGTGAAAAGGGCGACGGTNNNNNNNNNNTCGCCACGAGAT
AA

protein sequence of Gcaud2940.t1

>Gcaud2940.t1 ID=Gcaud2940.t1|Name=Gcaud2940.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=534bp
MGPVTDASSRSLTASASALPSRANHAPSTSPSPSTDADMAPDSAPSKRGA
HPADKPPLHKRPRRLTWYDFVRDAWKLLTARFPDRNQFKLSEIVDTVTNL
RGKEKKNSRWKKDVTVCIRSDTILTRSADTNEEYYVLRDLHYVPKPNAKR
PQPEKKKYLSDDDAKLAEEQLSRATIPSEWTTEAFKPVRLSTFDKSPAIQ
FVDDSSENKVKGFKGFRMARSTSGVCEGDWFFEAKVLSYEGDGAVRLGWS
QRRSDQETPVGFDVYGYGYRDRTGGFVHAARVRPYAEEYGVNDVIGCRIK
LPSLSDEQKQRIKESDHKWLHYRFINLLQGQPPPDCDIDIHGEAFVQFYK
NGKDMGVPAFFTEKEQTDSRPSRKNGAEKRPNEHVSKKSSTNTKRRLCAG
YFYPSISLFGNAVVEANFGPNFWFPLPEGSRPMSEAATDAPQPKPAKDTV
ESTQEQEHEAALGKDSLKEANDIRSANTESVTKSFTATVNNAHQNDTSHD
DNHEHNGPNNTRSRSGHVENGEKGDGXXXXATR*

mRNA from alignment at NODE_3796_length_2931_cov_3.891197:686..2287-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2940.t1 ID=Gcaud2940.t1|Name=Gcaud2940.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1602bp|location=Sequence derived from alignment at NODE_3796_length_2931_cov_3.891197:686..2287- (Gracilaria caudata M_176_S67 male)
ATGGGCCCCGTCACAGACGCCTCGTCGCGCTCGCTCACCGCCTCTGCCTC
CGCGTTGCCGTCGCGCGCCAACCATGCGCCGAGCACGTCACCGTCGCCGT
CCACCGACGCTGATATGGCGCCCGACTCCGCGCCTTCCAAACGCGGTGCA
CATCCCGCCGACAAACCTCCACTGCACAAACGCCCGCGACGACTCACGTG
GTATGACTTTGTGCGCGATGCGTGGAAGTTGTTGACTGCCCGTTTTCCTG
ACCGTAACCAATTCAAGCTGTCGGAGATTGTGGACACAGTCACCAATCTT
AGAGGAAAGGAAAAGAAAAACTCGCGATGGAAAAAGGACGTTACCGTCTG
CATTCGCAGCGATACTATCCTCACTCGCTCTGCCGATACCAACGAGGAGT
ACTACGTTCTTCGAGACCTGCATTATGTACCAAAGCCGAACGCCAAGAGG
CCCCAGCCAGAGAAGAAGAAGTACCTTTCGGATGACGATGCCAAACTGGC
TGAGGAGCAATTGTCGCGAGCTACAATTCCATCGGAATGGACCACGGAGG
CCTTCAAACCCGTTCGTCTTAGTACCTTTGACAAGTCGCCAGCCATTCAA
TTCGTAGATGACTCAAGCGAGAACAAGGTTAAGGGCTTCAAGGGTTTCCG
AATGGCTCGATCTACTTCGGGCGTATGCGAGGGTGATTGGTTTTTCGAGG
CAAAAGTTCTTTCGTACGAAGGCGATGGAGCTGTGCGACTTGGCTGGTCT
CAACGCCGATCAGACCAAGAAACTCCTGTCGGCTTCGATGTGTACGGATA
TGGCTATCGTGACCGGACTGGTGGTTTTGTCCACGCTGCTCGAGTAAGAC
CATATGCTGAAGAGTATGGCGTAAACGATGTTATTGGTTGTAGGATTAAG
TTACCTAGCCTGTCTGATGAGCAGAAGCAACGTATCAAAGAAAGCGATCA
CAAGTGGTTGCATTATCGTTTTATCAACCTTTTGCAGGGTCAGCCACCAC
CCGACTGTGATATTGATATCCATGGAGAGGCATTTGTCCAATTTTATAAG
AATGGCAAGGATATGGGCGTTCCCGCGTTTTTCACTGAAAAGGAGCAGAC
CGATTCGCGACCATCACGAAAGAATGGCGCTGAGAAGCGTCCCAACGAGC
ATGTCAGTAAGAAGTCATCAACAAATACCAAACGACGCCTGTGCGCGGGC
TACTTTTATCCATCAATTTCTTTGTTTGGTAACGCTGTTGTTGAGGCTAA
TTTCGGCCCCAACTTCTGGTTTCCATTGCCGGAGGGGTCGAGGCCCATGT
CCGAGGCCGCCACGGATGCTCCTCAACCAAAGCCTGCCAAGGACACTGTT
GAATCAACGCAAGAGCAGGAACACGAAGCAGCTCTTGGAAAGGACTCTCT
GAAAGAGGCGAATGATATTAGAAGTGCAAACACCGAATCAGTGACGAAGT
CTTTTACGGCGACTGTGAACAATGCTCATCAAAATGATACAAGTCACGAT
GATAACCATGAACACAATGGACCTAATAACACCCGCAGTCGAAGTGGACA
CGTAGAGAATGGTGAAAAGGGCGACGGTNNNNNNNNNNTCGCCACGAGAT
AA

Coding sequence (CDS) from alignment at NODE_3796_length_2931_cov_3.891197:686..2287-

>Gcaud2940.t1 ID=Gcaud2940.t1|Name=Gcaud2940.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1602bp|location=Sequence derived from alignment at NODE_3796_length_2931_cov_3.891197:686..2287- (Gracilaria caudata M_176_S67 male)
ATGGGCCCCGTCACAGACGCCTCGTCGCGCTCGCTCACCGCCTCTGCCTC
CGCGTTGCCGTCGCGCGCCAACCATGCGCCGAGCACGTCACCGTCGCCGT
CCACCGACGCTGATATGGCGCCCGACTCCGCGCCTTCCAAACGCGGTGCA
CATCCCGCCGACAAACCTCCACTGCACAAACGCCCGCGACGACTCACGTG
GTATGACTTTGTGCGCGATGCGTGGAAGTTGTTGACTGCCCGTTTTCCTG
ACCGTAACCAATTCAAGCTGTCGGAGATTGTGGACACAGTCACCAATCTT
AGAGGAAAGGAAAAGAAAAACTCGCGATGGAAAAAGGACGTTACCGTCTG
CATTCGCAGCGATACTATCCTCACTCGCTCTGCCGATACCAACGAGGAGT
ACTACGTTCTTCGAGACCTGCATTATGTACCAAAGCCGAACGCCAAGAGG
CCCCAGCCAGAGAAGAAGAAGTACCTTTCGGATGACGATGCCAAACTGGC
TGAGGAGCAATTGTCGCGAGCTACAATTCCATCGGAATGGACCACGGAGG
CCTTCAAACCCGTTCGTCTTAGTACCTTTGACAAGTCGCCAGCCATTCAA
TTCGTAGATGACTCAAGCGAGAACAAGGTTAAGGGCTTCAAGGGTTTCCG
AATGGCTCGATCTACTTCGGGCGTATGCGAGGGTGATTGGTTTTTCGAGG
CAAAAGTTCTTTCGTACGAAGGCGATGGAGCTGTGCGACTTGGCTGGTCT
CAACGCCGATCAGACCAAGAAACTCCTGTCGGCTTCGATGTGTACGGATA
TGGCTATCGTGACCGGACTGGTGGTTTTGTCCACGCTGCTCGAGTAAGAC
CATATGCTGAAGAGTATGGCGTAAACGATGTTATTGGTTGTAGGATTAAG
TTACCTAGCCTGTCTGATGAGCAGAAGCAACGTATCAAAGAAAGCGATCA
CAAGTGGTTGCATTATCGTTTTATCAACCTTTTGCAGGGTCAGCCACCAC
CCGACTGTGATATTGATATCCATGGAGAGGCATTTGTCCAATTTTATAAG
AATGGCAAGGATATGGGCGTTCCCGCGTTTTTCACTGAAAAGGAGCAGAC
CGATTCGCGACCATCACGAAAGAATGGCGCTGAGAAGCGTCCCAACGAGC
ATGTCAGTAAGAAGTCATCAACAAATACCAAACGACGCCTGTGCGCGGGC
TACTTTTATCCATCAATTTCTTTGTTTGGTAACGCTGTTGTTGAGGCTAA
TTTCGGCCCCAACTTCTGGTTTCCATTGCCGGAGGGGTCGAGGCCCATGT
CCGAGGCCGCCACGGATGCTCCTCAACCAAAGCCTGCCAAGGACACTGTT
GAATCAACGCAAGAGCAGGAACACGAAGCAGCTCTTGGAAAGGACTCTCT
GAAAGAGGCGAATGATATTAGAAGTGCAAACACCGAATCAGTGACGAAGT
CTTTTACGGCGACTGTGAACAATGCTCATCAAAATGATACAAGTCACGAT
GATAACCATGAACACAATGGACCTAATAACACCCGCAGTCGAAGTGGACA
CGTAGAGAATGGTGAAAAGGGCGACGGTNNNNNNNNNNTCGCCACGAGAT
AA