Gcaud2906.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2906.t1
Unique Name	Gcaud2906.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	428

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_18_length_79438_cov_4.566121	contig	NODE_18_length_79438_cov_4.566121:38556..39839 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704310.1
PFAMs	Asp
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01379,ko:K04521,ko:K06002,ko:K07747
KEGG Pathway	ko04071,ko04140,ko04142,ko04210,ko04915,ko04974,ko05010,ko05152,map04071,map04140,map04142,map04210,map04915,map04974,map05010,map05152
Evalue	1.38e-42
EggNOG OGs	KOG1339@1\|root,KOG1339@2759\|Eukaryota
EC	3.4.23.1,3.4.23.45,3.4.23.46,3.4.23.5
Description	aspartic-type endopeptidase activity
COG category	M
BRITE	ko00000,ko00001,ko01000,ko01002,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2906	Gcaud2906	Gracilaria caudata M_176_S67 male	gene	NODE_18_length_79438_cov_4.566121 38556..39839 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2906.t1.stop1	Gcaud2906.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_18_length_79438_cov_4.566121 38556..38558 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2906.t1.CDS1	Gcaud2906.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_18_length_79438_cov_4.566121 38556..39839 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2906.t1.exon1	Gcaud2906.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_18_length_79438_cov_4.566121 38556..39839 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2906.t1.start1	Gcaud2906.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_18_length_79438_cov_4.566121 39837..39839 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2906.t1	Gcaud2906.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_18_length_79438_cov_4.566121 38556..39839 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_18_length_79438_cov_4.566121:38556..39839-
coding sequence from alignment at NODE_18_length_79438_cov_4.566121:38556..39839-

mRNA sequence

>Gcaud2906.t1 ID=Gcaud2906.t1|Name=Gcaud2906.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=428bp
MFYGDGSSGNGTLYRDTLRIGSLHASILLGAMHEESRNFELPYTDGVLGM
AFKQGACHPACIPPAMDAIVNQTGIQNVFTICVSRFGGTLVLGAADESLS
TSEYKYVPLQDALDPNRYVVPAKPEWILGNRTMSAPSITAAVWSTATTQI
AFSKSTFLNLLDHLMEHYCHIPDLCSTYSWFRPQLCSFIPEESVAAMPSI
TIPFTDEVSITLSPDDYLIKYRVVDGKRHRCVAMIATDSLLEKGYGLLLG
SAVMKRYAVVFDRGSHRVGVAKANTKNCGPETGSEEGLPGGREERDQGEV
LTADAAPALLTDSDQDSKEEERLEEAEVCRAQKTCSACSKQSNCSFGYQT
GRCVPIREATGMPYPFCTGALCACFAVGGSGWYFGIVIGALLGLAIVFVL
VLIYRKRNQRNRYQMLEQYEEQDIETF*

spliced messenger RNA

>Gcaud2906.t1 ID=Gcaud2906.t1|Name=Gcaud2906.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:38556..39839- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTATGGTGACGGCTCTAGCGGCAATGGTACATTGTACAGGGACAC
TCTTCGCATTGGAAGTCTTCACGCATCCATACTTCTCGGCGCCATGCACG
AAGAGTCTCGTAATTTTGAGCTGCCGTACACAGATGGAGTCCTTGGCATG
GCCTTCAAACAAGGTGCATGTCATCCCGCTTGCATCCCTCCGGCCATGGA
TGCAATAGTCAACCAAACAGGCATTCAAAATGTTTTCACCATCTGCGTAT
CTCGTTTCGGCGGCACTCTTGTACTCGGCGCCGCTGATGAATCGCTCTCC
ACATCCGAGTACAAGTATGTTCCTCTGCAAGATGCACTCGATCCGAACCG
CTATGTCGTCCCGGCCAAGCCGGAATGGATACTCGGAAACCGAACAATGA
GTGCTCCTTCTATCACAGCAGCTGTATGGTCAACAGCTACTACGCAGATA
GCGTTCTCTAAGTCAACGTTTCTTAATCTTTTAGATCACCTCATGGAGCA
TTACTGTCATATTCCAGATCTTTGCAGTACGTACAGCTGGTTCCGACCTC
AATTATGCTCCTTCATTCCGGAGGAGTCAGTCGCAGCTATGCCAAGCATA
ACCATTCCTTTTACGGATGAAGTTTCTATCACACTGAGCCCGGATGACTA
TCTCATAAAGTACCGAGTAGTTGATGGCAAGAGGCATCGGTGCGTCGCAA
TGATAGCCACTGACAGTCTCCTTGAGAAAGGTTACGGTTTATTGCTTGGT
TCGGCAGTTATGAAAAGGTATGCTGTGGTATTCGATCGTGGATCACACAG
AGTGGGTGTTGCGAAAGCCAATACGAAAAACTGCGGGCCAGAGACTGGAT
CTGAAGAAGGACTACCTGGAGGAAGAGAAGAAAGAGATCAAGGCGAGGTG
CTCACTGCCGACGCTGCACCTGCACTTCTCACCGATTCGGACCAGGACAG
CAAAGAGGAGGAACGATTAGAAGAAGCTGAAGTATGCCGCGCTCAAAAGA
CCTGTTCAGCGTGCTCCAAACAATCCAACTGTAGCTTTGGCTACCAAACA
GGCCGCTGTGTCCCTATCCGTGAAGCGACCGGAATGCCTTATCCGTTCTG
CACTGGGGCACTTTGTGCCTGTTTTGCGGTGGGAGGTTCTGGATGGTACT
TTGGAATTGTAATAGGGGCTTTGCTTGGGCTCGCAATTGTTTTTGTCTTG
GTGTTGATTTATCGAAAGAGAAACCAGCGAAATCGGTATCAAATGCTTGA
GCAGTACGAAGAGCAAGACATTGAGACGTTTTAG

protein sequence of Gcaud2906.t1

>Gcaud2906.t1 ID=Gcaud2906.t1|Name=Gcaud2906.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=428bp
MFYGDGSSGNGTLYRDTLRIGSLHASILLGAMHEESRNFELPYTDGVLGM
AFKQGACHPACIPPAMDAIVNQTGIQNVFTICVSRFGGTLVLGAADESLS
TSEYKYVPLQDALDPNRYVVPAKPEWILGNRTMSAPSITAAVWSTATTQI
AFSKSTFLNLLDHLMEHYCHIPDLCSTYSWFRPQLCSFIPEESVAAMPSI
TIPFTDEVSITLSPDDYLIKYRVVDGKRHRCVAMIATDSLLEKGYGLLLG
SAVMKRYAVVFDRGSHRVGVAKANTKNCGPETGSEEGLPGGREERDQGEV
LTADAAPALLTDSDQDSKEEERLEEAEVCRAQKTCSACSKQSNCSFGYQT
GRCVPIREATGMPYPFCTGALCACFAVGGSGWYFGIVIGALLGLAIVFVL
VLIYRKRNQRNRYQMLEQYEEQDIETF*

mRNA from alignment at NODE_18_length_79438_cov_4.566121:38556..39839-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2906.t1 ID=Gcaud2906.t1|Name=Gcaud2906.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:38556..39839- (Gracilaria caudata M_176_S67 male)
ATGTTTTATGGTGACGGCTCTAGCGGCAATGGTACATTGTACAGGGACAC
TCTTCGCATTGGAAGTCTTCACGCATCCATACTTCTCGGCGCCATGCACG
AAGAGTCTCGTAATTTTGAGCTGCCGTACACAGATGGAGTCCTTGGCATG
GCCTTCAAACAAGGTGCATGTCATCCCGCTTGCATCCCTCCGGCCATGGA
TGCAATAGTCAACCAAACAGGCATTCAAAATGTTTTCACCATCTGCGTAT
CTCGTTTCGGCGGCACTCTTGTACTCGGCGCCGCTGATGAATCGCTCTCC
ACATCCGAGTACAAGTATGTTCCTCTGCAAGATGCACTCGATCCGAACCG
CTATGTCGTCCCGGCCAAGCCGGAATGGATACTCGGAAACCGAACAATGA
GTGCTCCTTCTATCACAGCAGCTGTATGGTCAACAGCTACTACGCAGATA
GCGTTCTCTAAGTCAACGTTTCTTAATCTTTTAGATCACCTCATGGAGCA
TTACTGTCATATTCCAGATCTTTGCAGTACGTACAGCTGGTTCCGACCTC
AATTATGCTCCTTCATTCCGGAGGAGTCAGTCGCAGCTATGCCAAGCATA
ACCATTCCTTTTACGGATGAAGTTTCTATCACACTGAGCCCGGATGACTA
TCTCATAAAGTACCGAGTAGTTGATGGCAAGAGGCATCGGTGCGTCGCAA
TGATAGCCACTGACAGTCTCCTTGAGAAAGGTTACGGTTTATTGCTTGGT
TCGGCAGTTATGAAAAGGTATGCTGTGGTATTCGATCGTGGATCACACAG
AGTGGGTGTTGCGAAAGCCAATACGAAAAACTGCGGGCCAGAGACTGGAT
CTGAAGAAGGACTACCTGGAGGAAGAGAAGAAAGAGATCAAGGCGAGGTG
CTCACTGCCGACGCTGCACCTGCACTTCTCACCGATTCGGACCAGGACAG
CAAAGAGGAGGAACGATTAGAAGAAGCTGAAGTATGCCGCGCTCAAAAGA
CCTGTTCAGCGTGCTCCAAACAATCCAACTGTAGCTTTGGCTACCAAACA
GGCCGCTGTGTCCCTATCCGTGAAGCGACCGGAATGCCTTATCCGTTCTG
CACTGGGGCACTTTGTGCCTGTTTTGCGGTGGGAGGTTCTGGATGGTACT
TTGGAATTGTAATAGGGGCTTTGCTTGGGCTCGCAATTGTTTTTGTCTTG
GTGTTGATTTATCGAAAGAGAAACCAGCGAAATCGGTATCAAATGCTTGA
GCAGTACGAAGAGCAAGACATTGAGACGTTTTAG

Coding sequence (CDS) from alignment at NODE_18_length_79438_cov_4.566121:38556..39839-

>Gcaud2906.t1 ID=Gcaud2906.t1|Name=Gcaud2906.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1284bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:38556..39839- (Gracilaria caudata M_176_S67 male)
ATGTTTTATGGTGACGGCTCTAGCGGCAATGGTACATTGTACAGGGACAC
TCTTCGCATTGGAAGTCTTCACGCATCCATACTTCTCGGCGCCATGCACG
AAGAGTCTCGTAATTTTGAGCTGCCGTACACAGATGGAGTCCTTGGCATG
GCCTTCAAACAAGGTGCATGTCATCCCGCTTGCATCCCTCCGGCCATGGA
TGCAATAGTCAACCAAACAGGCATTCAAAATGTTTTCACCATCTGCGTAT
CTCGTTTCGGCGGCACTCTTGTACTCGGCGCCGCTGATGAATCGCTCTCC
ACATCCGAGTACAAGTATGTTCCTCTGCAAGATGCACTCGATCCGAACCG
CTATGTCGTCCCGGCCAAGCCGGAATGGATACTCGGAAACCGAACAATGA
GTGCTCCTTCTATCACAGCAGCTGTATGGTCAACAGCTACTACGCAGATA
GCGTTCTCTAAGTCAACGTTTCTTAATCTTTTAGATCACCTCATGGAGCA
TTACTGTCATATTCCAGATCTTTGCAGTACGTACAGCTGGTTCCGACCTC
AATTATGCTCCTTCATTCCGGAGGAGTCAGTCGCAGCTATGCCAAGCATA
ACCATTCCTTTTACGGATGAAGTTTCTATCACACTGAGCCCGGATGACTA
TCTCATAAAGTACCGAGTAGTTGATGGCAAGAGGCATCGGTGCGTCGCAA
TGATAGCCACTGACAGTCTCCTTGAGAAAGGTTACGGTTTATTGCTTGGT
TCGGCAGTTATGAAAAGGTATGCTGTGGTATTCGATCGTGGATCACACAG
AGTGGGTGTTGCGAAAGCCAATACGAAAAACTGCGGGCCAGAGACTGGAT
CTGAAGAAGGACTACCTGGAGGAAGAGAAGAAAGAGATCAAGGCGAGGTG
CTCACTGCCGACGCTGCACCTGCACTTCTCACCGATTCGGACCAGGACAG
CAAAGAGGAGGAACGATTAGAAGAAGCTGAAGTATGCCGCGCTCAAAAGA
CCTGTTCAGCGTGCTCCAAACAATCCAACTGTAGCTTTGGCTACCAAACA
GGCCGCTGTGTCCCTATCCGTGAAGCGACCGGAATGCCTTATCCGTTCTG
CACTGGGGCACTTTGTGCCTGTTTTGCGGTGGGAGGTTCTGGATGGTACT
TTGGAATTGTAATAGGGGCTTTGCTTGGGCTCGCAATTGTTTTTGTCTTG
GTGTTGATTTATCGAAAGAGAAACCAGCGAAATCGGTATCAAATGCTTGA
GCAGTACGAAGAGCAAGACATTGAGACGTTTTAG