Gcaud2898.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2898.t1
Unique NameGcaud2898.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length399
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_18_length_79438_cov_4.566121contigNODE_18_length_79438_cov_4.566121:14822..16018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706221.1
Preferred nameFEN1
PFAMsXPG_I,XPG_N
Max annot lvl2759|Eukaryota
KEGG koko:K04799
KEGG Pathwayko03030,ko03410,ko03450,map03030,map03410,map03450
GOsGO:0000003,GO:0000228,GO:0000278,GO:0000287,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000731,GO:0000734,GO:0000737,GO:0001302,GO:0001654,GO:0003006,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004521,GO:0004523,GO:0004527,GO:0004529,GO:0004536,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006284,GO:0006286,GO:0006302,GO:0006303,GO:0006308,GO:0006309,GO:0006310,GO:0006312,GO:0006401,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006921,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007063,GO:0007275,GO:0007423,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0007568,GO:0007569,GO:0007610,GO:0007611,GO:0007613,GO:0008150,GO:0008152,GO:0008219,GO:0008297,GO:0008309,GO:0008409,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009650,GO:0009987,GO:0010564,GO:0010638,GO:0012501,GO:0016043,GO:0016070,GO:0016311,GO:0016787,GO:0016788,GO:0016796,GO:0016888,GO:0016891,GO:0016893,GO:0016895,GO:0017108,GO:0018130,GO:0019438,GO:0019439,GO:0019725,GO:0022402,GO:0022411,GO:0022413,GO:0022414,GO:0022616,GO:0030145,GO:0030154,GO:0030262,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032501,GO:0032502,GO:0032505,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033260,GO:0033554,GO:0033567,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0034655,GO:0035312,GO:0035753,GO:0035822,GO:0035861,GO:0042592,GO:0043010,GO:0043137,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043570,GO:0043596,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045145,GO:0045165,GO:0045787,GO:0045876,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0048256,GO:0048513,GO:0048518,GO:0048522,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051128,GO:0051130,GO:0051276,GO:0051716,GO:0051726,GO:0051908,GO:0051983,GO:0051984,GO:0060041,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070914,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0090068,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0090734,GO:0097159,GO:0097194,GO:0098501,GO:0098502,GO:0104004,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902969,GO:1903047,GO:1903469,GO:1904162,GO:2001252
Evalue1.31e-121
EggNOG OGsCOG0258@1|root,KOG2519@2759|Eukaryota
Descriptionendonuclease activity
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2898Gcaud2898Gracilaria caudata M_176_S67 malegeneNODE_18_length_79438_cov_4.566121 14822..16018 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2898.t1.start1Gcaud2898.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_18_length_79438_cov_4.566121 14822..14824 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2898.t1.CDS1Gcaud2898.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_18_length_79438_cov_4.566121 14822..16018 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2898.t1.exon1Gcaud2898.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_18_length_79438_cov_4.566121 14822..16018 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2898.t1.stop1Gcaud2898.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_18_length_79438_cov_4.566121 16016..16018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2898.t1Gcaud2898.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_18_length_79438_cov_4.566121 14822..16018 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2898.t1 ID=Gcaud2898.t1|Name=Gcaud2898.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=399bp
MGIKGLSKLIGDNAPRAVNPQTVESLFGRKIAIDASMCIYQLLVAVRMGA
DNLTNNDGQVTSHLNGLFYRTIRLLELGVKPVFVFDGKPPEMKSGELTKR
AEAKKAAEEAAKKAREEGDLEAAEKFSRRINSLTPEIIQSCKRLVRAMGV
PVVEAPCEAEAQCAELVKNGDLYATASEDMDSLTFGTNRLIRHLWGGISS
TATKKGIKPNEFSLEIVLQDLDLPMSQFIDLCILCGCDYVDGIRGVGVVK
ALNLIKKHQDLQKIVDTLKKEKSYTVPDPYPVDTLRKMFTEPDITPAKDI
QLKWKKPNVEEIKKIMVEENQFDATKIDNGIKRLQASKQKTSQVRVDSFF
KRVTAPNEAERAAKRKAAAEANKKAKKAKTAKGSASSRKGSSKKAKSA*
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spliced messenger RNA

>Gcaud2898.t1 ID=Gcaud2898.t1|Name=Gcaud2898.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1197bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:14822..16018+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAATCAAGGGACTCTCCAAGCTAATTGGCGACAATGCACCAAGAGC
CGTTAATCCGCAAACTGTCGAATCTCTCTTCGGAAGGAAGATAGCCATAG
ACGCATCAATGTGCATCTACCAACTGCTAGTCGCCGTTCGAATGGGCGCT
GATAATTTGACCAATAATGATGGACAAGTCACTTCTCATCTCAATGGTCT
TTTCTATCGAACCATTCGGCTTCTTGAACTTGGCGTCAAACCAGTATTCG
TCTTCGACGGAAAGCCACCAGAAATGAAATCGGGTGAACTCACCAAGAGA
GCCGAGGCCAAGAAAGCCGCGGAGGAAGCTGCGAAGAAGGCTCGTGAAGA
AGGCGATTTAGAAGCGGCTGAGAAGTTTTCTCGCCGTATCAACTCACTGA
CACCCGAAATTATCCAGTCTTGTAAACGACTTGTGCGTGCTATGGGCGTA
CCAGTCGTGGAGGCGCCTTGTGAAGCAGAGGCCCAATGCGCTGAGCTTGT
CAAAAACGGCGATCTGTATGCCACCGCTTCCGAAGATATGGATTCTCTTA
CCTTCGGCACGAATCGACTTATTCGTCATTTGTGGGGTGGCATTTCCTCT
ACTGCCACCAAGAAAGGTATCAAGCCTAACGAATTCTCTTTGGAAATTGT
CTTGCAAGATTTGGATCTGCCCATGTCTCAATTCATTGATCTTTGTATTC
TCTGCGGTTGTGATTATGTTGACGGTATAAGGGGGGTGGGAGTAGTAAAA
GCGCTCAACCTCATTAAGAAGCACCAGGACTTACAGAAAATTGTTGACAC
TCTGAAGAAGGAGAAGTCCTACACCGTTCCAGATCCGTATCCCGTCGACA
CCCTTCGAAAGATGTTCACCGAGCCAGACATCACACCAGCGAAGGATATT
CAGCTAAAGTGGAAAAAGCCAAATGTGGAAGAGATCAAGAAGATCATGGT
CGAGGAGAATCAGTTTGATGCCACCAAGATCGACAATGGTATCAAGCGAC
TACAAGCCTCAAAACAAAAAACAAGTCAGGTTCGAGTCGATTCTTTTTTC
AAACGCGTCACTGCCCCAAATGAAGCCGAGAGAGCTGCcaaacggaaagc
agcggcagaggcaaacaaaaaggcaaagaaggcaaagACTGCGAAAGGAT
CTGCGTCGTCTCGTAAGGGCAGCAGTAAGAAAGCAAAATCGGCTTAG
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protein sequence of Gcaud2898.t1

>Gcaud2898.t1 ID=Gcaud2898.t1|Name=Gcaud2898.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=399bp
MGIKGLSKLIGDNAPRAVNPQTVESLFGRKIAIDASMCIYQLLVAVRMGA
DNLTNNDGQVTSHLNGLFYRTIRLLELGVKPVFVFDGKPPEMKSGELTKR
AEAKKAAEEAAKKAREEGDLEAAEKFSRRINSLTPEIIQSCKRLVRAMGV
PVVEAPCEAEAQCAELVKNGDLYATASEDMDSLTFGTNRLIRHLWGGISS
TATKKGIKPNEFSLEIVLQDLDLPMSQFIDLCILCGCDYVDGIRGVGVVK
ALNLIKKHQDLQKIVDTLKKEKSYTVPDPYPVDTLRKMFTEPDITPAKDI
QLKWKKPNVEEIKKIMVEENQFDATKIDNGIKRLQASKQKTSQVRVDSFF
KRVTAPNEAERAAKRKAAAEANKKAKKAKTAKGSASSRKGSSKKAKSA*
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mRNA from alignment at NODE_18_length_79438_cov_4.566121:14822..16018+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2898.t1 ID=Gcaud2898.t1|Name=Gcaud2898.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1197bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:14822..16018+ (Gracilaria caudata M_176_S67 male)
ATGGGAATCAAGGGACTCTCCAAGCTAATTGGCGACAATGCACCAAGAGC
CGTTAATCCGCAAACTGTCGAATCTCTCTTCGGAAGGAAGATAGCCATAG
ACGCATCAATGTGCATCTACCAACTGCTAGTCGCCGTTCGAATGGGCGCT
GATAATTTGACCAATAATGATGGACAAGTCACTTCTCATCTCAATGGTCT
TTTCTATCGAACCATTCGGCTTCTTGAACTTGGCGTCAAACCAGTATTCG
TCTTCGACGGAAAGCCACCAGAAATGAAATCGGGTGAACTCACCAAGAGA
GCCGAGGCCAAGAAAGCCGCGGAGGAAGCTGCGAAGAAGGCTCGTGAAGA
AGGCGATTTAGAAGCGGCTGAGAAGTTTTCTCGCCGTATCAACTCACTGA
CACCCGAAATTATCCAGTCTTGTAAACGACTTGTGCGTGCTATGGGCGTA
CCAGTCGTGGAGGCGCCTTGTGAAGCAGAGGCCCAATGCGCTGAGCTTGT
CAAAAACGGCGATCTGTATGCCACCGCTTCCGAAGATATGGATTCTCTTA
CCTTCGGCACGAATCGACTTATTCGTCATTTGTGGGGTGGCATTTCCTCT
ACTGCCACCAAGAAAGGTATCAAGCCTAACGAATTCTCTTTGGAAATTGT
CTTGCAAGATTTGGATCTGCCCATGTCTCAATTCATTGATCTTTGTATTC
TCTGCGGTTGTGATTATGTTGACGGTATAAGGGGGGTGGGAGTAGTAAAA
GCGCTCAACCTCATTAAGAAGCACCAGGACTTACAGAAAATTGTTGACAC
TCTGAAGAAGGAGAAGTCCTACACCGTTCCAGATCCGTATCCCGTCGACA
CCCTTCGAAAGATGTTCACCGAGCCAGACATCACACCAGCGAAGGATATT
CAGCTAAAGTGGAAAAAGCCAAATGTGGAAGAGATCAAGAAGATCATGGT
CGAGGAGAATCAGTTTGATGCCACCAAGATCGACAATGGTATCAAGCGAC
TACAAGCCTCAAAACAAAAAACAAGTCAGGTTCGAGTCGATTCTTTTTTC
AAACGCGTCACTGCCCCAAATGAAGCCGAGAGAGCTGCcaaacggaaagc
agcggcagaggcaaacaaaaaggcaaagaaggcaaagACTGCGAAAGGAT
CTGCGTCGTCTCGTAAGGGCAGCAGTAAGAAAGCAAAATCGGCTTAG
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Coding sequence (CDS) from alignment at NODE_18_length_79438_cov_4.566121:14822..16018+

>Gcaud2898.t1 ID=Gcaud2898.t1|Name=Gcaud2898.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1197bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:14822..16018+ (Gracilaria caudata M_176_S67 male)
ATGGGAATCAAGGGACTCTCCAAGCTAATTGGCGACAATGCACCAAGAGC
CGTTAATCCGCAAACTGTCGAATCTCTCTTCGGAAGGAAGATAGCCATAG
ACGCATCAATGTGCATCTACCAACTGCTAGTCGCCGTTCGAATGGGCGCT
GATAATTTGACCAATAATGATGGACAAGTCACTTCTCATCTCAATGGTCT
TTTCTATCGAACCATTCGGCTTCTTGAACTTGGCGTCAAACCAGTATTCG
TCTTCGACGGAAAGCCACCAGAAATGAAATCGGGTGAACTCACCAAGAGA
GCCGAGGCCAAGAAAGCCGCGGAGGAAGCTGCGAAGAAGGCTCGTGAAGA
AGGCGATTTAGAAGCGGCTGAGAAGTTTTCTCGCCGTATCAACTCACTGA
CACCCGAAATTATCCAGTCTTGTAAACGACTTGTGCGTGCTATGGGCGTA
CCAGTCGTGGAGGCGCCTTGTGAAGCAGAGGCCCAATGCGCTGAGCTTGT
CAAAAACGGCGATCTGTATGCCACCGCTTCCGAAGATATGGATTCTCTTA
CCTTCGGCACGAATCGACTTATTCGTCATTTGTGGGGTGGCATTTCCTCT
ACTGCCACCAAGAAAGGTATCAAGCCTAACGAATTCTCTTTGGAAATTGT
CTTGCAAGATTTGGATCTGCCCATGTCTCAATTCATTGATCTTTGTATTC
TCTGCGGTTGTGATTATGTTGACGGTATAAGGGGGGTGGGAGTAGTAAAA
GCGCTCAACCTCATTAAGAAGCACCAGGACTTACAGAAAATTGTTGACAC
TCTGAAGAAGGAGAAGTCCTACACCGTTCCAGATCCGTATCCCGTCGACA
CCCTTCGAAAGATGTTCACCGAGCCAGACATCACACCAGCGAAGGATATT
CAGCTAAAGTGGAAAAAGCCAAATGTGGAAGAGATCAAGAAGATCATGGT
CGAGGAGAATCAGTTTGATGCCACCAAGATCGACAATGGTATCAAGCGAC
TACAAGCCTCAAAACAAAAAACAAGTCAGGTTCGAGTCGATTCTTTTTTC
AAACGCGTCACTGCCCCAAATGAAGCCGAGAGAGCTGCcaaacggaaagc
agcggcagaggcaaacaaaaaggcaaagaaggcaaagACTGCGAAAGGAT
CTGCGTCGTCTCGTAAGGGCAGCAGTAAGAAAGCAAAATCGGCTTAG
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