Gcaud2924.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2924.t1
Unique NameGcaud2924.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length165
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_92_length_53089_cov_4.692668contigNODE_92_length_53089_cov_4.692668:10157..10743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2711.XP_006489964.1
PFAMsHIT
Max annot lvl35493|Streptophyta
KEGG rclassRC00002
KEGG koko:K01522
KEGG ReactionR00187
KEGG Pathwayko00230,ko05222,ko05223,map00230,map05222,map05223
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016787,GO:0016810,GO:0016811,GO:0016817,GO:0016819,GO:0043530,GO:0044424,GO:0044444,GO:0044464,GO:0047627
Evalue4.87e-49
EggNOG OGsCOG0537@1|root,KOG3379@2759|Eukaryota,37TXH@33090|Viridiplantae,3GHYS@35493|Streptophyta
EC3.6.1.29
DescriptionBis(5'-adenosyl)-triphosphatase-like
COG categoryF
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2924Gcaud2924Gracilaria caudata M_176_S67 malegeneNODE_92_length_53089_cov_4.692668 10157..10743 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2924.t1Gcaud2924.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_92_length_53089_cov_4.692668 10157..10743 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2924.t1.stop1Gcaud2924.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_92_length_53089_cov_4.692668 10157..10159 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2924.t1.CDS1Gcaud2924.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_92_length_53089_cov_4.692668 10157..10545 -
Gcaud2924.t1.CDS2Gcaud2924.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_92_length_53089_cov_4.692668 10638..10743 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2924.t1.exon1Gcaud2924.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_92_length_53089_cov_4.692668 10157..10545 -
Gcaud2924.t1.exon2Gcaud2924.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_92_length_53089_cov_4.692668 10638..10743 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2924.t1.intron1Gcaud2924.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_92_length_53089_cov_4.692668 10546..10637 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2924.t1.start1Gcaud2924.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_92_length_53089_cov_4.692668 10741..10743 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2924.t1 ID=Gcaud2924.t1|Name=Gcaud2924.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=165bp
MTATFNFGPWRCAWSEAFYLSPLSLAMVNHKPIVPGHCLVVSRRVAARVA
DLTSEELADLWKVACNISKPLEKLYEAEALTFALQDGPVAGQTVPHVHIH
ILPRRPGDFKINNEVYHEIEKADLSRSVKVDAEEERKPRSKDEMAEEART
LRSLFSDSLPIPSE*
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spliced messenger RNA

>Gcaud2924.t1 ID=Gcaud2924.t1|Name=Gcaud2924.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=495bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:10157..10743- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGCGACATTCAACTTCGGTCCATGGAGATGTGCCTGGAGTGAAGC
CTTCTATCTTTCCCCGTTATCCCTGGCAATGGTGAACCACAAGCCAATTG
TACCAGGTCATTGTCTCGTGGTAAGTCGCCGCGTAGCCGCCCGTGTCGCG
GACCTAACTTCTGAAGAACTGGCCGATTTATGGAAAGTAGCTTGCAACAT
CTCAAAGCCTCTGGAAAAACTTTACGAGGCAGAGGCGTTAACATTTGCGC
TTCAGGATGGACCCGTCGCAGGACAGACGGTACCACACGTGCATATCCAT
ATTCTTCCACGTCGTCCCGGCGATTTTAAGATTAACAATGAAGTGTATCA
TGAAATTGAGAAGGCAGATCTATCACGGTCGGTGAAGGTTGACGCTGAGG
AAGAACGAAAGCCGCGTTCGAAAGACGAAATGGCTGAGGAGGCTCGCACA
TTGCGCTCTCTTTTCAGCGACTCCCTTCCAATTCCATCGGAATAA
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protein sequence of Gcaud2924.t1

>Gcaud2924.t1 ID=Gcaud2924.t1|Name=Gcaud2924.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=165bp
MTATFNFGPWRCAWSEAFYLSPLSLAMVNHKPIVPGHCLVVSRRVAARVA
DLTSEELADLWKVACNISKPLEKLYEAEALTFALQDGPVAGQTVPHVHIH
ILPRRPGDFKINNEVYHEIEKADLSRSVKVDAEEERKPRSKDEMAEEART
LRSLFSDSLPIPSE*
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mRNA from alignment at NODE_92_length_53089_cov_4.692668:10157..10743-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2924.t1 ID=Gcaud2924.t1|Name=Gcaud2924.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=587bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:10157..10743- (Gracilaria caudata M_176_S67 male)
ATGACAGCGACATTCAACTTCGGTCCATGGAGATGTGCCTGGAGTGAAGC
CTTCTATCTTTCCCCGTTATCCCTGGCAATGGTGAACCACAAGCCAATTG
TACCAGGTAAGCTCTTCGTGCAAACATCACTCCCATGCAGTCAAAAACCA
ACAACAGTCTGACACATTTCCATCCCGCCAAAATTTCATCCATACCAGGT
CATTGTCTCGTGGTAAGTCGCCGCGTAGCCGCCCGTGTCGCGGACCTAAC
TTCTGAAGAACTGGCCGATTTATGGAAAGTAGCTTGCAACATCTCAAAGC
CTCTGGAAAAACTTTACGAGGCAGAGGCGTTAACATTTGCGCTTCAGGAT
GGACCCGTCGCAGGACAGACGGTACCACACGTGCATATCCATATTCTTCC
ACGTCGTCCCGGCGATTTTAAGATTAACAATGAAGTGTATCATGAAATTG
AGAAGGCAGATCTATCACGGTCGGTGAAGGTTGACGCTGAGGAAGAACGA
AAGCCGCGTTCGAAAGACGAAATGGCTGAGGAGGCTCGCACATTGCGCTC
TCTTTTCAGCGACTCCCTTCCAATTCCATCGGAATAA
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Coding sequence (CDS) from alignment at NODE_92_length_53089_cov_4.692668:10157..10743-

>Gcaud2924.t1 ID=Gcaud2924.t1|Name=Gcaud2924.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=495bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:10157..10743- (Gracilaria caudata M_176_S67 male)
ATGACAGCGACATTCAACTTCGGTCCATGGAGATGTGCCTGGAGTGAAGC
CTTCTATCTTTCCCCGTTATCCCTGGCAATGGTGAACCACAAGCCAATTG
TACCAGGTCATTGTCTCGTGGTAAGTCGCCGCGTAGCCGCCCGTGTCGCG
GACCTAACTTCTGAAGAACTGGCCGATTTATGGAAAGTAGCTTGCAACAT
CTCAAAGCCTCTGGAAAAACTTTACGAGGCAGAGGCGTTAACATTTGCGC
TTCAGGATGGACCCGTCGCAGGACAGACGGTACCACACGTGCATATCCAT
ATTCTTCCACGTCGTCCCGGCGATTTTAAGATTAACAATGAAGTGTATCA
TGAAATTGAGAAGGCAGATCTATCACGGTCGGTGAAGGTTGACGCTGAGG
AAGAACGAAAGCCGCGTTCGAAAGACGAAATGGCTGAGGAGGCTCGCACA
TTGCGCTCTCTTTTCAGCGACTCCCTTCCAATTCCATCGGAATAA
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