Gcaud2934.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2934.t1
Unique Name	Gcaud2934.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	615

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_92_length_53089_cov_4.692668	contig	NODE_92_length_53089_cov_4.692668:43151..45150 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705524.1
Preferred name	MAM3
PFAMs	CBS,DUF21
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03136,ko:K10335,ko:K16302,ko:K18442
KEGG TC	9.A.40.3
KEGG Pathway	ko03022,ko04144,ko05169,ko05203,map03022,map04144,map05169,map05203
GOs	GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005783,GO:0005886,GO:0006873,GO:0006875,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0030003,GO:0030026,GO:0031090,GO:0031224,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046916,GO:0048878,GO:0050801,GO:0055065,GO:0055071,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0098588,GO:0098771,GO:0098805,GO:0098852
Evalue	2.58e-119
EggNOG OGs	COG1253@1\|root,KOG2118@2759\|Eukaryota
Description	magnesium ion homeostasis
COG category	E
BRITE	ko00000,ko00001,ko02000,ko03021,ko04121,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2934	Gcaud2934	Gracilaria caudata M_176_S67 male	gene	NODE_92_length_53089_cov_4.692668 43151..45150 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2934.t1	Gcaud2934.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_92_length_53089_cov_4.692668 43151..45150 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2934.t1.start1	Gcaud2934.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_92_length_53089_cov_4.692668 43151..43153 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2934.t1.CDS1	Gcaud2934.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_92_length_53089_cov_4.692668 43151..44230 +
Gcaud2934.t1.CDS2	Gcaud2934.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_92_length_53089_cov_4.692668 44386..45150 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2934.t1.exon1	Gcaud2934.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_92_length_53089_cov_4.692668 43151..44230 +
Gcaud2934.t1.exon2	Gcaud2934.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_92_length_53089_cov_4.692668 44386..45150 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2934.t1.intron1	Gcaud2934.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_92_length_53089_cov_4.692668 44231..44385 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2934.t1.stop1	Gcaud2934.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_92_length_53089_cov_4.692668 45148..45150 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_92_length_53089_cov_4.692668:43151..45150+
coding sequence from alignment at NODE_92_length_53089_cov_4.692668:43151..45150+

mRNA sequence

>Gcaud2934.t1 ID=Gcaud2934.t1|Name=Gcaud2934.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=615bp
MFSLYYLLRLASDGGANTRSGQELSPLHGLPAPILVVLALACLCLAACVA
GLTLGLMSLDTTGLDIVMQSNNAKQAAAARAIKPIREQGNLLLVTLLFAN
TIATELLPLVLDALVPGGIFSLVVSVVSIMLFGEIIPQAICSRHPLIIGS
YMIGFVKFLRTLLYPVSFPIAWVLDAFLGEELGTIYNREELKGLIDVHAS
NAVLTQDETTILKGALEFSAKTVSQILTPAKNVFMLDIDSRLDRETMLQI
LRSGHSRVPLYEDNQHNIVCLLLVKQIILVNPDDNLPIRSLISRKQRNHK
VRVAPALECSDNTLISDLLNEFQKGRSHMAIVYNDIHLDHDEREFVGIVS
IEDIIEEILQEEIIDETDTYIDNTNRAKVLVRDSNGKLVRTTTVSTHTMV
LPRNSGASVVVKEVDVKSLRKPLKNSGEEYPRDWKKPKTTKRDSSILQSL
SGEDDVALECLPDLEKGIVATQLSPTLRPQSSEMTPLVQEDAEAEIAGSP
DIQYAILPNESSLSMMGEDDNVVPEDIVRRTNSSSDVSVAPDPSTHSVTV
VRDKDEKKPLQVRPLPKDASDARAVQIPPRVRPSTSAVGGASSPSMRSYG
SIRPAEEQEDESGD*

spliced messenger RNA

>Gcaud2934.t1 ID=Gcaud2934.t1|Name=Gcaud2934.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1845bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:43151..45150+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTCATTGTACTATTTACTGCGTCTTGCGAGCGATGGCGGGGCGAA
TACTCGGAGTGGCCAAGAACTTTCACCACTTCATGGTCTTCCGGCTCCAA
TTCTGGTTGTGCTCGCTCTTGCATGTTTGTGTCTTGCTGCGTGCGTGGCG
GGTCTAACTCTTGGTCTAATGAGCCTGGATACAACAGGTCTCGATATCGT
TATGCAAAGCAACAATGCAAAGCAAGCTGCCGCTGCGCGTGCTATCAAGC
CCATTCGAGAGCAGGGCAATCTCCTTCTTGTCACGCTCTTATTCGCAAAC
ACTATTGCTACAGAGCTATTGCCTCTGGTTTTGGATGCTCTGGTCCCGGG
TGGTATCTTTTCTCTGGTTGTGTCAGTAGTGTCGATTATGCTTTTCGGAG
AGATTATTCCACAAGCTATATGTTCACGCCATCCTTTAATTATCGGTTCA
TACATGATTGGATTCGTGAAGTTCCTGCGTACGCTCTTATATCCCGTTTC
ATTTCCCATTGCCTGGGTATTAGACGCTTTCTTGGGCGAGGAGTTAGGAA
CCATTTACAACCGGGAAGAACTGAAGGGTCTAATCGACGTGCACGCGAGC
AATGCTGTTTTGACTCAGGATGAAACTACAATTTTGAAGGGAGCACTTGA
GTTTTCTGCTAAGACTGTTTCACAAATTCTTACCCCCGCGAAGAATGTGT
TTATGCTAGACATAGACTCTCGACTCGACCGCGAGACAATGCTACAGATT
CTCAGAAGCGGACATTCTCGCGTACCGCTTTATGAAGATAACCAGCACAA
CATCGTTTGTTTGCTACTGGTCAAACAGATCATTCTCGTGAATCCGGATG
ATAACCTCCCAATCCGCTCTCTAATATCAAGGAAACAGAGAAACCACAAG
GTCCGCGTCGCGCCGGCTCTTGAGTGTTCAGATAATACGCTTATTTCAGA
TCTTTTGAATGAGTTCCAGAAGGGAAGAAGTCATATGGCCATTGTATACA
ACGATATTCATCTTGACCACGATGAGCGGGAGTTTGTAGGAATTGTTTCA
ATCGAGGATATTATTGAAGAAATTCTACAGGAGGAAATCATTGACGAAAC
TGATACATATATTGATAACACAAACAGAGCAAAAGTTTTGGTCCGAGACT
CTAACGGTAAACTCGTTCGTACGACGACCGTCAGTACTCACACTATGGTT
CTACCCAGAAATTCAGGCGCTTCTGTCGTGGTCAAGGAAGTTGACGTGAA
GTCTTTGCGAAAGCCACTAAAGAACTCTGGCGAAGAGTATCCGCGGGACT
GGAAGAAGCCTAAGACCACAAAACGGGACTCGTCGATACTACAAAGCTTG
TCTGGGGAAGATGATGTTGCCCTAGAGTGTCTACCTGATCTCGAAAAAGG
AATCGTTGCCACTCAGCTTTCGCCGACGCTTCGTCCTCAATCATCAGAGA
TGACCCCTCTTGTTCAAGAGGATGCCGAGGCCGAAATCGCTGGCAGTCCA
GACATTCAGTATGCCATTTTGCCTAACGAATCTTCACTTTCAATGATGGG
TGAGGACGACAATGTGGTACCAGAAGACATTGTACGTAGAACTAATTCGA
GTTCTGATGTTTCCGTCGCTCCTGATCCTTCCACACATTCAGTCACAGTC
GTAAGAGATAAGGACGAGAAGAAGCCGTTGCAAGTACGTCCGCTGCCCAA
AGACGCCTCAGACGCTCGTGCCGTTCAAATTCCACCGCGTGTGCGCCCAA
GCACGAGTGCAGTAGGTGGGGCGTCAAGTCCATCCATGCGTTCTTATGGA
TCAATACGCCCCGCCGAAGAACAGGAGGATGAATCTGGGGATTAA

protein sequence of Gcaud2934.t1

>Gcaud2934.t1 ID=Gcaud2934.t1|Name=Gcaud2934.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=615bp
MFSLYYLLRLASDGGANTRSGQELSPLHGLPAPILVVLALACLCLAACVA
GLTLGLMSLDTTGLDIVMQSNNAKQAAAARAIKPIREQGNLLLVTLLFAN
TIATELLPLVLDALVPGGIFSLVVSVVSIMLFGEIIPQAICSRHPLIIGS
YMIGFVKFLRTLLYPVSFPIAWVLDAFLGEELGTIYNREELKGLIDVHAS
NAVLTQDETTILKGALEFSAKTVSQILTPAKNVFMLDIDSRLDRETMLQI
LRSGHSRVPLYEDNQHNIVCLLLVKQIILVNPDDNLPIRSLISRKQRNHK
VRVAPALECSDNTLISDLLNEFQKGRSHMAIVYNDIHLDHDEREFVGIVS
IEDIIEEILQEEIIDETDTYIDNTNRAKVLVRDSNGKLVRTTTVSTHTMV
LPRNSGASVVVKEVDVKSLRKPLKNSGEEYPRDWKKPKTTKRDSSILQSL
SGEDDVALECLPDLEKGIVATQLSPTLRPQSSEMTPLVQEDAEAEIAGSP
DIQYAILPNESSLSMMGEDDNVVPEDIVRRTNSSSDVSVAPDPSTHSVTV
VRDKDEKKPLQVRPLPKDASDARAVQIPPRVRPSTSAVGGASSPSMRSYG
SIRPAEEQEDESGD*

mRNA from alignment at NODE_92_length_53089_cov_4.692668:43151..45150+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2934.t1 ID=Gcaud2934.t1|Name=Gcaud2934.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2000bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:43151..45150+ (Gracilaria caudata M_176_S67 male)
ATGTTTTCATTGTACTATTTACTGCGTCTTGCGAGCGATGGCGGGGCGAA
TACTCGGAGTGGCCAAGAACTTTCACCACTTCATGGTCTTCCGGCTCCAA
TTCTGGTTGTGCTCGCTCTTGCATGTTTGTGTCTTGCTGCGTGCGTGGCG
GGTCTAACTCTTGGTCTAATGAGCCTGGATACAACAGGTCTCGATATCGT
TATGCAAAGCAACAATGCAAAGCAAGCTGCCGCTGCGCGTGCTATCAAGC
CCATTCGAGAGCAGGGCAATCTCCTTCTTGTCACGCTCTTATTCGCAAAC
ACTATTGCTACAGAGCTATTGCCTCTGGTTTTGGATGCTCTGGTCCCGGG
TGGTATCTTTTCTCTGGTTGTGTCAGTAGTGTCGATTATGCTTTTCGGAG
AGATTATTCCACAAGCTATATGTTCACGCCATCCTTTAATTATCGGTTCA
TACATGATTGGATTCGTGAAGTTCCTGCGTACGCTCTTATATCCCGTTTC
ATTTCCCATTGCCTGGGTATTAGACGCTTTCTTGGGCGAGGAGTTAGGAA
CCATTTACAACCGGGAAGAACTGAAGGGTCTAATCGACGTGCACGCGAGC
AATGCTGTTTTGACTCAGGATGAAACTACAATTTTGAAGGGAGCACTTGA
GTTTTCTGCTAAGACTGTTTCACAAATTCTTACCCCCGCGAAGAATGTGT
TTATGCTAGACATAGACTCTCGACTCGACCGCGAGACAATGCTACAGATT
CTCAGAAGCGGACATTCTCGCGTACCGCTTTATGAAGATAACCAGCACAA
CATCGTTTGTTTGCTACTGGTCAAACAGATCATTCTCGTGAATCCGGATG
ATAACCTCCCAATCCGCTCTCTAATATCAAGGAAACAGAGAAACCACAAG
GTCCGCGTCGCGCCGGCTCTTGAGTGTTCAGATAATACGCTTATTTCAGA
TCTTTTGAATGAGTTCCAGAAGGGAAGAAGTCATATGGCCATTGTATACA
ACGATATTCATCTTGACCACGATGAGCGGGAGTTTGTAGGAATTGTTTCA
ATCGAGGATATTATTGAAGAAATTCTACAGGTATGTTTGCAAGCAATGCC
GAACCTTTTCAGTTATCCCGTTCCATTACCAAGCGTGAAGTAGCATCCGA
TCCCTCCATTCAAAGGGACTGTATTCGATGTAGGGCAAGAAGTAATGAAC
TAACCATGAGCAATGAATCTATTTTGAAACTGCAGGAGGAAATCATTGAC
GAAACTGATACATATATTGATAACACAAACAGAGCAAAAGTTTTGGTCCG
AGACTCTAACGGTAAACTCGTTCGTACGACGACCGTCAGTACTCACACTA
TGGTTCTACCCAGAAATTCAGGCGCTTCTGTCGTGGTCAAGGAAGTTGAC
GTGAAGTCTTTGCGAAAGCCACTAAAGAACTCTGGCGAAGAGTATCCGCG
GGACTGGAAGAAGCCTAAGACCACAAAACGGGACTCGTCGATACTACAAA
GCTTGTCTGGGGAAGATGATGTTGCCCTAGAGTGTCTACCTGATCTCGAA
AAAGGAATCGTTGCCACTCAGCTTTCGCCGACGCTTCGTCCTCAATCATC
AGAGATGACCCCTCTTGTTCAAGAGGATGCCGAGGCCGAAATCGCTGGCA
GTCCAGACATTCAGTATGCCATTTTGCCTAACGAATCTTCACTTTCAATG
ATGGGTGAGGACGACAATGTGGTACCAGAAGACATTGTACGTAGAACTAA
TTCGAGTTCTGATGTTTCCGTCGCTCCTGATCCTTCCACACATTCAGTCA
CAGTCGTAAGAGATAAGGACGAGAAGAAGCCGTTGCAAGTACGTCCGCTG
CCCAAAGACGCCTCAGACGCTCGTGCCGTTCAAATTCCACCGCGTGTGCG
CCCAAGCACGAGTGCAGTAGGTGGGGCGTCAAGTCCATCCATGCGTTCTT
ATGGATCAATACGCCCCGCCGAAGAACAGGAGGATGAATCTGGGGATTAA

Coding sequence (CDS) from alignment at NODE_92_length_53089_cov_4.692668:43151..45150+

>Gcaud2934.t1 ID=Gcaud2934.t1|Name=Gcaud2934.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1845bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:43151..45150+ (Gracilaria caudata M_176_S67 male)
ATGTTTTCATTGTACTATTTACTGCGTCTTGCGAGCGATGGCGGGGCGAA
TACTCGGAGTGGCCAAGAACTTTCACCACTTCATGGTCTTCCGGCTCCAA
TTCTGGTTGTGCTCGCTCTTGCATGTTTGTGTCTTGCTGCGTGCGTGGCG
GGTCTAACTCTTGGTCTAATGAGCCTGGATACAACAGGTCTCGATATCGT
TATGCAAAGCAACAATGCAAAGCAAGCTGCCGCTGCGCGTGCTATCAAGC
CCATTCGAGAGCAGGGCAATCTCCTTCTTGTCACGCTCTTATTCGCAAAC
ACTATTGCTACAGAGCTATTGCCTCTGGTTTTGGATGCTCTGGTCCCGGG
TGGTATCTTTTCTCTGGTTGTGTCAGTAGTGTCGATTATGCTTTTCGGAG
AGATTATTCCACAAGCTATATGTTCACGCCATCCTTTAATTATCGGTTCA
TACATGATTGGATTCGTGAAGTTCCTGCGTACGCTCTTATATCCCGTTTC
ATTTCCCATTGCCTGGGTATTAGACGCTTTCTTGGGCGAGGAGTTAGGAA
CCATTTACAACCGGGAAGAACTGAAGGGTCTAATCGACGTGCACGCGAGC
AATGCTGTTTTGACTCAGGATGAAACTACAATTTTGAAGGGAGCACTTGA
GTTTTCTGCTAAGACTGTTTCACAAATTCTTACCCCCGCGAAGAATGTGT
TTATGCTAGACATAGACTCTCGACTCGACCGCGAGACAATGCTACAGATT
CTCAGAAGCGGACATTCTCGCGTACCGCTTTATGAAGATAACCAGCACAA
CATCGTTTGTTTGCTACTGGTCAAACAGATCATTCTCGTGAATCCGGATG
ATAACCTCCCAATCCGCTCTCTAATATCAAGGAAACAGAGAAACCACAAG
GTCCGCGTCGCGCCGGCTCTTGAGTGTTCAGATAATACGCTTATTTCAGA
TCTTTTGAATGAGTTCCAGAAGGGAAGAAGTCATATGGCCATTGTATACA
ACGATATTCATCTTGACCACGATGAGCGGGAGTTTGTAGGAATTGTTTCA
ATCGAGGATATTATTGAAGAAATTCTACAGGAGGAAATCATTGACGAAAC
TGATACATATATTGATAACACAAACAGAGCAAAAGTTTTGGTCCGAGACT
CTAACGGTAAACTCGTTCGTACGACGACCGTCAGTACTCACACTATGGTT
CTACCCAGAAATTCAGGCGCTTCTGTCGTGGTCAAGGAAGTTGACGTGAA
GTCTTTGCGAAAGCCACTAAAGAACTCTGGCGAAGAGTATCCGCGGGACT
GGAAGAAGCCTAAGACCACAAAACGGGACTCGTCGATACTACAAAGCTTG
TCTGGGGAAGATGATGTTGCCCTAGAGTGTCTACCTGATCTCGAAAAAGG
AATCGTTGCCACTCAGCTTTCGCCGACGCTTCGTCCTCAATCATCAGAGA
TGACCCCTCTTGTTCAAGAGGATGCCGAGGCCGAAATCGCTGGCAGTCCA
GACATTCAGTATGCCATTTTGCCTAACGAATCTTCACTTTCAATGATGGG
TGAGGACGACAATGTGGTACCAGAAGACATTGTACGTAGAACTAATTCGA
GTTCTGATGTTTCCGTCGCTCCTGATCCTTCCACACATTCAGTCACAGTC
GTAAGAGATAAGGACGAGAAGAAGCCGTTGCAAGTACGTCCGCTGCCCAA
AGACGCCTCAGACGCTCGTGCCGTTCAAATTCCACCGCGTGTGCGCCCAA
GCACGAGTGCAGTAGGTGGGGCGTCAAGTCCATCCATGCGTTCTTATGGA
TCAATACGCCCCGCCGAAGAACAGGAGGATGAATCTGGGGATTAA