Gcaud2932.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2932.t1
Unique NameGcaud2932.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length309
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_92_length_53089_cov_4.692668contigNODE_92_length_53089_cov_4.692668:39090..40172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6500.XP_005091215.1
Preferred nameSLC25A11
PFAMsMito_carr
Max annot lvl33208|Metazoa
KEGG koko:K15104
KEGG TC2.A.29.2.1,2.A.29.2.9
GOsGO:0003674,GO:0005215,GO:0005310,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005886,GO:0005887,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0006839,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009058,GO:0015075,GO:0015140,GO:0015291,GO:0015297,GO:0015301,GO:0015318,GO:0015367,GO:0015556,GO:0015711,GO:0015740,GO:0015742,GO:0015743,GO:0015849,GO:0016020,GO:0016021,GO:0016051,GO:0019318,GO:0019319,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031226,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0046364,GO:0046942,GO:0046943,GO:0051179,GO:0051181,GO:0051234,GO:0055085,GO:0071423,GO:0071702,GO:0071704,GO:0071944,GO:0098656,GO:0099516,GO:1901576,GO:1903825,GO:1905039
Evalue1.88e-117
EggNOG OGsKOG0759@1|root,KOG0759@2759|Eukaryota,38GP4@33154|Opisthokonta,3BDF9@33208|Metazoa,3CS0D@33213|Bilateria
Descriptionoxoglutarate:malate antiporter activity
COG categoryC
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2932Gcaud2932Gracilaria caudata M_176_S67 malegeneNODE_92_length_53089_cov_4.692668 39090..40172 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2932.t1Gcaud2932.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_92_length_53089_cov_4.692668 39090..40172 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2932.t1.stop1Gcaud2932.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_92_length_53089_cov_4.692668 39090..39092 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2932.t1.CDS1Gcaud2932.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_92_length_53089_cov_4.692668 39090..39843 -
Gcaud2932.t1.CDS2Gcaud2932.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_92_length_53089_cov_4.692668 39911..39998 -
Gcaud2932.t1.CDS3Gcaud2932.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_92_length_53089_cov_4.692668 40088..40172 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2932.t1.exon1Gcaud2932.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_92_length_53089_cov_4.692668 39090..39843 -
Gcaud2932.t1.exon2Gcaud2932.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_92_length_53089_cov_4.692668 39911..39998 -
Gcaud2932.t1.exon3Gcaud2932.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_92_length_53089_cov_4.692668 40088..40172 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2932.t1.intron1Gcaud2932.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_92_length_53089_cov_4.692668 39844..39910 -
Gcaud2932.t1.intron2Gcaud2932.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_92_length_53089_cov_4.692668 39999..40087 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2932.t1.start1Gcaud2932.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_92_length_53089_cov_4.692668 40170..40172 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2932.t1 ID=Gcaud2932.t1|Name=Gcaud2932.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=309bp
MSSSASKKPSIPTVQIPKYLQFVFGGSAGMAATCVVQPIDLVKTRMQLAT
ATPGILNHGFVTTLQSVAATEGVSGLYRGLTAGLFRQMTYTTGRLGTFGV
LKDFMSPDGSPLPFYKKAFAGMVAGGIGAVVGTPAEVALIRMTADGRLPA
AERRGYTNVVNALSRVTKEEGLLTLWRGTMPTVGRAMVLNIAQLATYDQA
KENILKTGVVGDNIYAHAMASTVSAFFATVVSIPLDSAKTRVQNMKVING
VPEYTGMLDALTKTARREGFFSLWKGMTPYFLRLGPHTILTFICLEQFKA
AYYRSLKR*
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spliced messenger RNA

>Gcaud2932.t1 ID=Gcaud2932.t1|Name=Gcaud2932.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=927bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:39090..40172- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATCATCCGCATCGAAGAAACCTTCCATACCAACGGTACAGATACC
TAAGTACCTACAATTCGTTTTTGGCGGCTCTGCTGGTATGGCGGCAACAT
GCGTTGTGCAGCCCATCGATCTCGTGAAGACAAGAATGCAGCTAGCCACT
GCAACCCCCGGCATATTGAACCACGGTTTTGTCACAACATTGCAATCAGT
TGCGGCGACAGAAGGCGTCAGTGGACTATATCGAGGCCTGACAGCGGGTT
TATTCCGACAAATGACGTATACGACTGGTCGTCTGGGAACATTTGGTGTT
TTGAAGGACTTTATGTCTCCTGACGGATCGCCCTTACCGTTCTACAAGAA
GGCGTTCGCGGGAATGGTAGCAGGTGGTATTGGTGCCGTAGTAGGTACAC
CGGCTGAAGTGGCGCTGATTCGAATGACTGCGGACGGAAGACTACCAGCT
GCAGAGCGACGTGGTTATACAAATGTGGTGAATGCCCTTTCAAGAGTAAC
CAAAGAAGAAGGTCTTTTGACTCTGTGGCGAGGCACGATGCCCACCGTGG
GACGAGCTATGGTGCTAAACATTGCGCAGTTAGCCACGTACGATCAGGCA
AAGGAGAATATTTTGAAGACGGGCGTTGTTGGTGATAATATTTACGCACA
CGCGATGGCAAGTACGGTTTCTGCATTCTTCGCAACTGTTGTTTCGATTC
CACTTGATTCTGCGAAGACCAGAGTGCAGAATATGAAAGTCATCAATGGC
GTTCCCGAATACACGGGAATGTTGGATGCACTTACAAAGACCGCACGGCG
AGAAGGATTCTTCAGTTTGTGGAAGGGGATGACTCCCTACTTTCTAAGAC
TTGGGCCACATACAATTCTGACATTCATTTGCCTTGAGCAGTTTAAGGCC
GCCTATTACCGAAGCCTGAAGCGCTGA
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protein sequence of Gcaud2932.t1

>Gcaud2932.t1 ID=Gcaud2932.t1|Name=Gcaud2932.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=309bp
MSSSASKKPSIPTVQIPKYLQFVFGGSAGMAATCVVQPIDLVKTRMQLAT
ATPGILNHGFVTTLQSVAATEGVSGLYRGLTAGLFRQMTYTTGRLGTFGV
LKDFMSPDGSPLPFYKKAFAGMVAGGIGAVVGTPAEVALIRMTADGRLPA
AERRGYTNVVNALSRVTKEEGLLTLWRGTMPTVGRAMVLNIAQLATYDQA
KENILKTGVVGDNIYAHAMASTVSAFFATVVSIPLDSAKTRVQNMKVING
VPEYTGMLDALTKTARREGFFSLWKGMTPYFLRLGPHTILTFICLEQFKA
AYYRSLKR*
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mRNA from alignment at NODE_92_length_53089_cov_4.692668:39090..40172-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2932.t1 ID=Gcaud2932.t1|Name=Gcaud2932.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:39090..40172- (Gracilaria caudata M_176_S67 male)
ATGTCATCATCCGCATCGAAGAAACCTTCCATACCAACGGTACAGATACC
TAAGTACCTACAATTCGTTTTTGGCGGCTCTGCTGGTAAGATACATCACA
CAAAAGCAAATCTCACATTGTCGCAACTCATGCTTCTTTGGAATCTAACC
TCATGATCGGTTGTTGTGCGGCAGGTATGGCGGCAACATGCGTTGTGCAG
CCCATCGATCTCGTGAAGACAAGAATGCAGCTAGCCACTGCAACCCCCGG
CATATTGAACCAGTAAGTCCTAGAGAAGCACAACCCGCATGAACAGCTAA
ATCTCGTTCTAACCCGTGCGCTCCATCAGCGGTTTTGTCACAACATTGCA
ATCAGTTGCGGCGACAGAAGGCGTCAGTGGACTATATCGAGGCCTGACAG
CGGGTTTATTCCGACAAATGACGTATACGACTGGTCGTCTGGGAACATTT
GGTGTTTTGAAGGACTTTATGTCTCCTGACGGATCGCCCTTACCGTTCTA
CAAGAAGGCGTTCGCGGGAATGGTAGCAGGTGGTATTGGTGCCGTAGTAG
GTACACCGGCTGAAGTGGCGCTGATTCGAATGACTGCGGACGGAAGACTA
CCAGCTGCAGAGCGACGTGGTTATACAAATGTGGTGAATGCCCTTTCAAG
AGTAACCAAAGAAGAAGGTCTTTTGACTCTGTGGCGAGGCACGATGCCCA
CCGTGGGACGAGCTATGGTGCTAAACATTGCGCAGTTAGCCACGTACGAT
CAGGCAAAGGAGAATATTTTGAAGACGGGCGTTGTTGGTGATAATATTTA
CGCACACGCGATGGCAAGTACGGTTTCTGCATTCTTCGCAACTGTTGTTT
CGATTCCACTTGATTCTGCGAAGACCAGAGTGCAGAATATGAAAGTCATC
AATGGCGTTCCCGAATACACGGGAATGTTGGATGCACTTACAAAGACCGC
ACGGCGAGAAGGATTCTTCAGTTTGTGGAAGGGGATGACTCCCTACTTTC
TAAGACTTGGGCCACATACAATTCTGACATTCATTTGCCTTGAGCAGTTT
AAGGCCGCCTATTACCGAAGCCTGAAGCGCTGA
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Coding sequence (CDS) from alignment at NODE_92_length_53089_cov_4.692668:39090..40172-

>Gcaud2932.t1 ID=Gcaud2932.t1|Name=Gcaud2932.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=927bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:39090..40172- (Gracilaria caudata M_176_S67 male)
ATGTCATCATCCGCATCGAAGAAACCTTCCATACCAACGGTACAGATACC
TAAGTACCTACAATTCGTTTTTGGCGGCTCTGCTGGTATGGCGGCAACAT
GCGTTGTGCAGCCCATCGATCTCGTGAAGACAAGAATGCAGCTAGCCACT
GCAACCCCCGGCATATTGAACCACGGTTTTGTCACAACATTGCAATCAGT
TGCGGCGACAGAAGGCGTCAGTGGACTATATCGAGGCCTGACAGCGGGTT
TATTCCGACAAATGACGTATACGACTGGTCGTCTGGGAACATTTGGTGTT
TTGAAGGACTTTATGTCTCCTGACGGATCGCCCTTACCGTTCTACAAGAA
GGCGTTCGCGGGAATGGTAGCAGGTGGTATTGGTGCCGTAGTAGGTACAC
CGGCTGAAGTGGCGCTGATTCGAATGACTGCGGACGGAAGACTACCAGCT
GCAGAGCGACGTGGTTATACAAATGTGGTGAATGCCCTTTCAAGAGTAAC
CAAAGAAGAAGGTCTTTTGACTCTGTGGCGAGGCACGATGCCCACCGTGG
GACGAGCTATGGTGCTAAACATTGCGCAGTTAGCCACGTACGATCAGGCA
AAGGAGAATATTTTGAAGACGGGCGTTGTTGGTGATAATATTTACGCACA
CGCGATGGCAAGTACGGTTTCTGCATTCTTCGCAACTGTTGTTTCGATTC
CACTTGATTCTGCGAAGACCAGAGTGCAGAATATGAAAGTCATCAATGGC
GTTCCCGAATACACGGGAATGTTGGATGCACTTACAAAGACCGCACGGCG
AGAAGGATTCTTCAGTTTGTGGAAGGGGATGACTCCCTACTTTCTAAGAC
TTGGGCCACATACAATTCTGACATTCATTTGCCTTGAGCAGTTTAAGGCC
GCCTATTACCGAAGCCTGAAGCGCTGA
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