Gcaud2915.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2915.t1
Unique Name	Gcaud2915.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	635

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_18_length_79438_cov_4.566121	contig	NODE_18_length_79438_cov_4.566121:74607..76690 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1168034.FH5T_06490
Max annot lvl	976\|Bacteroidetes
Evalue	2.19e-17
EggNOG OGs	COG3291@1\|root,COG4447@1\|root,COG3291@2\|Bacteria,COG4447@2\|Bacteria,4NGJJ@976\|Bacteroidetes,2FRXF@200643\|Bacteroidia
Description	Pkd domain containing protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2915	Gcaud2915	Gracilaria caudata M_176_S67 male	gene	NODE_18_length_79438_cov_4.566121 74607..76690 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2915.t1	Gcaud2915.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_18_length_79438_cov_4.566121 74607..76690 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2915.t1.start1	Gcaud2915.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_18_length_79438_cov_4.566121 74607..74609 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2915.t1.CDS1	Gcaud2915.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_18_length_79438_cov_4.566121 74607..76284 +
Gcaud2915.t1.CDS2	Gcaud2915.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_18_length_79438_cov_4.566121 76464..76690 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2915.t1.exon1	Gcaud2915.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_18_length_79438_cov_4.566121 74607..76284 +
Gcaud2915.t1.exon2	Gcaud2915.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_18_length_79438_cov_4.566121 76464..76690 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2915.t1.intron1	Gcaud2915.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_18_length_79438_cov_4.566121 76285..76463 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2915.t1.stop1	Gcaud2915.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_18_length_79438_cov_4.566121 76688..76690 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_18_length_79438_cov_4.566121:74607..76690+
coding sequence from alignment at NODE_18_length_79438_cov_4.566121:74607..76690+

mRNA sequence

>Gcaud2915.t1 ID=Gcaud2915.t1|Name=Gcaud2915.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=635bp
MLTPLSWSPRTLTSILLYLLLASLTRQSSAVPLRSAEAVPDHWAQLLNAD
RYELVPRPSWTTSASHSHTNSSHFSSRATLRDHVPSSASKYAQLNLDLKP
VSRTKIFKGKGNRSTFECHVHDPPQGIRIDAVIAKVISVCEESWTSSETV
LMQLSFADLGAPETLANGGGTFFVKMKDTFDTVLPVAAAEAVRGRDLNGN
RKGDGRFDVLVTVNLKTPWYDGIDANCPPEQYDLVTVILHEVYHNLLFAG
SIMAEVEDNPQVQGGVLQTATLYKGYRTRFDSFLMNANKCSVLSYLTDQQ
LSSDTGLTTNQLLADAVCNDQLYWGFGDTNAAKLHSPRIFKRKSSIYHLD
PNGSEPVDSLMFPTVTRGTAQHVVSERILFMQRVSLDPKIPGANIACPKP
LTPPTPQQPIPQGQTNTDVFHGAITPNIVVAEEGSVGGFPTWGIVLLALF
AFLLLAALLGLCLALCLRKGKLPSITSSLKSPFSSITLGDSTSTSSRGYG
ASSSRSSTSKTTLSTFGWSKSRPKKSSSKHTTKHSSVSTSTKPKTKDSST
HGKKTCPSSGDEEDMQVNDHGLLQMLLLQVRAIYLQIKFAVLQVFVEVQF
KLIPQVYNVNVAQVIMQESDTTIDEATVYEATVY*

spliced messenger RNA

>Gcaud2915.t1 ID=Gcaud2915.t1|Name=Gcaud2915.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1905bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:74607..76690+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCACCCCATTGTCGTGGTCTCCACGCACGCTTACAAGCATTCTGCT
CTACCTTCTTCTCGCATCGCTTACCCGCCAGTCTTCTGCCGTTCCCCTCC
GCTCCGCGGAAGCTGTTCCCGATCATTGGGCACAGCTGCTGAATGCTGAT
CGTTATGAACTCGTGCCGCGCCCCTCATGGACTACCAGCGCGTCGCACTC
ACACACCAACTCTTCGCACTTCTCATCCCGGGCCACGCTTCGGGATCATG
TCCCTTCTTCAGCTTCCAAATACGCTCAGCTCAACCTCGATCTTAAACCT
GTCAGCCGTACAAAGATCTTCAAGGGAAAGGGCAACAGATCCACCTTCGA
ATGTCACGTGCACGACCCACCGCAGGGCATCAGAATTGACGCTGTTATCG
CAAAGGTCATAAGTGTCTGCGAGGAATCTTGGACCTCCTCGGAAACAGTT
CTCATGCAGTTATCGTTTGCCGATCTCGGCGCTCCCGAAACTCTTGCAAA
CGGTGGAGGTACTTTCTTCGTTAAAATGAAGGACACATTTGACACCGTTC
TTCCGGTTGCCGCCGCTGAAGCTGTGCGCGGAAGAGACCTCAATGGGAAC
AGAAAGGGCGATGGTCGTTTTGATGTATTGGTCACGGTCAACCTCAAAAC
TCCGTGGTACGATGGTATCGACGCAAATTGCCCCCCGGAGCAGTATGACC
TTGTGACTGTTATCCTGCACGAAGTGTATCACAATCTGCTTTTCGCAGGT
AGCATAATGGCCGAAGTTGAAGACAACCCGCAGGTGCAAGGTGGCGTGTT
GCAGACAGCGACGCTCTACAAGGGGTATCGCACCCGCTTTGACTCCTTCC
TCATGAATGCCAACAAGTGCTCGGTTCTCAGTTACCTCACAGATCAACAG
CTTTCTTCCGACACTGGCCTTACAACCAATCAGTTGCTTGCAGACGCTGT
GTGCAACGACCAGCTCTATTGGGGGTTTGGCGATACAAACGCAGCCAAGC
TTCATTCACCAAGGATTTTCAAAAGGAAGAGTTCAATCTATCACCTTGAT
CCCAATGGATCAGAACCGGTGGATAGCCTTATGTTCCCCACGGTCACACG
CGGTACCGCCCAACATGTCGTCAGCGAAAGAATTCTTTTTATGCAACGCG
TATCTCTCGATCCGAAGATTCCCGGTGCAAATATTGCATGCCCTAAGCCA
TTGACCCCGCCTACCCCTCAACAACCGATTCCGCAGGGACAAACCAATAC
TGACGTGTTCCATGGAGCGATCACACCGAACATCGTTGTGGCTGAAGAGG
GTAGCGTTGGCGGGTTTCCCACATGGGGAATTGTTCTGCTAGCGTTGTTT
GCATTCCTCCTTCTCGCTGCTTTGCTGGGACTCTGTCTTGCTCTCTGTCT
TCGCAAAGGGAAACTTCCATCAATCACCAGCTCACTCAAGAGTCCATTCT
CATCAATCACACTGGGAGATTCCACTTCGACTTCTTCGCGCGGCTATGGG
GCGTCTTCATCCAGATCTTCAACATCGAAGACCACCCTTAGTACGTTCGG
TTGGTCAAAGAGCAGGCCAAAGAAATCGTCTTCCAAGCATACCACAAAAC
ACTCTTCGGTGTCCACCTCCACCAAGCCCAAGACGAAGGATTCATCAACG
CATGGCAAAAAAACATGCCCGTCGTCCGGCGACGAAGAAGACATGCAAGT
CAACGACCATGGTTTGTTGCAAATGCTACTGTTGCAAGTACGAGCCATCT
ACTTGCAAATCAAGTTCGCGGTGTTGCAAGTCTTCGTCGAAGTGCAGTTC
AAGCTCATCCCCCAAGTGTACAACGTCAACGTCGCACAAGTCATCATGCA
AGAGAGTGACACCACCATCGACGAAGCCACCGTCTACGAAGCCACCGTCT
ACTAA

protein sequence of Gcaud2915.t1

>Gcaud2915.t1 ID=Gcaud2915.t1|Name=Gcaud2915.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=635bp
MLTPLSWSPRTLTSILLYLLLASLTRQSSAVPLRSAEAVPDHWAQLLNAD
RYELVPRPSWTTSASHSHTNSSHFSSRATLRDHVPSSASKYAQLNLDLKP
VSRTKIFKGKGNRSTFECHVHDPPQGIRIDAVIAKVISVCEESWTSSETV
LMQLSFADLGAPETLANGGGTFFVKMKDTFDTVLPVAAAEAVRGRDLNGN
RKGDGRFDVLVTVNLKTPWYDGIDANCPPEQYDLVTVILHEVYHNLLFAG
SIMAEVEDNPQVQGGVLQTATLYKGYRTRFDSFLMNANKCSVLSYLTDQQ
LSSDTGLTTNQLLADAVCNDQLYWGFGDTNAAKLHSPRIFKRKSSIYHLD
PNGSEPVDSLMFPTVTRGTAQHVVSERILFMQRVSLDPKIPGANIACPKP
LTPPTPQQPIPQGQTNTDVFHGAITPNIVVAEEGSVGGFPTWGIVLLALF
AFLLLAALLGLCLALCLRKGKLPSITSSLKSPFSSITLGDSTSTSSRGYG
ASSSRSSTSKTTLSTFGWSKSRPKKSSSKHTTKHSSVSTSTKPKTKDSST
HGKKTCPSSGDEEDMQVNDHGLLQMLLLQVRAIYLQIKFAVLQVFVEVQF
KLIPQVYNVNVAQVIMQESDTTIDEATVYEATVY*

mRNA from alignment at NODE_18_length_79438_cov_4.566121:74607..76690+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2915.t1 ID=Gcaud2915.t1|Name=Gcaud2915.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2084bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:74607..76690+ (Gracilaria caudata M_176_S67 male)
ATGCTCACCCCATTGTCGTGGTCTCCACGCACGCTTACAAGCATTCTGCT
CTACCTTCTTCTCGCATCGCTTACCCGCCAGTCTTCTGCCGTTCCCCTCC
GCTCCGCGGAAGCTGTTCCCGATCATTGGGCACAGCTGCTGAATGCTGAT
CGTTATGAACTCGTGCCGCGCCCCTCATGGACTACCAGCGCGTCGCACTC
ACACACCAACTCTTCGCACTTCTCATCCCGGGCCACGCTTCGGGATCATG
TCCCTTCTTCAGCTTCCAAATACGCTCAGCTCAACCTCGATCTTAAACCT
GTCAGCCGTACAAAGATCTTCAAGGGAAAGGGCAACAGATCCACCTTCGA
ATGTCACGTGCACGACCCACCGCAGGGCATCAGAATTGACGCTGTTATCG
CAAAGGTCATAAGTGTCTGCGAGGAATCTTGGACCTCCTCGGAAACAGTT
CTCATGCAGTTATCGTTTGCCGATCTCGGCGCTCCCGAAACTCTTGCAAA
CGGTGGAGGTACTTTCTTCGTTAAAATGAAGGACACATTTGACACCGTTC
TTCCGGTTGCCGCCGCTGAAGCTGTGCGCGGAAGAGACCTCAATGGGAAC
AGAAAGGGCGATGGTCGTTTTGATGTATTGGTCACGGTCAACCTCAAAAC
TCCGTGGTACGATGGTATCGACGCAAATTGCCCCCCGGAGCAGTATGACC
TTGTGACTGTTATCCTGCACGAAGTGTATCACAATCTGCTTTTCGCAGGT
AGCATAATGGCCGAAGTTGAAGACAACCCGCAGGTGCAAGGTGGCGTGTT
GCAGACAGCGACGCTCTACAAGGGGTATCGCACCCGCTTTGACTCCTTCC
TCATGAATGCCAACAAGTGCTCGGTTCTCAGTTACCTCACAGATCAACAG
CTTTCTTCCGACACTGGCCTTACAACCAATCAGTTGCTTGCAGACGCTGT
GTGCAACGACCAGCTCTATTGGGGGTTTGGCGATACAAACGCAGCCAAGC
TTCATTCACCAAGGATTTTCAAAAGGAAGAGTTCAATCTATCACCTTGAT
CCCAATGGATCAGAACCGGTGGATAGCCTTATGTTCCCCACGGTCACACG
CGGTACCGCCCAACATGTCGTCAGCGAAAGAATTCTTTTTATGCAACGCG
TATCTCTCGATCCGAAGATTCCCGGTGCAAATATTGCATGCCCTAAGCCA
TTGACCCCGCCTACCCCTCAACAACCGATTCCGCAGGGACAAACCAATAC
TGACGTGTTCCATGGAGCGATCACACCGAACATCGTTGTGGCTGAAGAGG
GTAGCGTTGGCGGGTTTCCCACATGGGGAATTGTTCTGCTAGCGTTGTTT
GCATTCCTCCTTCTCGCTGCTTTGCTGGGACTCTGTCTTGCTCTCTGTCT
TCGCAAAGGGAAACTTCCATCAATCACCAGCTCACTCAAGAGTCCATTCT
CATCAATCACACTGGGAGATTCCACTTCGACTTCTTCGCGCGGCTATGGG
GCGTCTTCATCCAGATCTTCAACATCGAAGACCACCCTTAGTACGTTCGG
TTGGTCAAAGAGCAGGCCAAAGAAATCGTCTTCCAAGCATACCACAAAAC
ACTCTTCGGTGTCCACCTCCACCAAGCCCAAGACGAAGGATTCATCAACG
CATGGCAAAAAAACATGCCCGTCGTCCGGTAAGTGTGTGGACAAGTGTTA
CTGTATGTTTTGCACACCGGTTGCCCCCCCACCTCCAGTTGCCTCTGTGC
ATCGCTATGAGCCAGACTGCACTCCGGTTGTTTACAAGTGCAAGCACAAG
TGTCGGAAGCATTGCTCCCACAAATCGTCGCGTAAGCACTCTCACACATG
TGAAAAGGCGACGAAGAAGACATGCAAGTCAACGACCATGGTTTGTTGCA
AATGCTACTGTTGCAAGTACGAGCCATCTACTTGCAAATCAAGTTCGCGG
TGTTGCAAGTCTTCGTCGAAGTGCAGTTCAAGCTCATCCCCCAAGTGTAC
AACGTCAACGTCGCACAAGTCATCATGCAAGAGAGTGACACCACCATCGA
CGAAGCCACCGTCTACGAAGCCACCGTCTACTAA

Coding sequence (CDS) from alignment at NODE_18_length_79438_cov_4.566121:74607..76690+

>Gcaud2915.t1 ID=Gcaud2915.t1|Name=Gcaud2915.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1905bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:74607..76690+ (Gracilaria caudata M_176_S67 male)
ATGCTCACCCCATTGTCGTGGTCTCCACGCACGCTTACAAGCATTCTGCT
CTACCTTCTTCTCGCATCGCTTACCCGCCAGTCTTCTGCCGTTCCCCTCC
GCTCCGCGGAAGCTGTTCCCGATCATTGGGCACAGCTGCTGAATGCTGAT
CGTTATGAACTCGTGCCGCGCCCCTCATGGACTACCAGCGCGTCGCACTC
ACACACCAACTCTTCGCACTTCTCATCCCGGGCCACGCTTCGGGATCATG
TCCCTTCTTCAGCTTCCAAATACGCTCAGCTCAACCTCGATCTTAAACCT
GTCAGCCGTACAAAGATCTTCAAGGGAAAGGGCAACAGATCCACCTTCGA
ATGTCACGTGCACGACCCACCGCAGGGCATCAGAATTGACGCTGTTATCG
CAAAGGTCATAAGTGTCTGCGAGGAATCTTGGACCTCCTCGGAAACAGTT
CTCATGCAGTTATCGTTTGCCGATCTCGGCGCTCCCGAAACTCTTGCAAA
CGGTGGAGGTACTTTCTTCGTTAAAATGAAGGACACATTTGACACCGTTC
TTCCGGTTGCCGCCGCTGAAGCTGTGCGCGGAAGAGACCTCAATGGGAAC
AGAAAGGGCGATGGTCGTTTTGATGTATTGGTCACGGTCAACCTCAAAAC
TCCGTGGTACGATGGTATCGACGCAAATTGCCCCCCGGAGCAGTATGACC
TTGTGACTGTTATCCTGCACGAAGTGTATCACAATCTGCTTTTCGCAGGT
AGCATAATGGCCGAAGTTGAAGACAACCCGCAGGTGCAAGGTGGCGTGTT
GCAGACAGCGACGCTCTACAAGGGGTATCGCACCCGCTTTGACTCCTTCC
TCATGAATGCCAACAAGTGCTCGGTTCTCAGTTACCTCACAGATCAACAG
CTTTCTTCCGACACTGGCCTTACAACCAATCAGTTGCTTGCAGACGCTGT
GTGCAACGACCAGCTCTATTGGGGGTTTGGCGATACAAACGCAGCCAAGC
TTCATTCACCAAGGATTTTCAAAAGGAAGAGTTCAATCTATCACCTTGAT
CCCAATGGATCAGAACCGGTGGATAGCCTTATGTTCCCCACGGTCACACG
CGGTACCGCCCAACATGTCGTCAGCGAAAGAATTCTTTTTATGCAACGCG
TATCTCTCGATCCGAAGATTCCCGGTGCAAATATTGCATGCCCTAAGCCA
TTGACCCCGCCTACCCCTCAACAACCGATTCCGCAGGGACAAACCAATAC
TGACGTGTTCCATGGAGCGATCACACCGAACATCGTTGTGGCTGAAGAGG
GTAGCGTTGGCGGGTTTCCCACATGGGGAATTGTTCTGCTAGCGTTGTTT
GCATTCCTCCTTCTCGCTGCTTTGCTGGGACTCTGTCTTGCTCTCTGTCT
TCGCAAAGGGAAACTTCCATCAATCACCAGCTCACTCAAGAGTCCATTCT
CATCAATCACACTGGGAGATTCCACTTCGACTTCTTCGCGCGGCTATGGG
GCGTCTTCATCCAGATCTTCAACATCGAAGACCACCCTTAGTACGTTCGG
TTGGTCAAAGAGCAGGCCAAAGAAATCGTCTTCCAAGCATACCACAAAAC
ACTCTTCGGTGTCCACCTCCACCAAGCCCAAGACGAAGGATTCATCAACG
CATGGCAAAAAAACATGCCCGTCGTCCGGCGACGAAGAAGACATGCAAGT
CAACGACCATGGTTTGTTGCAAATGCTACTGTTGCAAGTACGAGCCATCT
ACTTGCAAATCAAGTTCGCGGTGTTGCAAGTCTTCGTCGAAGTGCAGTTC
AAGCTCATCCCCCAAGTGTACAACGTCAACGTCGCACAAGTCATCATGCA
AGAGAGTGACACCACCATCGACGAAGCCACCGTCTACGAAGCCACCGTCT
ACTAA