Gcaud2925.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2925.t1
Unique Name	Gcaud2925.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	680

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_92_length_53089_cov_4.692668	contig	NODE_92_length_53089_cov_4.692668:13933..16084 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMC181CT
PFAMs	TPR_8
Max annot lvl	2759\|Eukaryota
Evalue	3.82e-38
EggNOG OGs	COG0457@1\|root,KOG0548@2759\|Eukaryota
Description	positive regulation of catalytic activity in other organism involved in symbiotic interaction
COG category	J

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2925	Gcaud2925	Gracilaria caudata M_176_S67 male	gene	NODE_92_length_53089_cov_4.692668 13933..16084 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2925.t1	Gcaud2925.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_92_length_53089_cov_4.692668 13933..16084 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2925.t1.start1	Gcaud2925.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_92_length_53089_cov_4.692668 13933..13935 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2925.t1.CDS1	Gcaud2925.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_92_length_53089_cov_4.692668 13933..13938 +
Gcaud2925.t1.CDS2	Gcaud2925.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_92_length_53089_cov_4.692668 14051..16084 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2925.t1.exon1	Gcaud2925.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_92_length_53089_cov_4.692668 13933..13938 +
Gcaud2925.t1.exon2	Gcaud2925.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_92_length_53089_cov_4.692668 14051..16084 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2925.t1.intron1	Gcaud2925.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_92_length_53089_cov_4.692668 13939..14050 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2925.t1.stop1	Gcaud2925.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_92_length_53089_cov_4.692668 16082..16084 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_92_length_53089_cov_4.692668:13933..16084+
coding sequence from alignment at NODE_92_length_53089_cov_4.692668:13933..16084+

mRNA sequence

>Gcaud2925.t1 ID=Gcaud2925.t1|Name=Gcaud2925.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=680bp
MVGVSGRAARNSKAIREYKATGNKAMQSGSFQKAIRLYTKALELDPGNAL
LYSNRSAAHFNIRQFSESLEDAESSILCDSMWWKAYKRKGLALIHMQRYE
EAIEALEEGLKIVGKNAEMEKNLEFARACQEQAQNLYILPEPHMMQRLES
VPVFIVTDSAGQPFFVTYDDGQQVCTFYFDQKDAKATLDWIKSENPDLGD
TARVIHITLYQAFNLAQETQKQYYEETTRAAAEEDRAAAAAAAEKAKQAK
ISDKSSVAEKIEEDTEPASSEVKKEADDWEEVDTELDTEALENESEAVES
KEDPSESDNSETPLNESQNMESVANGEDGDNEETSEGATVQTEASSGEQT
EDPSTDKKEEKDEDKKENGEGKKDDDMVIDDNAPLSFQFRPELRQVQVAV
ELLNKHPNPPVRPILRDPPSVRKAKAEAKAAEAAKKAAEESQKSDEAGET
AIEGEGVTAGPSNEGTVRKEDSNSEGNAVDLDDEDEELTVDNFNGIPVFQ
AKGLTLLQKNKQLIPLFFSKWDLEAAWKQLKDSNTIDVPGDCEIEVGTLE
DVLRRMSESKTDEFESVFFVPSRESMKAINVRFPLDELAPPYRPGSLPKK
QVKKAGYSKARQIAERGGTKDEIRAAIREDLEKHMERERIAEVLAQIEQA
RRVGGMGTAASMGKKPTKTNKAKVQGVKA*

spliced messenger RNA

>Gcaud2925.t1 ID=Gcaud2925.t1|Name=Gcaud2925.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2040bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:13933..16084+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGGCGTTTCGGGACGAGCTGCGAGAAACTCAAAAGCCATCCGTGA
ATACAAGGCAACCGGCAATAAGGCTATGCAATCAGGTTCTTTTCAGAAGG
CCATTCGTCTGTATACAAAAGCGCTAGAACTCGACCCTGGGAATGCTCTG
CTCTACAGCAATCGCAGCGCTGCCCACTTTAACATTCGGCAGTTCTCTGA
GTCTTTGGAGGACGCTGAAAGCTCTATCCTGTGTGATAGCATGTGGTGGA
AAGCGTATAAGCGCAAGGGCCTGGCTCTGATCCACATGCAGCGTTACGAA
GAGGCAATTGAAGCTCTCGAAGAGGGGCTTAAGATAGTTGGAAAGAACGC
TGAGATGGAAAAGAACCTGGAATTTGCTCGTGCATGCCAGGAGCAGGCGC
AGAATCTGTACATATTACCTGAGCCGCACATGATGCAGCGCCTTGAAAGT
GTTCCAGTCTTCATTGTTACTGATAGCGCTGGGCAGCCCTTCTTCGTCAC
TTACGATGATGGGCAACAAGTTTGTACCTTTTACTTTGATCAGAAGGACG
CTAAAGCTACATTGGACTGGATCAAGAGTGAGAATCCAGATCTCGGTGAT
ACTGCACGCGTCATTCATATCACTTTGTACCAAGCATTTAATCTTGCTCA
AGAAACGCAGAAACAGTACTACGAGGAAACGACTCGTGCTGCGGCAGAGG
AGGACAGAGCGGCTGCGGCGGCAGCTGCAGAGAAAGCGAAGCAAGCTAAG
ATATCCGATAAGAGCAGTGTTGCCGAAAAAATCGAGGAGGATACAGAACC
GGCCAGCAGCGAAGTGAAAAAGGAAGCTGACGATTGGGAAGAAGTAGACA
CTGAACTAGACACCGAAGCCCTCGAAAATGAAAGCGAAGCTGTTGAAAGC
AAAGAAGATCCGTCGGAAAGCGATAATTCCGAGACACCACTAAATGAATC
GCAAAACATGGAAAGCGTGGCGAACGGAGAGGATGGCGATAATGAAGAGA
CGTCAGAGGGTGCCACTGTTCAGACGGAGGCCAGCAGTGGTGAACAGACA
GAGGACCCCAGTACAGACAAGAAGGAAGAGAAGGATGAGGACAAGAAAGA
AAATGGGGAGGGGAAAAAAGATGATGATATGGTCATAGACGATAACGCAC
CGCTCTCGTTCCAGTTCAGACCAGAGCTCAGGCAAGTTCAAGTTGCAGTT
GAATTGCTTAACAAGCATCCGAACCCACCTGTGCGGCCGATTCTCAGGGA
TCCACCGTCAGTCAGGAAGGCTAAAGCCGAAGCAAAGGCAGCCGAAGCAG
CTAAGAAGGCAGCAGAGGAGTCCCAGAAGTCTGATGAAGCTGGGGAAACA
GCTATCGAAGGGGAGGGTGTAACGGCAGGCCCTTCAAACGAAGGCACTGT
TCGCAAGGAAGATTCCAACTCTGAAGGCAATGCTGTCGACCTAGATGATG
AGGACGAGGAACTTACTGTTGACAACTTCAACGGTATTCCTGTTTTCCAG
GCAAAAGGGCTGACCTTGTTGCAGAAGAACAAGCAGTTAATTCCTTTGTT
CTTCTCCAAATGGGACCTTGAGGCAGCATGGAAGCAGCTGAAGGATTCTA
ACACAATTGACGTCCCTGGAGATTGTGAAATAGAAGTTGGCACCCTTGAG
GATGTGCTGAGGCGGATGTCCGAAAGCAAGACTGACGAATTCGAATCTGT
ATTCTTCGTGCCGTCGAGGGAGTCAATGAAGGCAATTAATGTAAGGTTTC
CCTTGGACGAATTGGCGCCGCCGTACAGACCTGGTAGTCTTCCGAAGAAG
CAGGTGAAGAAGGCGGGCTATTCGAAGGCTCGCCAGATCGCTGAGAGGGG
AGGAACGAAGGATGAAATCCGCGCTGCTATTCGAGAGGATTTGGAGAAGC
ACATGGAGCGCGAACGCATCGCTGAGGTTCTGGCACAGATTGAACAAGCT
CGTCGTGTGGGAGGAATGGGTACTGCTGCTAGTATGGGCAAGAAGCCAAC
GAAGACTAATAAGGCAAAGGTGCAAGGAGTGAAAGCATGA

protein sequence of Gcaud2925.t1

>Gcaud2925.t1 ID=Gcaud2925.t1|Name=Gcaud2925.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=680bp
MVGVSGRAARNSKAIREYKATGNKAMQSGSFQKAIRLYTKALELDPGNAL
LYSNRSAAHFNIRQFSESLEDAESSILCDSMWWKAYKRKGLALIHMQRYE
EAIEALEEGLKIVGKNAEMEKNLEFARACQEQAQNLYILPEPHMMQRLES
VPVFIVTDSAGQPFFVTYDDGQQVCTFYFDQKDAKATLDWIKSENPDLGD
TARVIHITLYQAFNLAQETQKQYYEETTRAAAEEDRAAAAAAAEKAKQAK
ISDKSSVAEKIEEDTEPASSEVKKEADDWEEVDTELDTEALENESEAVES
KEDPSESDNSETPLNESQNMESVANGEDGDNEETSEGATVQTEASSGEQT
EDPSTDKKEEKDEDKKENGEGKKDDDMVIDDNAPLSFQFRPELRQVQVAV
ELLNKHPNPPVRPILRDPPSVRKAKAEAKAAEAAKKAAEESQKSDEAGET
AIEGEGVTAGPSNEGTVRKEDSNSEGNAVDLDDEDEELTVDNFNGIPVFQ
AKGLTLLQKNKQLIPLFFSKWDLEAAWKQLKDSNTIDVPGDCEIEVGTLE
DVLRRMSESKTDEFESVFFVPSRESMKAINVRFPLDELAPPYRPGSLPKK
QVKKAGYSKARQIAERGGTKDEIRAAIREDLEKHMERERIAEVLAQIEQA
RRVGGMGTAASMGKKPTKTNKAKVQGVKA*

mRNA from alignment at NODE_92_length_53089_cov_4.692668:13933..16084+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2925.t1 ID=Gcaud2925.t1|Name=Gcaud2925.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2152bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:13933..16084+ (Gracilaria caudata M_176_S67 male)
ATGGTGGTAAGTTGGCGCCGTTCCTTTGCTGAGATGCATTTCTTCGTCCA
CAGTCTGCTCACAGTCTGGAGTTCTAACATTTGTCACTGCCTACCGCCAT
ATAATGTCCTCTACACAGGGCGTTTCGGGACGAGCTGCGAGAAACTCAAA
AGCCATCCGTGAATACAAGGCAACCGGCAATAAGGCTATGCAATCAGGTT
CTTTTCAGAAGGCCATTCGTCTGTATACAAAAGCGCTAGAACTCGACCCT
GGGAATGCTCTGCTCTACAGCAATCGCAGCGCTGCCCACTTTAACATTCG
GCAGTTCTCTGAGTCTTTGGAGGACGCTGAAAGCTCTATCCTGTGTGATA
GCATGTGGTGGAAAGCGTATAAGCGCAAGGGCCTGGCTCTGATCCACATG
CAGCGTTACGAAGAGGCAATTGAAGCTCTCGAAGAGGGGCTTAAGATAGT
TGGAAAGAACGCTGAGATGGAAAAGAACCTGGAATTTGCTCGTGCATGCC
AGGAGCAGGCGCAGAATCTGTACATATTACCTGAGCCGCACATGATGCAG
CGCCTTGAAAGTGTTCCAGTCTTCATTGTTACTGATAGCGCTGGGCAGCC
CTTCTTCGTCACTTACGATGATGGGCAACAAGTTTGTACCTTTTACTTTG
ATCAGAAGGACGCTAAAGCTACATTGGACTGGATCAAGAGTGAGAATCCA
GATCTCGGTGATACTGCACGCGTCATTCATATCACTTTGTACCAAGCATT
TAATCTTGCTCAAGAAACGCAGAAACAGTACTACGAGGAAACGACTCGTG
CTGCGGCAGAGGAGGACAGAGCGGCTGCGGCGGCAGCTGCAGAGAAAGCG
AAGCAAGCTAAGATATCCGATAAGAGCAGTGTTGCCGAAAAAATCGAGGA
GGATACAGAACCGGCCAGCAGCGAAGTGAAAAAGGAAGCTGACGATTGGG
AAGAAGTAGACACTGAACTAGACACCGAAGCCCTCGAAAATGAAAGCGAA
GCTGTTGAAAGCAAAGAAGATCCGTCGGAAAGCGATAATTCCGAGACACC
ACTAAATGAATCGCAAAACATGGAAAGCGTGGCGAACGGAGAGGATGGCG
ATAATGAAGAGACGTCAGAGGGTGCCACTGTTCAGACGGAGGCCAGCAGT
GGTGAACAGACAGAGGACCCCAGTACAGACAAGAAGGAAGAGAAGGATGA
GGACAAGAAAGAAAATGGGGAGGGGAAAAAAGATGATGATATGGTCATAG
ACGATAACGCACCGCTCTCGTTCCAGTTCAGACCAGAGCTCAGGCAAGTT
CAAGTTGCAGTTGAATTGCTTAACAAGCATCCGAACCCACCTGTGCGGCC
GATTCTCAGGGATCCACCGTCAGTCAGGAAGGCTAAAGCCGAAGCAAAGG
CAGCCGAAGCAGCTAAGAAGGCAGCAGAGGAGTCCCAGAAGTCTGATGAA
GCTGGGGAAACAGCTATCGAAGGGGAGGGTGTAACGGCAGGCCCTTCAAA
CGAAGGCACTGTTCGCAAGGAAGATTCCAACTCTGAAGGCAATGCTGTCG
ACCTAGATGATGAGGACGAGGAACTTACTGTTGACAACTTCAACGGTATT
CCTGTTTTCCAGGCAAAAGGGCTGACCTTGTTGCAGAAGAACAAGCAGTT
AATTCCTTTGTTCTTCTCCAAATGGGACCTTGAGGCAGCATGGAAGCAGC
TGAAGGATTCTAACACAATTGACGTCCCTGGAGATTGTGAAATAGAAGTT
GGCACCCTTGAGGATGTGCTGAGGCGGATGTCCGAAAGCAAGACTGACGA
ATTCGAATCTGTATTCTTCGTGCCGTCGAGGGAGTCAATGAAGGCAATTA
ATGTAAGGTTTCCCTTGGACGAATTGGCGCCGCCGTACAGACCTGGTAGT
CTTCCGAAGAAGCAGGTGAAGAAGGCGGGCTATTCGAAGGCTCGCCAGAT
CGCTGAGAGGGGAGGAACGAAGGATGAAATCCGCGCTGCTATTCGAGAGG
ATTTGGAGAAGCACATGGAGCGCGAACGCATCGCTGAGGTTCTGGCACAG
ATTGAACAAGCTCGTCGTGTGGGAGGAATGGGTACTGCTGCTAGTATGGG
CAAGAAGCCAACGAAGACTAATAAGGCAAAGGTGCAAGGAGTGAAAGCAT
GA

Coding sequence (CDS) from alignment at NODE_92_length_53089_cov_4.692668:13933..16084+

>Gcaud2925.t1 ID=Gcaud2925.t1|Name=Gcaud2925.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2040bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:13933..16084+ (Gracilaria caudata M_176_S67 male)
ATGGTGGGCGTTTCGGGACGAGCTGCGAGAAACTCAAAAGCCATCCGTGA
ATACAAGGCAACCGGCAATAAGGCTATGCAATCAGGTTCTTTTCAGAAGG
CCATTCGTCTGTATACAAAAGCGCTAGAACTCGACCCTGGGAATGCTCTG
CTCTACAGCAATCGCAGCGCTGCCCACTTTAACATTCGGCAGTTCTCTGA
GTCTTTGGAGGACGCTGAAAGCTCTATCCTGTGTGATAGCATGTGGTGGA
AAGCGTATAAGCGCAAGGGCCTGGCTCTGATCCACATGCAGCGTTACGAA
GAGGCAATTGAAGCTCTCGAAGAGGGGCTTAAGATAGTTGGAAAGAACGC
TGAGATGGAAAAGAACCTGGAATTTGCTCGTGCATGCCAGGAGCAGGCGC
AGAATCTGTACATATTACCTGAGCCGCACATGATGCAGCGCCTTGAAAGT
GTTCCAGTCTTCATTGTTACTGATAGCGCTGGGCAGCCCTTCTTCGTCAC
TTACGATGATGGGCAACAAGTTTGTACCTTTTACTTTGATCAGAAGGACG
CTAAAGCTACATTGGACTGGATCAAGAGTGAGAATCCAGATCTCGGTGAT
ACTGCACGCGTCATTCATATCACTTTGTACCAAGCATTTAATCTTGCTCA
AGAAACGCAGAAACAGTACTACGAGGAAACGACTCGTGCTGCGGCAGAGG
AGGACAGAGCGGCTGCGGCGGCAGCTGCAGAGAAAGCGAAGCAAGCTAAG
ATATCCGATAAGAGCAGTGTTGCCGAAAAAATCGAGGAGGATACAGAACC
GGCCAGCAGCGAAGTGAAAAAGGAAGCTGACGATTGGGAAGAAGTAGACA
CTGAACTAGACACCGAAGCCCTCGAAAATGAAAGCGAAGCTGTTGAAAGC
AAAGAAGATCCGTCGGAAAGCGATAATTCCGAGACACCACTAAATGAATC
GCAAAACATGGAAAGCGTGGCGAACGGAGAGGATGGCGATAATGAAGAGA
CGTCAGAGGGTGCCACTGTTCAGACGGAGGCCAGCAGTGGTGAACAGACA
GAGGACCCCAGTACAGACAAGAAGGAAGAGAAGGATGAGGACAAGAAAGA
AAATGGGGAGGGGAAAAAAGATGATGATATGGTCATAGACGATAACGCAC
CGCTCTCGTTCCAGTTCAGACCAGAGCTCAGGCAAGTTCAAGTTGCAGTT
GAATTGCTTAACAAGCATCCGAACCCACCTGTGCGGCCGATTCTCAGGGA
TCCACCGTCAGTCAGGAAGGCTAAAGCCGAAGCAAAGGCAGCCGAAGCAG
CTAAGAAGGCAGCAGAGGAGTCCCAGAAGTCTGATGAAGCTGGGGAAACA
GCTATCGAAGGGGAGGGTGTAACGGCAGGCCCTTCAAACGAAGGCACTGT
TCGCAAGGAAGATTCCAACTCTGAAGGCAATGCTGTCGACCTAGATGATG
AGGACGAGGAACTTACTGTTGACAACTTCAACGGTATTCCTGTTTTCCAG
GCAAAAGGGCTGACCTTGTTGCAGAAGAACAAGCAGTTAATTCCTTTGTT
CTTCTCCAAATGGGACCTTGAGGCAGCATGGAAGCAGCTGAAGGATTCTA
ACACAATTGACGTCCCTGGAGATTGTGAAATAGAAGTTGGCACCCTTGAG
GATGTGCTGAGGCGGATGTCCGAAAGCAAGACTGACGAATTCGAATCTGT
ATTCTTCGTGCCGTCGAGGGAGTCAATGAAGGCAATTAATGTAAGGTTTC
CCTTGGACGAATTGGCGCCGCCGTACAGACCTGGTAGTCTTCCGAAGAAG
CAGGTGAAGAAGGCGGGCTATTCGAAGGCTCGCCAGATCGCTGAGAGGGG
AGGAACGAAGGATGAAATCCGCGCTGCTATTCGAGAGGATTTGGAGAAGC
ACATGGAGCGCGAACGCATCGCTGAGGTTCTGGCACAGATTGAACAAGCT
CGTCGTGTGGGAGGAATGGGTACTGCTGCTAGTATGGGCAAGAAGCCAAC
GAAGACTAATAAGGCAAAGGTGCAAGGAGTGAAAGCATGA