Gcaud2910.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2910.t1
Unique Name	Gcaud2910.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	201

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_18_length_79438_cov_4.566121	contig	NODE_18_length_79438_cov_4.566121:54017..54696 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2910	Gcaud2910	Gracilaria caudata M_176_S67 male	gene	NODE_18_length_79438_cov_4.566121 54017..54696 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2910.t1	Gcaud2910.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_18_length_79438_cov_4.566121 54017..54696 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2910.t1.start1	Gcaud2910.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_18_length_79438_cov_4.566121 54017..54019 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2910.t1.CDS1	Gcaud2910.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_18_length_79438_cov_4.566121 54017..54114 +
Gcaud2910.t1.CDS2	Gcaud2910.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_18_length_79438_cov_4.566121 54192..54696 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2910.t1.exon1	Gcaud2910.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_18_length_79438_cov_4.566121 54017..54114 +
Gcaud2910.t1.exon2	Gcaud2910.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_18_length_79438_cov_4.566121 54192..54696 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2910.t1.intron1	Gcaud2910.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_18_length_79438_cov_4.566121 54115..54191 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2910.t1.stop1	Gcaud2910.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_18_length_79438_cov_4.566121 54694..54696 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_18_length_79438_cov_4.566121:54017..54696+
coding sequence from alignment at NODE_18_length_79438_cov_4.566121:54017..54696+

mRNA sequence

>Gcaud2910.t1 ID=Gcaud2910.t1|Name=Gcaud2910.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=201bp
MKLIILVAVVFLIANTSNATFCKANGVADNVNKYSSFDTFGSVVVKCPIE
ITWKTVGNAKTWFQAVIGRQLINITLVEGNGRQLQSKINYFVIPVISNAP
AGRTQQRVLSLSDFDYELVTAFDSSTLPLLPWTTFVRLERVTFLENRVNY
TLITFAQQGNINVPEEKRPLIRNQVQSLFYSVFAPSLKEAFDDCEHSKTL
*

spliced messenger RNA

>Gcaud2910.t1 ID=Gcaud2910.t1|Name=Gcaud2910.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=603bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:54017..54696+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACTTATTATCCTCGTCGCAGTAGTCTTTCTTATCGCAAACACATC
AAACGCCACTTTCTGCAAGGCGAACGGTGTGGCAGACAACGTCAACAAAT
ATTCTAGCTTCGACACATTTGGCAGTGTTGTCGTAAAATGTCCAATAGAA
ATCACCTGGAAGACAGTGGGCAACGCGAAGACCTGGTTTCAAGCCGTGAT
TGGAAGGCAGCTCATCAATATCACGCTCGTAGAAGGCAACGGTCGTCAAT
TGCAGAGCAAGATCAACTACTTTGTCATCCCCGTAATATCAAATGCACCA
GCTGGCCGGACGCAACAACGGGTACTTTCGCTGTCTGACTTTGATTATGA
ATTGGTCACCGCGTTTGACTCCTCGACGTTACCTCTTCTACCTTGGACGA
CTTTTGTGAGACTTGAGCGCGTGACGTTCTTGGAAAATCGAGTCAACTAC
ACGCTTATCACTTTTGCGCAGCAAGGAAACATTAATGTACCTGAAGAAAA
ACGCCCCTTGATTCGCAATCAGGTGCAATCACTGTTTTATAGTGTGTTCG
CGCCGTCTTTGAAAGAGGCATTTGACGACTGTGAGCATTCAAAGACGCTT
TAA

protein sequence of Gcaud2910.t1

>Gcaud2910.t1 ID=Gcaud2910.t1|Name=Gcaud2910.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=201bp
MKLIILVAVVFLIANTSNATFCKANGVADNVNKYSSFDTFGSVVVKCPIE
ITWKTVGNAKTWFQAVIGRQLINITLVEGNGRQLQSKINYFVIPVISNAP
AGRTQQRVLSLSDFDYELVTAFDSSTLPLLPWTTFVRLERVTFLENRVNY
TLITFAQQGNINVPEEKRPLIRNQVQSLFYSVFAPSLKEAFDDCEHSKTL
*

mRNA from alignment at NODE_18_length_79438_cov_4.566121:54017..54696+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2910.t1 ID=Gcaud2910.t1|Name=Gcaud2910.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=680bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:54017..54696+ (Gracilaria caudata M_176_S67 male)
ATGAAACTTATTATCCTCGTCGCAGTAGTCTTTCTTATCGCAAACACATC
AAACGCCACTTTCTGCAAGGCGAACGGTGTGGCAGACAACGTCAACAAGT
GCGTATTCGTCGCATAATCTATTGCGTTCATTCAGTACTAACTCGAATGT
TTTGTTTTGTTTCATGAGTCGACAGATATTCTAGCTTCGACACATTTGGC
AGTGTTGTCGTAAAATGTCCAATAGAAATCACCTGGAAGACAGTGGGCAA
CGCGAAGACCTGGTTTCAAGCCGTGATTGGAAGGCAGCTCATCAATATCA
CGCTCGTAGAAGGCAACGGTCGTCAATTGCAGAGCAAGATCAACTACTTT
GTCATCCCCGTAATATCAAATGCACCAGCTGGCCGGACGCAACAACGGGT
ACTTTCGCTGTCTGACTTTGATTATGAATTGGTCACCGCGTTTGACTCCT
CGACGTTACCTCTTCTACCTTGGACGACTTTTGTGAGACTTGAGCGCGTG
ACGTTCTTGGAAAATCGAGTCAACTACACGCTTATCACTTTTGCGCAGCA
AGGAAACATTAATGTACCTGAAGAAAAACGCCCCTTGATTCGCAATCAGG
TGCAATCACTGTTTTATAGTGTGTTCGCGCCGTCTTTGAAAGAGGCATTT
GACGACTGTGAGCATTCAAAGACGCTTTAA

Coding sequence (CDS) from alignment at NODE_18_length_79438_cov_4.566121:54017..54696+

>Gcaud2910.t1 ID=Gcaud2910.t1|Name=Gcaud2910.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=603bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:54017..54696+ (Gracilaria caudata M_176_S67 male)
ATGAAACTTATTATCCTCGTCGCAGTAGTCTTTCTTATCGCAAACACATC
AAACGCCACTTTCTGCAAGGCGAACGGTGTGGCAGACAACGTCAACAAAT
ATTCTAGCTTCGACACATTTGGCAGTGTTGTCGTAAAATGTCCAATAGAA
ATCACCTGGAAGACAGTGGGCAACGCGAAGACCTGGTTTCAAGCCGTGAT
TGGAAGGCAGCTCATCAATATCACGCTCGTAGAAGGCAACGGTCGTCAAT
TGCAGAGCAAGATCAACTACTTTGTCATCCCCGTAATATCAAATGCACCA
GCTGGCCGGACGCAACAACGGGTACTTTCGCTGTCTGACTTTGATTATGA
ATTGGTCACCGCGTTTGACTCCTCGACGTTACCTCTTCTACCTTGGACGA
CTTTTGTGAGACTTGAGCGCGTGACGTTCTTGGAAAATCGAGTCAACTAC
ACGCTTATCACTTTTGCGCAGCAAGGAAACATTAATGTACCTGAAGAAAA
ACGCCCCTTGATTCGCAATCAGGTGCAATCACTGTTTTATAGTGTGTTCG
CGCCGTCTTTGAAAGAGGCATTTGACGACTGTGAGCATTCAAAGACGCTT
TAA