Gcaud2899.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2899.t1
Unique Name	Gcaud2899.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	526

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_18_length_79438_cov_4.566121	contig	NODE_18_length_79438_cov_4.566121:16121..17698 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3694.POPTR_0001s17340.1
PFAMs	Utp12,WD40
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K14558
KEGG Pathway	ko03008,map03008
GOs	GO:0000028,GO:0000151,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009553,GO:0009743,GO:0009744,GO:0009987,GO:0010033,GO:0010119,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031461,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034285,GO:0034388,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0048229,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080008,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901700,GO:1902494,GO:1990234,GO:1990904
Evalue	1.68e-122
EggNOG OGs	KOG0291@1\|root,KOG0291@2759\|Eukaryota,37JUR@33090\|Viridiplantae,3GFQ5@35493\|Streptophyta,4JFF9@91835\|fabids
Description	Periodic tryptophan protein
COG category	A
BRITE	ko00000,ko00001,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2899	Gcaud2899	Gracilaria caudata M_176_S67 male	gene	NODE_18_length_79438_cov_4.566121 16121..18880 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2899.t1.stop1	Gcaud2899.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_18_length_79438_cov_4.566121 16121..16123 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2899.t1.CDS1	Gcaud2899.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_18_length_79438_cov_4.566121 16121..17698 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2899.t1.exon1	Gcaud2899.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_18_length_79438_cov_4.566121 16121..17698 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2899.t1.start1	Gcaud2899.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_18_length_79438_cov_4.566121 17696..17698 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2899.t1	Gcaud2899.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_18_length_79438_cov_4.566121 16121..17698 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_18_length_79438_cov_4.566121:16121..17698-
coding sequence from alignment at NODE_18_length_79438_cov_4.566121:16121..17698-

mRNA sequence

>Gcaud2899.t1 ID=Gcaud2899.t1|Name=Gcaud2899.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=526bp
MATAVAFSPDGRAVATGSKDGRVKLWGVATGFCAATFSDHSASVTSLAFA
ANDVIISSSLDGTVRAFDIRRYRNFRVMVGPPPRRQFGCVAADAAGELVA
AGCVDTFEVLVWSLRTGQVLEILNGHRGPVSGVSFRPARGTLASSSWDRT
VRLWDMYERKGTCEVLEHSKEVMDVTFRPDGKELAACTTSGEIVLWDPER
ASITGTIDGARDSAPGRLRGSRTAAPQKGRFQTLSYSADGRFLFAGAAAK
NVCVYHVAEGSRPTLVNKIAATHNQDFDGLKHKLNSKNLTISGHVMNTME
DDDEQAEDYEEARIANGRSLPGAVSEQKLRRKKLLKAEVICVRTCATGRL
WAAVTPEGVLVYGEDEGEEADELLFDPTNLEIDITPEAAKKAAEEGDYVT
GLSLALRLNERAVLNFVVERVPVALIDEVARAVPVLYFNRLVHLFAWRLD
NTPHLEFNLRWAKELILAHGGSVHRSVPDPSTVNTALRSLNRACRAHSRR
LVPVCDKNEHMLEYLLTLSRQTAQS*

spliced messenger RNA

>Gcaud2899.t1 ID=Gcaud2899.t1|Name=Gcaud2899.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1578bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:16121..17698- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACAGCAGTTGCGTTCAGTCCCGACGGGCGCGCGGTTGCAACAGG
TTCGAAAGATGGACGGGTCAAGCTATGGGGAGTGGCAACTGGATTCTGCG
CGGCAACTTTCTCTGATCATTCGGCGTCAGTTACATCTCTTGCTTTTGCT
GCCAACGACGTAATTATCTCGTCTTCTCTAGATGGCACTGTCCGAGCGTT
TGATATTCGACGATATCGCAATTTCCGCGTCATGGTGGGTCCGCCACCAA
GACGGCAATTCGGATGCGTCGCAGCGGATGCGGCGGGTGAACTTGTTGCA
GCGGGCTGTGTAGACACATTTGAAGTCCTGGTATGGTCATTGCGTACCGG
TCAAGTACTAGAGATCCTGAATGGTCACAGAGGTCCTGTTAGCGGGGTTT
CATTTCGTCCAGCAAGAGGCACGCTCGCCAGTTCATCATGGGATCGCACC
GTGCGACTTTGGGATATGTACGAGCGGAAGGGAACATGTGAAGTCTTGGA
GCATAGCAAAGAAGTCATGGATGTTACCTTCCGCCCTGACGGTAAGGAGC
TTGCCGCCTGTACCACTTCAGGGGAAATCGTGCTGTGGGATCCGGAGAGA
GCCTCTATCACGGGCACTATAGACGGAGCCCGAGACTCTGCTCCTGGTCG
GCTTCGTGGTTCGCGGACTGCAGCACCTCAGAAGGGACGGTTTCAAACTT
TGAGCTACTCGGCAGATGGTAGATTCTTGTTCGCTGGAGCCGCCGCGAAG
AACGTCTGTGTCTACCATGTTGCTGAAGGGAGCAGGCCGACGCTAGTCAA
CAAAATTGCGGCGACACATAATCAAGACTTTGACGGTCTAAAACATAAGT
TGAATTCAAAGAATCTTACAATCAGTGGCCATGTGATGAATACTATGGAA
GACGATGACGAACAGGCTGAGGATTATGAAGAGGCACGGATTGCTAACGG
AAGGTCGCTTCCAGGGGCTGTGTCCGAGCAAAAACTGCGTCGAAAGAAGC
TCTTAAAGGCGGAAGTGATCTGCGTCAGGACGTGCGCCACGGGTCGTTTA
TGGGCTGCGGTAACTCCTGAAGGTGTTTTGGTTTACGGAGAAGATGAAGG
CGAAGAAGCAGATGAGCTCTTGTTTGACCCTACGAACTTGGAAATAGATA
TAACCCCTGAGGCAGCAAAAAAGGCCGCTGAAGAAGGTGATTACGTGACA
GGTCTCTCACTGGCTTTGAGATTGAACGAGAGAGCCGTATTGAACTTTGT
CGTCGAAAGGGTACCGGTGGCCTTGATTGACGAGGTTGCCAGGGCCGTCC
CAGTTTTGTACTTCAACCGCCTCGTTCATTTGTTCGCATGGCGTTTAGAT
AACACTCCTCACCTCGAGTTTAACTTGCGCTGGGCGAAAGAGTTGATTCT
TGCGCATGGGGGAAGCGTACATCGGAGCGTTCCGGACCCGTCAACCGTTA
ATACGGCATTGCGGTCGTTGAATCGCGCATGTCGAGCCCACTCGCGACGA
CTGGTCCCTGTGTGCGATAAGAACGAACATATGCTGGAGTACCTCCTCAC
ACTGAGCCGACAGACGGCCCAGTCATGA

protein sequence of Gcaud2899.t1

>Gcaud2899.t1 ID=Gcaud2899.t1|Name=Gcaud2899.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=526bp
MATAVAFSPDGRAVATGSKDGRVKLWGVATGFCAATFSDHSASVTSLAFA
ANDVIISSSLDGTVRAFDIRRYRNFRVMVGPPPRRQFGCVAADAAGELVA
AGCVDTFEVLVWSLRTGQVLEILNGHRGPVSGVSFRPARGTLASSSWDRT
VRLWDMYERKGTCEVLEHSKEVMDVTFRPDGKELAACTTSGEIVLWDPER
ASITGTIDGARDSAPGRLRGSRTAAPQKGRFQTLSYSADGRFLFAGAAAK
NVCVYHVAEGSRPTLVNKIAATHNQDFDGLKHKLNSKNLTISGHVMNTME
DDDEQAEDYEEARIANGRSLPGAVSEQKLRRKKLLKAEVICVRTCATGRL
WAAVTPEGVLVYGEDEGEEADELLFDPTNLEIDITPEAAKKAAEEGDYVT
GLSLALRLNERAVLNFVVERVPVALIDEVARAVPVLYFNRLVHLFAWRLD
NTPHLEFNLRWAKELILAHGGSVHRSVPDPSTVNTALRSLNRACRAHSRR
LVPVCDKNEHMLEYLLTLSRQTAQS*

mRNA from alignment at NODE_18_length_79438_cov_4.566121:16121..17698-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2899.t1 ID=Gcaud2899.t1|Name=Gcaud2899.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1578bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:16121..17698- (Gracilaria caudata M_176_S67 male)
ATGGCCACAGCAGTTGCGTTCAGTCCCGACGGGCGCGCGGTTGCAACAGG
TTCGAAAGATGGACGGGTCAAGCTATGGGGAGTGGCAACTGGATTCTGCG
CGGCAACTTTCTCTGATCATTCGGCGTCAGTTACATCTCTTGCTTTTGCT
GCCAACGACGTAATTATCTCGTCTTCTCTAGATGGCACTGTCCGAGCGTT
TGATATTCGACGATATCGCAATTTCCGCGTCATGGTGGGTCCGCCACCAA
GACGGCAATTCGGATGCGTCGCAGCGGATGCGGCGGGTGAACTTGTTGCA
GCGGGCTGTGTAGACACATTTGAAGTCCTGGTATGGTCATTGCGTACCGG
TCAAGTACTAGAGATCCTGAATGGTCACAGAGGTCCTGTTAGCGGGGTTT
CATTTCGTCCAGCAAGAGGCACGCTCGCCAGTTCATCATGGGATCGCACC
GTGCGACTTTGGGATATGTACGAGCGGAAGGGAACATGTGAAGTCTTGGA
GCATAGCAAAGAAGTCATGGATGTTACCTTCCGCCCTGACGGTAAGGAGC
TTGCCGCCTGTACCACTTCAGGGGAAATCGTGCTGTGGGATCCGGAGAGA
GCCTCTATCACGGGCACTATAGACGGAGCCCGAGACTCTGCTCCTGGTCG
GCTTCGTGGTTCGCGGACTGCAGCACCTCAGAAGGGACGGTTTCAAACTT
TGAGCTACTCGGCAGATGGTAGATTCTTGTTCGCTGGAGCCGCCGCGAAG
AACGTCTGTGTCTACCATGTTGCTGAAGGGAGCAGGCCGACGCTAGTCAA
CAAAATTGCGGCGACACATAATCAAGACTTTGACGGTCTAAAACATAAGT
TGAATTCAAAGAATCTTACAATCAGTGGCCATGTGATGAATACTATGGAA
GACGATGACGAACAGGCTGAGGATTATGAAGAGGCACGGATTGCTAACGG
AAGGTCGCTTCCAGGGGCTGTGTCCGAGCAAAAACTGCGTCGAAAGAAGC
TCTTAAAGGCGGAAGTGATCTGCGTCAGGACGTGCGCCACGGGTCGTTTA
TGGGCTGCGGTAACTCCTGAAGGTGTTTTGGTTTACGGAGAAGATGAAGG
CGAAGAAGCAGATGAGCTCTTGTTTGACCCTACGAACTTGGAAATAGATA
TAACCCCTGAGGCAGCAAAAAAGGCCGCTGAAGAAGGTGATTACGTGACA
GGTCTCTCACTGGCTTTGAGATTGAACGAGAGAGCCGTATTGAACTTTGT
CGTCGAAAGGGTACCGGTGGCCTTGATTGACGAGGTTGCCAGGGCCGTCC
CAGTTTTGTACTTCAACCGCCTCGTTCATTTGTTCGCATGGCGTTTAGAT
AACACTCCTCACCTCGAGTTTAACTTGCGCTGGGCGAAAGAGTTGATTCT
TGCGCATGGGGGAAGCGTACATCGGAGCGTTCCGGACCCGTCAACCGTTA
ATACGGCATTGCGGTCGTTGAATCGCGCATGTCGAGCCCACTCGCGACGA
CTGGTCCCTGTGTGCGATAAGAACGAACATATGCTGGAGTACCTCCTCAC
ACTGAGCCGACAGACGGCCCAGTCATGA

Coding sequence (CDS) from alignment at NODE_18_length_79438_cov_4.566121:16121..17698-

>Gcaud2899.t1 ID=Gcaud2899.t1|Name=Gcaud2899.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1578bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:16121..17698- (Gracilaria caudata M_176_S67 male)
ATGGCCACAGCAGTTGCGTTCAGTCCCGACGGGCGCGCGGTTGCAACAGG
TTCGAAAGATGGACGGGTCAAGCTATGGGGAGTGGCAACTGGATTCTGCG
CGGCAACTTTCTCTGATCATTCGGCGTCAGTTACATCTCTTGCTTTTGCT
GCCAACGACGTAATTATCTCGTCTTCTCTAGATGGCACTGTCCGAGCGTT
TGATATTCGACGATATCGCAATTTCCGCGTCATGGTGGGTCCGCCACCAA
GACGGCAATTCGGATGCGTCGCAGCGGATGCGGCGGGTGAACTTGTTGCA
GCGGGCTGTGTAGACACATTTGAAGTCCTGGTATGGTCATTGCGTACCGG
TCAAGTACTAGAGATCCTGAATGGTCACAGAGGTCCTGTTAGCGGGGTTT
CATTTCGTCCAGCAAGAGGCACGCTCGCCAGTTCATCATGGGATCGCACC
GTGCGACTTTGGGATATGTACGAGCGGAAGGGAACATGTGAAGTCTTGGA
GCATAGCAAAGAAGTCATGGATGTTACCTTCCGCCCTGACGGTAAGGAGC
TTGCCGCCTGTACCACTTCAGGGGAAATCGTGCTGTGGGATCCGGAGAGA
GCCTCTATCACGGGCACTATAGACGGAGCCCGAGACTCTGCTCCTGGTCG
GCTTCGTGGTTCGCGGACTGCAGCACCTCAGAAGGGACGGTTTCAAACTT
TGAGCTACTCGGCAGATGGTAGATTCTTGTTCGCTGGAGCCGCCGCGAAG
AACGTCTGTGTCTACCATGTTGCTGAAGGGAGCAGGCCGACGCTAGTCAA
CAAAATTGCGGCGACACATAATCAAGACTTTGACGGTCTAAAACATAAGT
TGAATTCAAAGAATCTTACAATCAGTGGCCATGTGATGAATACTATGGAA
GACGATGACGAACAGGCTGAGGATTATGAAGAGGCACGGATTGCTAACGG
AAGGTCGCTTCCAGGGGCTGTGTCCGAGCAAAAACTGCGTCGAAAGAAGC
TCTTAAAGGCGGAAGTGATCTGCGTCAGGACGTGCGCCACGGGTCGTTTA
TGGGCTGCGGTAACTCCTGAAGGTGTTTTGGTTTACGGAGAAGATGAAGG
CGAAGAAGCAGATGAGCTCTTGTTTGACCCTACGAACTTGGAAATAGATA
TAACCCCTGAGGCAGCAAAAAAGGCCGCTGAAGAAGGTGATTACGTGACA
GGTCTCTCACTGGCTTTGAGATTGAACGAGAGAGCCGTATTGAACTTTGT
CGTCGAAAGGGTACCGGTGGCCTTGATTGACGAGGTTGCCAGGGCCGTCC
CAGTTTTGTACTTCAACCGCCTCGTTCATTTGTTCGCATGGCGTTTAGAT
AACACTCCTCACCTCGAGTTTAACTTGCGCTGGGCGAAAGAGTTGATTCT
TGCGCATGGGGGAAGCGTACATCGGAGCGTTCCGGACCCGTCAACCGTTA
ATACGGCATTGCGGTCGTTGAATCGCGCATGTCGAGCCCACTCGCGACGA
CTGGTCCCTGTGTGCGATAAGAACGAACATATGCTGGAGTACCTCCTCAC
ACTGAGCCGACAGACGGCCCAGTCATGA