Gcaud2922.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2922.t1
Unique NameGcaud2922.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length524
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_92_length_53089_cov_4.692668contigNODE_92_length_53089_cov_4.692668:7062..8736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FMK8
PFAMsDUF971,FeS_assembly_P,ParA
Max annot lvl2759|Eukaryota
Evalue1.26e-159
EggNOG OGsCOG0489@1|root,KOG3022@2759|Eukaryota
DescriptionComponent of the cytosolic iron-sulfur (Fe S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. The NBP35-CFD1 heterotetramer forms a Fe-S scaffold complex, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins
COG categoryD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2922Gcaud2922Gracilaria caudata M_176_S67 malegeneNODE_92_length_53089_cov_4.692668 7062..8736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2922.t1Gcaud2922.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_92_length_53089_cov_4.692668 7062..8736 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2922.t1.stop1Gcaud2922.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_92_length_53089_cov_4.692668 7062..7064 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2922.t1.CDS1Gcaud2922.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_92_length_53089_cov_4.692668 7062..8471 -
Gcaud2922.t1.CDS2Gcaud2922.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_92_length_53089_cov_4.692668 8575..8736 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2922.t1.exon1Gcaud2922.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_92_length_53089_cov_4.692668 7062..8471 -
Gcaud2922.t1.exon2Gcaud2922.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_92_length_53089_cov_4.692668 8575..8736 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2922.t1.intron1Gcaud2922.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_92_length_53089_cov_4.692668 8472..8574 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2922.t1.start1Gcaud2922.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_92_length_53089_cov_4.692668 8734..8736 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2922.t1 ID=Gcaud2922.t1|Name=Gcaud2922.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=524bp
LPSKLRVAANFSSIHEHRRGITSASKYRFRFGKHGFRIALVYPSQVFLWL
RSISQDLLDVLSQIIDPDLHQNIVSLGFIKNIALQPVEAIPGIFDVSFDV
ELTTPACPIKDAFQSDCKRLAESLDWVGRANVSMTASDPSQQSSQGTGVL
DYVHAVVAVASCKGGVGKSTTAVNLAFALARQGARVGIMDADIYGPSLPT
LVEPDDRAVQFADGRIQPLTCEGVKLMSFGYVNPDSAIMRGPMIANLLNQ
LLTTTQWGALDYLIIDMPPGTGDIQLTLSQIINITAAVIVTTPQRLSFVD
VVKGIDMFDKVSVPSVAVVENMAYFVAPDTNQQHFIFGKGHKERLVEQYG
LINSFSMPIDAELSEKSDSGIPYVLANPRSLIAEEYGKIASAVVREVAKI
KFGGSRIPEVSFDENSGFIVVRKPNSEQDQQVWPATLRRQCRCALCVDEM
TGRVRLKPEDVPESVKPKNMSPVGNYALSVTWSDGHPSLYPYSRFVDDWE
TPSDGSRSKVEKESAPIGASMAS*
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spliced messenger RNA

>Gcaud2922.t1 ID=Gcaud2922.t1|Name=Gcaud2922.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1572bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:7062..8736- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCCTTCGAAGCTGCGAGTCGCTGCCAACTTCAGCTCAATCCATGAGCA
TCGCAGGGGAATCACTTCTGCCTCTAAGTATAGATTCAGGTTCGGTAAAC
ATGGCTTTCGTATCGCCCTCGTTTACCCATCGCAGGTCTTTCTTTGGCTC
CGCTCAATTTCCCAAGATCTGTTAGATGTATTGTCGCAAATAATTGACCC
TGACTTACATCAAAACATTGTCTCGCTCGGTTTCATCAAAAATATCGCGC
TGCAGCCCGTGGAAGCCATACCTGGGATTTTTGACGTTTCATTCGATGTA
GAGCTTACCACGCCGGCATGTCCGATAAAAGATGCCTTTCAATCCGATTG
CAAACGCCTTGCAGAGAGCTTAGATTGGGTTGGTCGGGCCAATGTCTCAA
TGACTGCTTCTGACCCCTCTCAACAATCTTCCCAAGGAACAGGTGTGTTG
GACTATGTCCACGCGGTTGTGGCTGTAGCAAGCTGCAAGGGTGGTGTGGG
AAAGAGTACTACTGCTGTGAATCTTGCGTTTGCACTTGCTCGTCAAGGCG
CTCGTGTCGGGATCATGGATGCTGATATTTATGGCCCAAGTCTCCCGACG
TTGGTAGAGCCGGACGATAGAGCAGTTCAGTTTGCAGATGGTCGAATTCA
ACCGCTTACGTGCGAAGGAGTGAAGCTCATGTCATTTGGATACGTCAATC
CAGATTCCGCCATAATGAGGGGTCCTATGATTGCAAACTTGCTCAACCAA
CTTCTCACGACGACACAGTGGGGCGCTCTAGACTACCTTATCATTGATAT
GCCACCGGGCACCGGCGACATCCAGCTAACGCTCAGCCAGATAATTAACA
TTACCGCTGCAGTTATCGTTACCACACCTCAACGGCTGTCGTTTGTTGAC
GTTGTAAAAGGCATTGACATGTTTGATAAGGTCAGTGTTCCAAGCGTGGC
TGTTGTGGAGAATATGGCATACTTTGTCGCACCTGACACCAACCAGCAGC
ACTTCATTTTTGGAAAAGGACATAAGGAACGTCTTGTTGAACAGTATGGG
TTGATAAATTCCTTCTCGATGCCAATTGACGCGGAGTTGTCAGAGAAGAG
CGATTCTGGGATTCCATACGTCCTCGCCAACCCTAGGTCTCTTATCGCGG
AAGAGTACGGTAAAATAGCTTCCGCTGTAGTAAGAGAAGTGGCGAAAATC
AAGTTTGGAGGCTCGCGAATTCCTGAAGTGTCGTTCGACGAGAATTCCGG
GTTTATTGTCGTGAGAAAACCCAATTCCGAGCAAGATCAACAAGTCTGGC
CTGCCACTCTCCGGCGACAATGTCGATGTGCACTTTGTGTTGATGAGATG
ACAGGACGGGTACGACTGAAGCCAGAAGATGTTCCGGAATCTGTGAAACC
CAAGAACATGAGTCCCGTCGGAAATTATGCGCTTTCTGTCACATGGAGTG
ACGGACATCCCAGTCTCTACCCATACTCCAGATTTGTCGACGACTGGGAG
ACCCCGAGTGATGGCAGTCGTTCGAAGGTTGAGAAGGAAAGTGCACCAAT
AGGAGCTTCGATGGCTTCGTAG
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protein sequence of Gcaud2922.t1

>Gcaud2922.t1 ID=Gcaud2922.t1|Name=Gcaud2922.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=524bp
LPSKLRVAANFSSIHEHRRGITSASKYRFRFGKHGFRIALVYPSQVFLWL
RSISQDLLDVLSQIIDPDLHQNIVSLGFIKNIALQPVEAIPGIFDVSFDV
ELTTPACPIKDAFQSDCKRLAESLDWVGRANVSMTASDPSQQSSQGTGVL
DYVHAVVAVASCKGGVGKSTTAVNLAFALARQGARVGIMDADIYGPSLPT
LVEPDDRAVQFADGRIQPLTCEGVKLMSFGYVNPDSAIMRGPMIANLLNQ
LLTTTQWGALDYLIIDMPPGTGDIQLTLSQIINITAAVIVTTPQRLSFVD
VVKGIDMFDKVSVPSVAVVENMAYFVAPDTNQQHFIFGKGHKERLVEQYG
LINSFSMPIDAELSEKSDSGIPYVLANPRSLIAEEYGKIASAVVREVAKI
KFGGSRIPEVSFDENSGFIVVRKPNSEQDQQVWPATLRRQCRCALCVDEM
TGRVRLKPEDVPESVKPKNMSPVGNYALSVTWSDGHPSLYPYSRFVDDWE
TPSDGSRSKVEKESAPIGASMAS*
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mRNA from alignment at NODE_92_length_53089_cov_4.692668:7062..8736-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2922.t1 ID=Gcaud2922.t1|Name=Gcaud2922.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1675bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:7062..8736- (Gracilaria caudata M_176_S67 male)
CTGCCTTCGAAGCTGCGAGTCGCTGCCAACTTCAGCTCAATCCATGAGCA
TCGCAGGGGAATCACTTCTGCCTCTAAGTATAGATTCAGGTTCGGTAAAC
ATGGCTTTCGTATCGCCCTCGTTTACCCATCGCAGGTCTTTCTTTGGCTC
CGCTCAATTTCCGTGCGTTTCTTCGCCGTCCGTCTCCAAGGGAGCTTTTC
AGAAGCGGCATCGCTGTCGTCGCATTCCCGTTGCTTGTCTCCCAAATACT
GACACAGACCGAAAGCAAGATCTGTTAGATGTATTGTCGCAAATAATTGA
CCCTGACTTACATCAAAACATTGTCTCGCTCGGTTTCATCAAAAATATCG
CGCTGCAGCCCGTGGAAGCCATACCTGGGATTTTTGACGTTTCATTCGAT
GTAGAGCTTACCACGCCGGCATGTCCGATAAAAGATGCCTTTCAATCCGA
TTGCAAACGCCTTGCAGAGAGCTTAGATTGGGTTGGTCGGGCCAATGTCT
CAATGACTGCTTCTGACCCCTCTCAACAATCTTCCCAAGGAACAGGTGTG
TTGGACTATGTCCACGCGGTTGTGGCTGTAGCAAGCTGCAAGGGTGGTGT
GGGAAAGAGTACTACTGCTGTGAATCTTGCGTTTGCACTTGCTCGTCAAG
GCGCTCGTGTCGGGATCATGGATGCTGATATTTATGGCCCAAGTCTCCCG
ACGTTGGTAGAGCCGGACGATAGAGCAGTTCAGTTTGCAGATGGTCGAAT
TCAACCGCTTACGTGCGAAGGAGTGAAGCTCATGTCATTTGGATACGTCA
ATCCAGATTCCGCCATAATGAGGGGTCCTATGATTGCAAACTTGCTCAAC
CAACTTCTCACGACGACACAGTGGGGCGCTCTAGACTACCTTATCATTGA
TATGCCACCGGGCACCGGCGACATCCAGCTAACGCTCAGCCAGATAATTA
ACATTACCGCTGCAGTTATCGTTACCACACCTCAACGGCTGTCGTTTGTT
GACGTTGTAAAAGGCATTGACATGTTTGATAAGGTCAGTGTTCCAAGCGT
GGCTGTTGTGGAGAATATGGCATACTTTGTCGCACCTGACACCAACCAGC
AGCACTTCATTTTTGGAAAAGGACATAAGGAACGTCTTGTTGAACAGTAT
GGGTTGATAAATTCCTTCTCGATGCCAATTGACGCGGAGTTGTCAGAGAA
GAGCGATTCTGGGATTCCATACGTCCTCGCCAACCCTAGGTCTCTTATCG
CGGAAGAGTACGGTAAAATAGCTTCCGCTGTAGTAAGAGAAGTGGCGAAA
ATCAAGTTTGGAGGCTCGCGAATTCCTGAAGTGTCGTTCGACGAGAATTC
CGGGTTTATTGTCGTGAGAAAACCCAATTCCGAGCAAGATCAACAAGTCT
GGCCTGCCACTCTCCGGCGACAATGTCGATGTGCACTTTGTGTTGATGAG
ATGACAGGACGGGTACGACTGAAGCCAGAAGATGTTCCGGAATCTGTGAA
ACCCAAGAACATGAGTCCCGTCGGAAATTATGCGCTTTCTGTCACATGGA
GTGACGGACATCCCAGTCTCTACCCATACTCCAGATTTGTCGACGACTGG
GAGACCCCGAGTGATGGCAGTCGTTCGAAGGTTGAGAAGGAAAGTGCACC
AATAGGAGCTTCGATGGCTTCGTAG
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Coding sequence (CDS) from alignment at NODE_92_length_53089_cov_4.692668:7062..8736-

>Gcaud2922.t1 ID=Gcaud2922.t1|Name=Gcaud2922.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1572bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:7062..8736- (Gracilaria caudata M_176_S67 male)
CTGCCTTCGAAGCTGCGAGTCGCTGCCAACTTCAGCTCAATCCATGAGCA
TCGCAGGGGAATCACTTCTGCCTCTAAGTATAGATTCAGGTTCGGTAAAC
ATGGCTTTCGTATCGCCCTCGTTTACCCATCGCAGGTCTTTCTTTGGCTC
CGCTCAATTTCCCAAGATCTGTTAGATGTATTGTCGCAAATAATTGACCC
TGACTTACATCAAAACATTGTCTCGCTCGGTTTCATCAAAAATATCGCGC
TGCAGCCCGTGGAAGCCATACCTGGGATTTTTGACGTTTCATTCGATGTA
GAGCTTACCACGCCGGCATGTCCGATAAAAGATGCCTTTCAATCCGATTG
CAAACGCCTTGCAGAGAGCTTAGATTGGGTTGGTCGGGCCAATGTCTCAA
TGACTGCTTCTGACCCCTCTCAACAATCTTCCCAAGGAACAGGTGTGTTG
GACTATGTCCACGCGGTTGTGGCTGTAGCAAGCTGCAAGGGTGGTGTGGG
AAAGAGTACTACTGCTGTGAATCTTGCGTTTGCACTTGCTCGTCAAGGCG
CTCGTGTCGGGATCATGGATGCTGATATTTATGGCCCAAGTCTCCCGACG
TTGGTAGAGCCGGACGATAGAGCAGTTCAGTTTGCAGATGGTCGAATTCA
ACCGCTTACGTGCGAAGGAGTGAAGCTCATGTCATTTGGATACGTCAATC
CAGATTCCGCCATAATGAGGGGTCCTATGATTGCAAACTTGCTCAACCAA
CTTCTCACGACGACACAGTGGGGCGCTCTAGACTACCTTATCATTGATAT
GCCACCGGGCACCGGCGACATCCAGCTAACGCTCAGCCAGATAATTAACA
TTACCGCTGCAGTTATCGTTACCACACCTCAACGGCTGTCGTTTGTTGAC
GTTGTAAAAGGCATTGACATGTTTGATAAGGTCAGTGTTCCAAGCGTGGC
TGTTGTGGAGAATATGGCATACTTTGTCGCACCTGACACCAACCAGCAGC
ACTTCATTTTTGGAAAAGGACATAAGGAACGTCTTGTTGAACAGTATGGG
TTGATAAATTCCTTCTCGATGCCAATTGACGCGGAGTTGTCAGAGAAGAG
CGATTCTGGGATTCCATACGTCCTCGCCAACCCTAGGTCTCTTATCGCGG
AAGAGTACGGTAAAATAGCTTCCGCTGTAGTAAGAGAAGTGGCGAAAATC
AAGTTTGGAGGCTCGCGAATTCCTGAAGTGTCGTTCGACGAGAATTCCGG
GTTTATTGTCGTGAGAAAACCCAATTCCGAGCAAGATCAACAAGTCTGGC
CTGCCACTCTCCGGCGACAATGTCGATGTGCACTTTGTGTTGATGAGATG
ACAGGACGGGTACGACTGAAGCCAGAAGATGTTCCGGAATCTGTGAAACC
CAAGAACATGAGTCCCGTCGGAAATTATGCGCTTTCTGTCACATGGAGTG
ACGGACATCCCAGTCTCTACCCATACTCCAGATTTGTCGACGACTGGGAG
ACCCCGAGTGATGGCAGTCGTTCGAAGGTTGAGAAGGAAAGTGCACCAAT
AGGAGCTTCGATGGCTTCGTAG
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