Gcaud2895.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2895.t1
Unique Name	Gcaud2895.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	338

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_18_length_79438_cov_4.566121	contig	NODE_18_length_79438_cov_4.566121:1023..2036 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1502851.FG93_03332
Preferred name	crtF
PFAMs	Dimerisation2,Methyltransf_2
Max annot lvl	28211\|Alphaproteobacteria
KEGG rclass	RC00003,RC02082
KEGG ko	ko:K09846
KEGG Reaction	R07521,R07524,R07527,R07529,R07533,R07535
KEGG Pathway	ko00906,ko01100,map00906,map01100
Evalue	9.68e-59
EggNOG OGs	COG2813@1\|root,COG2813@2\|Bacteria,1QWWU@1224\|Proteobacteria,2TX6V@28211\|Alphaproteobacteria,3K6SJ@41294\|Bradyrhizobiaceae
EC	2.1.1.210
Description	O-methyltransferase
COG category	J
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2895	Gcaud2895	Gracilaria caudata M_176_S67 male	gene	NODE_18_length_79438_cov_4.566121 1023..2036 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2895.t1.start1	Gcaud2895.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_18_length_79438_cov_4.566121 1023..1025 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2895.t1.CDS1	Gcaud2895.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_18_length_79438_cov_4.566121 1023..2036 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2895.t1.exon1	Gcaud2895.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_18_length_79438_cov_4.566121 1023..2036 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2895.t1.stop1	Gcaud2895.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_18_length_79438_cov_4.566121 2034..2036 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2895.t1	Gcaud2895.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_18_length_79438_cov_4.566121 1023..2036 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_18_length_79438_cov_4.566121:1023..2036+
coding sequence from alignment at NODE_18_length_79438_cov_4.566121:1023..2036+

mRNA sequence

>Gcaud2895.t1 ID=Gcaud2895.t1|Name=Gcaud2895.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=338bp
MDEHHIARPDISPFYKLAFHFFPSRLFLTAVELDLFSHISTPQTALHIQN
ALQLRASPTVVTDFLDALVALDVIHRDASGAHALYSNTPASRFYLSSSSA
GSHAPGLVYVAKVLYPLWNNLTSALKDGELQPQVMDDLHDPSALAGFVNL
MQLMREVHVTFAQRFSFKHVSTMLDIGGADAQLCCEVAKRHSSLKLISLD
TAQMTPHAKRHISQKALDARVHTLEGDMWQLDFPQCDLITTSNVLHMLNE
CNKKRLIQKAYNALNEGGAMVVMGWIIDDDRRHNLSAMLMSLLMPMITDG
GFDHSARQFDQWATEIGFARTEFMQLITPVHAVIAYK*

spliced messenger RNA

>Gcaud2895.t1 ID=Gcaud2895.t1|Name=Gcaud2895.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1014bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:1023..2036+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGAACATCACATCGCCCGTCCCGACATATCTCCCTTCTACAAGCT
CGCCTTCCACTTCTTCCCGTCGCGACTCTTTCTCACCGCCGTCGAACTCG
ATCTCTTCTCGCACATCTCCACCCCGCAAACCGCCCTTCACATCCAGAAC
GCGCTGCAACTGCGCGCCTCCCCCACCGTCGTCACCGACTTTCTGGACGC
GCTCGTCGCGCTCGACGTCATCCATCGCGACGCTTCCGGCGCGCACGCGC
TCTACTCCAACACGCCCGCCTCGCGCTTCTACCTCAGCTCCTCCAGCGCG
GGCTCCCACGCGCCGGGGCTCGTTTACGTCGCCAAAGTTCTGTACCCGCT
GTGGAACAATCTCACGTCAGCCTTAAAAGATGGCGAGTTGCAACCACAGG
TGATGGATGACCTTCACGACCCGAGCGCTCTTGCTGGCTTTGTCAACCTC
ATGCAACTCATGCGTGAGGTGCATGTCACATTTGCGCAACGTTTTAGCTT
TAAACATGTTTCCACCATGCTCGATATCGGTGGGGCGGATGCGCAGTTAT
GTTGTGAGGTTGCCAAACGTCATTCCTCGCTCAAACTCATCTCGCTTGAC
ACCGCACAAATGACCCCGCACGCCAAACGTCACATATCGCAAAAAGCGCT
CGACGCGCGCGTGCACACATTGGAGGGAGATATGTGGCAACTCGATTTCC
CACAATGCGACTTGATCACCACGTCAAACGTGCTTCACATGTTAAACGAA
TGCAACAAGAAACGACTCATCCAAAAGGCGTACAATGCGCTTAATGAGGG
CGGCGCTATGGTGGTCATGGGATGGATCATAGATGATGATCGTCGTCATA
ATCTGTCCGCAATGCTCATGTCGTTGCTCATGCCCATGATTACGGACGGC
GGTTTCGATCATTCGGCGCGCCAATTCGATCAGTGGGCCACTGAAATTGG
CTTTGCTCGCACCGAGTTTATGCAGCTCATCACGCCGGTGCATGCCGTCA
TTGCGTACAAATGA

protein sequence of Gcaud2895.t1

>Gcaud2895.t1 ID=Gcaud2895.t1|Name=Gcaud2895.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=338bp
MDEHHIARPDISPFYKLAFHFFPSRLFLTAVELDLFSHISTPQTALHIQN
ALQLRASPTVVTDFLDALVALDVIHRDASGAHALYSNTPASRFYLSSSSA
GSHAPGLVYVAKVLYPLWNNLTSALKDGELQPQVMDDLHDPSALAGFVNL
MQLMREVHVTFAQRFSFKHVSTMLDIGGADAQLCCEVAKRHSSLKLISLD
TAQMTPHAKRHISQKALDARVHTLEGDMWQLDFPQCDLITTSNVLHMLNE
CNKKRLIQKAYNALNEGGAMVVMGWIIDDDRRHNLSAMLMSLLMPMITDG
GFDHSARQFDQWATEIGFARTEFMQLITPVHAVIAYK*

mRNA from alignment at NODE_18_length_79438_cov_4.566121:1023..2036+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2895.t1 ID=Gcaud2895.t1|Name=Gcaud2895.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1014bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:1023..2036+ (Gracilaria caudata M_176_S67 male)
ATGGATGAACATCACATCGCCCGTCCCGACATATCTCCCTTCTACAAGCT
CGCCTTCCACTTCTTCCCGTCGCGACTCTTTCTCACCGCCGTCGAACTCG
ATCTCTTCTCGCACATCTCCACCCCGCAAACCGCCCTTCACATCCAGAAC
GCGCTGCAACTGCGCGCCTCCCCCACCGTCGTCACCGACTTTCTGGACGC
GCTCGTCGCGCTCGACGTCATCCATCGCGACGCTTCCGGCGCGCACGCGC
TCTACTCCAACACGCCCGCCTCGCGCTTCTACCTCAGCTCCTCCAGCGCG
GGCTCCCACGCGCCGGGGCTCGTTTACGTCGCCAAAGTTCTGTACCCGCT
GTGGAACAATCTCACGTCAGCCTTAAAAGATGGCGAGTTGCAACCACAGG
TGATGGATGACCTTCACGACCCGAGCGCTCTTGCTGGCTTTGTCAACCTC
ATGCAACTCATGCGTGAGGTGCATGTCACATTTGCGCAACGTTTTAGCTT
TAAACATGTTTCCACCATGCTCGATATCGGTGGGGCGGATGCGCAGTTAT
GTTGTGAGGTTGCCAAACGTCATTCCTCGCTCAAACTCATCTCGCTTGAC
ACCGCACAAATGACCCCGCACGCCAAACGTCACATATCGCAAAAAGCGCT
CGACGCGCGCGTGCACACATTGGAGGGAGATATGTGGCAACTCGATTTCC
CACAATGCGACTTGATCACCACGTCAAACGTGCTTCACATGTTAAACGAA
TGCAACAAGAAACGACTCATCCAAAAGGCGTACAATGCGCTTAATGAGGG
CGGCGCTATGGTGGTCATGGGATGGATCATAGATGATGATCGTCGTCATA
ATCTGTCCGCAATGCTCATGTCGTTGCTCATGCCCATGATTACGGACGGC
GGTTTCGATCATTCGGCGCGCCAATTCGATCAGTGGGCCACTGAAATTGG
CTTTGCTCGCACCGAGTTTATGCAGCTCATCACGCCGGTGCATGCCGTCA
TTGCGTACAAATGA

Coding sequence (CDS) from alignment at NODE_18_length_79438_cov_4.566121:1023..2036+

>Gcaud2895.t1 ID=Gcaud2895.t1|Name=Gcaud2895.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1014bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:1023..2036+ (Gracilaria caudata M_176_S67 male)
ATGGATGAACATCACATCGCCCGTCCCGACATATCTCCCTTCTACAAGCT
CGCCTTCCACTTCTTCCCGTCGCGACTCTTTCTCACCGCCGTCGAACTCG
ATCTCTTCTCGCACATCTCCACCCCGCAAACCGCCCTTCACATCCAGAAC
GCGCTGCAACTGCGCGCCTCCCCCACCGTCGTCACCGACTTTCTGGACGC
GCTCGTCGCGCTCGACGTCATCCATCGCGACGCTTCCGGCGCGCACGCGC
TCTACTCCAACACGCCCGCCTCGCGCTTCTACCTCAGCTCCTCCAGCGCG
GGCTCCCACGCGCCGGGGCTCGTTTACGTCGCCAAAGTTCTGTACCCGCT
GTGGAACAATCTCACGTCAGCCTTAAAAGATGGCGAGTTGCAACCACAGG
TGATGGATGACCTTCACGACCCGAGCGCTCTTGCTGGCTTTGTCAACCTC
ATGCAACTCATGCGTGAGGTGCATGTCACATTTGCGCAACGTTTTAGCTT
TAAACATGTTTCCACCATGCTCGATATCGGTGGGGCGGATGCGCAGTTAT
GTTGTGAGGTTGCCAAACGTCATTCCTCGCTCAAACTCATCTCGCTTGAC
ACCGCACAAATGACCCCGCACGCCAAACGTCACATATCGCAAAAAGCGCT
CGACGCGCGCGTGCACACATTGGAGGGAGATATGTGGCAACTCGATTTCC
CACAATGCGACTTGATCACCACGTCAAACGTGCTTCACATGTTAAACGAA
TGCAACAAGAAACGACTCATCCAAAAGGCGTACAATGCGCTTAATGAGGG
CGGCGCTATGGTGGTCATGGGATGGATCATAGATGATGATCGTCGTCATA
ATCTGTCCGCAATGCTCATGTCGTTGCTCATGCCCATGATTACGGACGGC
GGTTTCGATCATTCGGCGCGCCAATTCGATCAGTGGGCCACTGAAATTGG
CTTTGCTCGCACCGAGTTTATGCAGCTCATCACGCCGGTGCATGCCGTCA
TTGCGTACAAATGA