Gcaud2875.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2875.t1
Unique Name	Gcaud2875.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	504

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_931_length_16040_cov_4.143144	contig	NODE_931_length_16040_cov_4.143144:12446..13957 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1121921.KB898707_gene779
PFAMs	Big_2,UnbV_ASPIC,VCBS
Max annot lvl	1236\|Gammaproteobacteria
Evalue	1.73e-51
EggNOG OGs	COG2931@1\|root,COG5492@1\|root,COG2931@2\|Bacteria,COG5492@2\|Bacteria,1R7ZV@1224\|Proteobacteria,1RPUG@1236\|Gammaproteobacteria
Description	ASPIC and UnbV
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2875	Gcaud2875	Gracilaria caudata M_176_S67 male	gene	NODE_931_length_16040_cov_4.143144 12446..13957 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2875.t1.start1	Gcaud2875.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_931_length_16040_cov_4.143144 12446..12448 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2875.t1.CDS1	Gcaud2875.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_931_length_16040_cov_4.143144 12446..13957 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2875.t1.exon1	Gcaud2875.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_931_length_16040_cov_4.143144 12446..13957 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2875.t1.stop1	Gcaud2875.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_931_length_16040_cov_4.143144 13955..13957 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2875.t1	Gcaud2875.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_931_length_16040_cov_4.143144 12446..13957 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_931_length_16040_cov_4.143144:12446..13957+
coding sequence from alignment at NODE_931_length_16040_cov_4.143144:12446..13957+

mRNA sequence

>Gcaud2875.t1 ID=Gcaud2875.t1|Name=Gcaud2875.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=504bp
MTGFNLLLTTLVLLFAAAVAQTPSFRDVTVAAGIDLRSGKVKKYGSPSVV
DLDRDGLPDLLFCHHDSTFTEMYYNLGNGKFGKTNWGIFHDSHGFSPFPV
SPWHKTMRFTLSVGGNYGLDPANPLMFEVNPYDRSVRQVTNDAGITERGG
RGRTAVYLDLSMGAHPYWPDVIYTNAWAIEGTHQFAYENVGQMKFALRTL
QGGFEWTRNELAAVTDIDNDGVMEVLSYSMFTVWKLVGPFNMVDISSTVL
PPGMSRQGVAAVAEIDFDGDGDFDLYLARDRYASWMPSGAYHDILLENRD
GKYVDVSERAGIPRGSKSRGVTAGDFNNDGWIDLHVSQYQGTDFLLLNNG
DGTFTRKDWLTAHGPDTRGDMTVGVDYDMDGKLDLIMSEGDHSDVSIGGY
FRVYKNELSGGGNYLHVRVGNPTDRSCTPLNAVVFVKTGNLTMMRRVGSP
GTAVSVSYLETLHFGLGSRTTVDSVTVRYTNGVVEEVRNVDHGQTVFVGV
EGA*

spliced messenger RNA

>Gcaud2875.t1 ID=Gcaud2875.t1|Name=Gcaud2875.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at NODE_931_length_16040_cov_4.143144:12446..13957+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGGGTTTAACTTGCTTTTAACAACTTTGGTGCTTCTGTTCGCGGC
GGCTGTGGCGCAGACCCCGTCTTTTCGAGATGTGACCGTCGCGGCTGGCA
TTGATCTGCGGTCCGGCAAAGTGAAGAAATACGGCTCCCCATCTGTTGTG
GACCTCGATCGCGACGGACTTCCGGACCTTTTGTTCTGTCACCACGATTC
CACCTTCACTGAGATGTACTACAACCTTGGCAACGGCAAATTCGGGAAGA
CGAACTGGGGCATTTTCCACGACTCGCATGGCTTCTCTCCGTTTCCGGTG
TCTCCCTGGCACAAGACGATGAGATTCACGCTTTCCGTGGGCGGGAATTA
CGGTTTGGACCCGGCCAATCCTCTCATGTTTGAGGTCAATCCGTACGATC
GATCCGTCAGACAGGTGACCAATGATGCTGGTATCACAGAAAGGGGCGGA
AGGGGAAGAACAGCTGTGTATCTCGACCTGTCAATGGGCGCCCATCCGTA
CTGGCCAGACGTGATTTATACCAACGCGTGGGCAATTGAGGGCACGCATC
AGTTTGCGTACGAGAATGTTGGACAAATGAAGTTCGCTCTCAGAACGCTT
CAAGGTGGATTTGAATGGACGAGGAATGAGCTGGCTGCTGTCACAGATAT
TGATAATGATGGCGTCATGGAGGTTCTGAGCTACTCTATGTTCACCGTGT
GGAAGCTCGTGGGACCGTTCAACATGGTTGATATCTCTAGTACAGTACTG
CCGCCGGGCATGTCCAGACAGGGAGTGGCGGCTGTCGCGGAGATTGACTT
TGATGGCGATGGTGACTTTGACCTTTATCTGGCGCGCGATAGGTATGCAA
GTTGGATGCCTAGTGGTGCGTACCATGACATCTTACTTGAGAACCGCGAT
GGAAAATATGTCGACGTGAGCGAACGGGCTGGCATTCCAAGAGGTTCCAA
GTCGCGGGGCGTCACCGCTGGCGACTTTAACAATGATGGCTGGATCGATC
TTCATGTCTCGCAGTATCAGGGCACTGACTTTTTGCTGCTGAACAATGGA
GACGGAACATTTACCAGAAAAGACTGGCTCACCGCACACGGGCCTGATAC
AAGGGGTGACATGACGGTTGGTgttgactacgacatggacggaaagcttg
acctcatcatgagtgaaggcgatcaTAGCGACGTTTCGATAGGAGGCTAC
TTCCGGGTGTACAAGAACGAGTTGAGTGGTGGCGGAAATTATCTACATGT
GCGTGTTGGAAATCCGACCGATAGGAGCTGCACTCCGTTGAATGCAGTGG
TCTTTGTCAAGACAGGAAATCTCACCATGATGCGACGTGTGGGATCTCCC
GGAACTGCGGTCTCTGTCTCGTACCTGGAGACATTGCACTTTGGATTGGG
TTCTAGAACGACAGTGGATTCAGTGACAGTCAGGTATACTAACGGTGTTG
TTGAGGAGGTTAGAAACGTAGATCACGGTCAGACAGTTTTCGTTGGCGTC
GAAGGCGCGTAG

protein sequence of Gcaud2875.t1

>Gcaud2875.t1 ID=Gcaud2875.t1|Name=Gcaud2875.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=504bp
MTGFNLLLTTLVLLFAAAVAQTPSFRDVTVAAGIDLRSGKVKKYGSPSVV
DLDRDGLPDLLFCHHDSTFTEMYYNLGNGKFGKTNWGIFHDSHGFSPFPV
SPWHKTMRFTLSVGGNYGLDPANPLMFEVNPYDRSVRQVTNDAGITERGG
RGRTAVYLDLSMGAHPYWPDVIYTNAWAIEGTHQFAYENVGQMKFALRTL
QGGFEWTRNELAAVTDIDNDGVMEVLSYSMFTVWKLVGPFNMVDISSTVL
PPGMSRQGVAAVAEIDFDGDGDFDLYLARDRYASWMPSGAYHDILLENRD
GKYVDVSERAGIPRGSKSRGVTAGDFNNDGWIDLHVSQYQGTDFLLLNNG
DGTFTRKDWLTAHGPDTRGDMTVGVDYDMDGKLDLIMSEGDHSDVSIGGY
FRVYKNELSGGGNYLHVRVGNPTDRSCTPLNAVVFVKTGNLTMMRRVGSP
GTAVSVSYLETLHFGLGSRTTVDSVTVRYTNGVVEEVRNVDHGQTVFVGV
EGA*

mRNA from alignment at NODE_931_length_16040_cov_4.143144:12446..13957+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2875.t1 ID=Gcaud2875.t1|Name=Gcaud2875.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at NODE_931_length_16040_cov_4.143144:12446..13957+ (Gracilaria caudata M_176_S67 male)
ATGACTGGGTTTAACTTGCTTTTAACAACTTTGGTGCTTCTGTTCGCGGC
GGCTGTGGCGCAGACCCCGTCTTTTCGAGATGTGACCGTCGCGGCTGGCA
TTGATCTGCGGTCCGGCAAAGTGAAGAAATACGGCTCCCCATCTGTTGTG
GACCTCGATCGCGACGGACTTCCGGACCTTTTGTTCTGTCACCACGATTC
CACCTTCACTGAGATGTACTACAACCTTGGCAACGGCAAATTCGGGAAGA
CGAACTGGGGCATTTTCCACGACTCGCATGGCTTCTCTCCGTTTCCGGTG
TCTCCCTGGCACAAGACGATGAGATTCACGCTTTCCGTGGGCGGGAATTA
CGGTTTGGACCCGGCCAATCCTCTCATGTTTGAGGTCAATCCGTACGATC
GATCCGTCAGACAGGTGACCAATGATGCTGGTATCACAGAAAGGGGCGGA
AGGGGAAGAACAGCTGTGTATCTCGACCTGTCAATGGGCGCCCATCCGTA
CTGGCCAGACGTGATTTATACCAACGCGTGGGCAATTGAGGGCACGCATC
AGTTTGCGTACGAGAATGTTGGACAAATGAAGTTCGCTCTCAGAACGCTT
CAAGGTGGATTTGAATGGACGAGGAATGAGCTGGCTGCTGTCACAGATAT
TGATAATGATGGCGTCATGGAGGTTCTGAGCTACTCTATGTTCACCGTGT
GGAAGCTCGTGGGACCGTTCAACATGGTTGATATCTCTAGTACAGTACTG
CCGCCGGGCATGTCCAGACAGGGAGTGGCGGCTGTCGCGGAGATTGACTT
TGATGGCGATGGTGACTTTGACCTTTATCTGGCGCGCGATAGGTATGCAA
GTTGGATGCCTAGTGGTGCGTACCATGACATCTTACTTGAGAACCGCGAT
GGAAAATATGTCGACGTGAGCGAACGGGCTGGCATTCCAAGAGGTTCCAA
GTCGCGGGGCGTCACCGCTGGCGACTTTAACAATGATGGCTGGATCGATC
TTCATGTCTCGCAGTATCAGGGCACTGACTTTTTGCTGCTGAACAATGGA
GACGGAACATTTACCAGAAAAGACTGGCTCACCGCACACGGGCCTGATAC
AAGGGGTGACATGACGGTTGGTgttgactacgacatggacggaaagcttg
acctcatcatgagtgaaggcgatcaTAGCGACGTTTCGATAGGAGGCTAC
TTCCGGGTGTACAAGAACGAGTTGAGTGGTGGCGGAAATTATCTACATGT
GCGTGTTGGAAATCCGACCGATAGGAGCTGCACTCCGTTGAATGCAGTGG
TCTTTGTCAAGACAGGAAATCTCACCATGATGCGACGTGTGGGATCTCCC
GGAACTGCGGTCTCTGTCTCGTACCTGGAGACATTGCACTTTGGATTGGG
TTCTAGAACGACAGTGGATTCAGTGACAGTCAGGTATACTAACGGTGTTG
TTGAGGAGGTTAGAAACGTAGATCACGGTCAGACAGTTTTCGTTGGCGTC
GAAGGCGCGTAG

Coding sequence (CDS) from alignment at NODE_931_length_16040_cov_4.143144:12446..13957+

>Gcaud2875.t1 ID=Gcaud2875.t1|Name=Gcaud2875.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1512bp|location=Sequence derived from alignment at NODE_931_length_16040_cov_4.143144:12446..13957+ (Gracilaria caudata M_176_S67 male)
ATGACTGGGTTTAACTTGCTTTTAACAACTTTGGTGCTTCTGTTCGCGGC
GGCTGTGGCGCAGACCCCGTCTTTTCGAGATGTGACCGTCGCGGCTGGCA
TTGATCTGCGGTCCGGCAAAGTGAAGAAATACGGCTCCCCATCTGTTGTG
GACCTCGATCGCGACGGACTTCCGGACCTTTTGTTCTGTCACCACGATTC
CACCTTCACTGAGATGTACTACAACCTTGGCAACGGCAAATTCGGGAAGA
CGAACTGGGGCATTTTCCACGACTCGCATGGCTTCTCTCCGTTTCCGGTG
TCTCCCTGGCACAAGACGATGAGATTCACGCTTTCCGTGGGCGGGAATTA
CGGTTTGGACCCGGCCAATCCTCTCATGTTTGAGGTCAATCCGTACGATC
GATCCGTCAGACAGGTGACCAATGATGCTGGTATCACAGAAAGGGGCGGA
AGGGGAAGAACAGCTGTGTATCTCGACCTGTCAATGGGCGCCCATCCGTA
CTGGCCAGACGTGATTTATACCAACGCGTGGGCAATTGAGGGCACGCATC
AGTTTGCGTACGAGAATGTTGGACAAATGAAGTTCGCTCTCAGAACGCTT
CAAGGTGGATTTGAATGGACGAGGAATGAGCTGGCTGCTGTCACAGATAT
TGATAATGATGGCGTCATGGAGGTTCTGAGCTACTCTATGTTCACCGTGT
GGAAGCTCGTGGGACCGTTCAACATGGTTGATATCTCTAGTACAGTACTG
CCGCCGGGCATGTCCAGACAGGGAGTGGCGGCTGTCGCGGAGATTGACTT
TGATGGCGATGGTGACTTTGACCTTTATCTGGCGCGCGATAGGTATGCAA
GTTGGATGCCTAGTGGTGCGTACCATGACATCTTACTTGAGAACCGCGAT
GGAAAATATGTCGACGTGAGCGAACGGGCTGGCATTCCAAGAGGTTCCAA
GTCGCGGGGCGTCACCGCTGGCGACTTTAACAATGATGGCTGGATCGATC
TTCATGTCTCGCAGTATCAGGGCACTGACTTTTTGCTGCTGAACAATGGA
GACGGAACATTTACCAGAAAAGACTGGCTCACCGCACACGGGCCTGATAC
AAGGGGTGACATGACGGTTGGTgttgactacgacatggacggaaagcttg
acctcatcatgagtgaaggcgatcaTAGCGACGTTTCGATAGGAGGCTAC
TTCCGGGTGTACAAGAACGAGTTGAGTGGTGGCGGAAATTATCTACATGT
GCGTGTTGGAAATCCGACCGATAGGAGCTGCACTCCGTTGAATGCAGTGG
TCTTTGTCAAGACAGGAAATCTCACCATGATGCGACGTGTGGGATCTCCC
GGAACTGCGGTCTCTGTCTCGTACCTGGAGACATTGCACTTTGGATTGGG
TTCTAGAACGACAGTGGATTCAGTGACAGTCAGGTATACTAACGGTGTTG
TTGAGGAGGTTAGAAACGTAGATCACGGTCAGACAGTTTTCGTTGGCGTC
GAAGGCGCGTAG