Gcaud2903.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2903.t1
Unique NameGcaud2903.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length432
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_18_length_79438_cov_4.566121contigNODE_18_length_79438_cov_4.566121:26497..28527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705514.1
PFAMsMFS_1
Max annot lvl2759|Eukaryota
Evalue2.14e-25
EggNOG OGs2EXAK@1|root,2SZ0C@2759|Eukaryota
DescriptionMajor Facilitator Superfamily
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2903Gcaud2903Gracilaria caudata M_176_S67 malegeneNODE_18_length_79438_cov_4.566121 26497..28527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2903.t1Gcaud2903.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_18_length_79438_cov_4.566121 26497..28527 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2903.t1.start1Gcaud2903.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_18_length_79438_cov_4.566121 26497..26499 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2903.t1.CDS1Gcaud2903.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_18_length_79438_cov_4.566121 26497..27646 +
Gcaud2903.t1.CDS2Gcaud2903.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_18_length_79438_cov_4.566121 27741..27797 +
Gcaud2903.t1.CDS3Gcaud2903.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_18_length_79438_cov_4.566121 28278..28359 +
Gcaud2903.t1.CDS4Gcaud2903.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_18_length_79438_cov_4.566121 28521..28527 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2903.t1.exon1Gcaud2903.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_18_length_79438_cov_4.566121 26497..27646 +
Gcaud2903.t1.exon2Gcaud2903.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_18_length_79438_cov_4.566121 27741..27797 +
Gcaud2903.t1.exon3Gcaud2903.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_18_length_79438_cov_4.566121 28278..28359 +
Gcaud2903.t1.exon4Gcaud2903.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_18_length_79438_cov_4.566121 28521..28527 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2903.t1.intron1Gcaud2903.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_18_length_79438_cov_4.566121 27647..27740 +
Gcaud2903.t1.intron2Gcaud2903.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_18_length_79438_cov_4.566121 27798..28277 +
Gcaud2903.t1.intron3Gcaud2903.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_18_length_79438_cov_4.566121 28360..28520 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2903.t1.stop1Gcaud2903.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_18_length_79438_cov_4.566121 28525..28527 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2903.t1 ID=Gcaud2903.t1|Name=Gcaud2903.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=432bp
MSAAPPNRNAANTTTASQSATKAPGKWSVVAAASVVHALHAAAVYMVPST
LLSPMRHTLNLTVAEITRPLITYRIVQTLFLLPAGLLLDAVGPQLCLRVA
MTAAALSAPLLPLATSLNQLVALQVFYALTKLIGGLSAMLLIVTSAFPSD
DGVGTATSVLLSGYSFAGFLAPAVIGSLSEKIGWRSASMLISMLFAIACV
PLTFYFLREHPSSRRRPSIPMLLKQLEKRYNAFRSLQSGSTSANHSQLTD
QVNAQKQGAIQEPTAADGKVKELLFPVPYVLIAISVFAFSFSMHIVFDHL
LVFLTEDFGLPFDKATLFMSALNLVALLSKLAVGPLADRYNKSLLLALFG
AVAALSCLLLLDFSLLVFQTTSSLVKVMAFVLFYSIGYAAVFSLTTSVLP
EFGNALHGNLYPGANQVSVEVISPHQPSRLH*
back to top

spliced messenger RNA

>Gcaud2903.t1 ID=Gcaud2903.t1|Name=Gcaud2903.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1296bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:26497..28527+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCCGCTCCGCCTAATCGAAATGCAGCAAACACGACCACCGCCTC
GCAGTCCGCCACAAAAGCCCCCGGGAAATGGTCTGTCGTGGCCGCTGCCT
CAGTCGTTCACGCGCTTCATGCCGCTGCTGTGTACATGGTGCCTTCTACT
TTGCTTTCCCCGATGCGACATACTCTCAATCTCACTGTGGCGGAAATCAC
ACGTCCCTTAATTACGTACCGTATCGTGCAAACCCTGTTCTTGCTTCCTG
CCGGCTTGCTCCTTGATGCCGTTGGTCCACAACTGTGTCTTCGCGTCGCA
ATGACTGCTGCAGCTTTATCAGCTCCCCTTTTGCCCCTGGCCACTTCCCT
AAATCAGCTGGTCGCGCTTCAAGTTTTCTATGCACTCACCAAACTCATCG
GGGGATTATCTGCTATGTTGCTCATTGTCACATCGGCGTTTCCGAGCGAT
GACGGAGTTGGCACTGCCACTAGTGTCTTGTTGAGTGGTTACTCTTTTGC
TGGGTTTTTGGCACCTGCAGTTATTGGTTCTCTTTCTGAGAAGATAGGAT
GGCGATCTGCGAGCATGTTGATTTCTATGCTCTTCGCTATCGCATGTGTG
CCACTCACATTTTATTTTCTCAGAGAACATCCCTCTTCTCGCCGCCGTCC
ATCGATTCCCATGCTTTTGAAGCAGCTTGAGAAACGGTACAATGCTTTCA
GGTCTTTGCAATCAGGTTCTACGTCTGCAAATCATTCGCAATTAACCGAT
CAGGTAAATGCTCAGAAACAAGGTGCAATACAAGAACCAACTGCCGCCGA
CGGAAAAGTCAAGGAACTGCTTTTTCCAGTACCCTATGTTCTAATCGCGA
TTTCAGTGTTTGCTTTTTCGTTCTCCATGCACATTGTATTTGATCATCTT
CTGGTATTCCTAACCGAAGATTTCGGTCTACCATTTGACAAGGCAACGTT
ATTTATGTCAGCTCTGAATCTTGTTGCGCTTCTCTCAAAACTTGCGGTTG
GCCCCCTGGCTGATCGATATAATAAGTCTCTTCTCTTGGCACTTTTTGGA
GCCGTTGCTGCTCTCTCATGCTTACTGCTTCTTGACTTCTCTTTGCTTGT
GTTCCAAACGACTTCAAGTCTGGTCAAAGTAATGGCGTTTGTCCTTTTCT
ATTCGATAGGATATGCTGCAGTCTTCAGTCTCACCACCTCCGTGCTACCA
GAATTTGGCAACGCTCTTCACGGAAATCTTTATCCAGGTGCGAATCAAGT
GAGCGTTGAAGTCATTTCACCCCATCAGCCATCCAGACTTCACTAA
back to top

protein sequence of Gcaud2903.t1

>Gcaud2903.t1 ID=Gcaud2903.t1|Name=Gcaud2903.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=432bp
MSAAPPNRNAANTTTASQSATKAPGKWSVVAAASVVHALHAAAVYMVPST
LLSPMRHTLNLTVAEITRPLITYRIVQTLFLLPAGLLLDAVGPQLCLRVA
MTAAALSAPLLPLATSLNQLVALQVFYALTKLIGGLSAMLLIVTSAFPSD
DGVGTATSVLLSGYSFAGFLAPAVIGSLSEKIGWRSASMLISMLFAIACV
PLTFYFLREHPSSRRRPSIPMLLKQLEKRYNAFRSLQSGSTSANHSQLTD
QVNAQKQGAIQEPTAADGKVKELLFPVPYVLIAISVFAFSFSMHIVFDHL
LVFLTEDFGLPFDKATLFMSALNLVALLSKLAVGPLADRYNKSLLLALFG
AVAALSCLLLLDFSLLVFQTTSSLVKVMAFVLFYSIGYAAVFSLTTSVLP
EFGNALHGNLYPGANQVSVEVISPHQPSRLH*
back to top

mRNA from alignment at NODE_18_length_79438_cov_4.566121:26497..28527+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2903.t1 ID=Gcaud2903.t1|Name=Gcaud2903.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2031bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:26497..28527+ (Gracilaria caudata M_176_S67 male)
ATGTCCGCCGCTCCGCCTAATCGAAATGCAGCAAACACGACCACCGCCTC
GCAGTCCGCCACAAAAGCCCCCGGGAAATGGTCTGTCGTGGCCGCTGCCT
CAGTCGTTCACGCGCTTCATGCCGCTGCTGTGTACATGGTGCCTTCTACT
TTGCTTTCCCCGATGCGACATACTCTCAATCTCACTGTGGCGGAAATCAC
ACGTCCCTTAATTACGTACCGTATCGTGCAAACCCTGTTCTTGCTTCCTG
CCGGCTTGCTCCTTGATGCCGTTGGTCCACAACTGTGTCTTCGCGTCGCA
ATGACTGCTGCAGCTTTATCAGCTCCCCTTTTGCCCCTGGCCACTTCCCT
AAATCAGCTGGTCGCGCTTCAAGTTTTCTATGCACTCACCAAACTCATCG
GGGGATTATCTGCTATGTTGCTCATTGTCACATCGGCGTTTCCGAGCGAT
GACGGAGTTGGCACTGCCACTAGTGTCTTGTTGAGTGGTTACTCTTTTGC
TGGGTTTTTGGCACCTGCAGTTATTGGTTCTCTTTCTGAGAAGATAGGAT
GGCGATCTGCGAGCATGTTGATTTCTATGCTCTTCGCTATCGCATGTGTG
CCACTCACATTTTATTTTCTCAGAGAACATCCCTCTTCTCGCCGCCGTCC
ATCGATTCCCATGCTTTTGAAGCAGCTTGAGAAACGGTACAATGCTTTCA
GGTCTTTGCAATCAGGTTCTACGTCTGCAAATCATTCGCAATTAACCGAT
CAGGTAAATGCTCAGAAACAAGGTGCAATACAAGAACCAACTGCCGCCGA
CGGAAAAGTCAAGGAACTGCTTTTTCCAGTACCCTATGTTCTAATCGCGA
TTTCAGTGTTTGCTTTTTCGTTCTCCATGCACATTGTATTTGATCATCTT
CTGGTATTCCTAACCGAAGATTTCGGTCTACCATTTGACAAGGCAACGTT
ATTTATGTCAGCTCTGAATCTTGTTGCGCTTCTCTCAAAACTTGCGGTTG
GCCCCCTGGCTGATCGATATAATAAGTCTCTTCTCTTGGCACTTTTTGGA
GCCGTTGCTGCTCTCTCATGCTTACTGCTTCTTGACTTCTCTTTGCTTGT
GTTCCAAACGACTTCAAGTCTGGTCAAAGTAATGGCGTTTGTCCTTTTCT
GTAAGTCATGAATTCGTCTTGTTTTCTGCTCGAGCCAGTTGAGAAATATG
TGCTAACCAAAAGGTTAAACTTTATGTGTTTCCGTATTCGACAGATTCGA
TAGGATATGCTGCAGTCTTCAGTCTCACCACCTCCGTGCTACCAGAATTT
GGTAAGCAAAAACTTGGATTCAGATCCAACTTCAATCTCATGGTTCTCTT
TGCCTCTGGATCACTAGGATCGTATCTTTCTGCCGCTGCGCGTTCTTCCT
CTGGTTCCTACAAGTGGGCTTTCGCGTGGAATGCTTGCTCGTGGTTGTTC
GTCATCCTCTCTGGGCTTGTCAAGTACCTCTTTTATGACAGTCAACGAAA
ACCAAATTCTAAGATTCCTGACAAAAACCCCGCTCCTCCCAAGACAAGCG
CAGACTGAGATCACTTGTCAGCTGATGGATATATAACTTCATATCAGCAG
AAAGCATACGCATACCGGATGAGATCTTCGCATGAAACTAGCCTTTCAAT
GATACATATGATCTGCGCTGAAGAGAAAAAGCAAGCGCTGTACATGGTCT
CCTCAGGTTGAAATGTTCACGTAACGACTGTAATTACACTTCGTGGGGAG
AATCTCTATGCCCAATTTTCTATCCTTGTAGGCAACGCTCTTCACGGAAA
TCTTTATCCAGGTGCGAATCAAGTGAGCGTTGAAGTCATTTCACCCCATC
AGCCATCCAGACTGTACGTATCAAGCTTCCGTCTGTGGATACAACTGATA
GATGCGTGCCATCACGACATCTGTGTGATGTCCATCGCTCACGTTTGAAC
AGAAGTCTTCCAGATCTACAAGGGCAACAGGGTCCGTCACCGAAAACTTT
AACCTATTCTACTCTGTTCTGCAGTCACTAA
back to top

Coding sequence (CDS) from alignment at NODE_18_length_79438_cov_4.566121:26497..28527+

>Gcaud2903.t1 ID=Gcaud2903.t1|Name=Gcaud2903.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1296bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:26497..28527+ (Gracilaria caudata M_176_S67 male)
ATGTCCGCCGCTCCGCCTAATCGAAATGCAGCAAACACGACCACCGCCTC
GCAGTCCGCCACAAAAGCCCCCGGGAAATGGTCTGTCGTGGCCGCTGCCT
CAGTCGTTCACGCGCTTCATGCCGCTGCTGTGTACATGGTGCCTTCTACT
TTGCTTTCCCCGATGCGACATACTCTCAATCTCACTGTGGCGGAAATCAC
ACGTCCCTTAATTACGTACCGTATCGTGCAAACCCTGTTCTTGCTTCCTG
CCGGCTTGCTCCTTGATGCCGTTGGTCCACAACTGTGTCTTCGCGTCGCA
ATGACTGCTGCAGCTTTATCAGCTCCCCTTTTGCCCCTGGCCACTTCCCT
AAATCAGCTGGTCGCGCTTCAAGTTTTCTATGCACTCACCAAACTCATCG
GGGGATTATCTGCTATGTTGCTCATTGTCACATCGGCGTTTCCGAGCGAT
GACGGAGTTGGCACTGCCACTAGTGTCTTGTTGAGTGGTTACTCTTTTGC
TGGGTTTTTGGCACCTGCAGTTATTGGTTCTCTTTCTGAGAAGATAGGAT
GGCGATCTGCGAGCATGTTGATTTCTATGCTCTTCGCTATCGCATGTGTG
CCACTCACATTTTATTTTCTCAGAGAACATCCCTCTTCTCGCCGCCGTCC
ATCGATTCCCATGCTTTTGAAGCAGCTTGAGAAACGGTACAATGCTTTCA
GGTCTTTGCAATCAGGTTCTACGTCTGCAAATCATTCGCAATTAACCGAT
CAGGTAAATGCTCAGAAACAAGGTGCAATACAAGAACCAACTGCCGCCGA
CGGAAAAGTCAAGGAACTGCTTTTTCCAGTACCCTATGTTCTAATCGCGA
TTTCAGTGTTTGCTTTTTCGTTCTCCATGCACATTGTATTTGATCATCTT
CTGGTATTCCTAACCGAAGATTTCGGTCTACCATTTGACAAGGCAACGTT
ATTTATGTCAGCTCTGAATCTTGTTGCGCTTCTCTCAAAACTTGCGGTTG
GCCCCCTGGCTGATCGATATAATAAGTCTCTTCTCTTGGCACTTTTTGGA
GCCGTTGCTGCTCTCTCATGCTTACTGCTTCTTGACTTCTCTTTGCTTGT
GTTCCAAACGACTTCAAGTCTGGTCAAAGTAATGGCGTTTGTCCTTTTCT
ATTCGATAGGATATGCTGCAGTCTTCAGTCTCACCACCTCCGTGCTACCA
GAATTTGGCAACGCTCTTCACGGAAATCTTTATCCAGGTGCGAATCAAGT
GAGCGTTGAAGTCATTTCACCCCATCAGCCATCCAGACTTCACTAA
back to top