Gcaud2873.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2873.t1
Unique Name	Gcaud2873.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	501

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_931_length_16040_cov_4.143144	contig	NODE_931_length_16040_cov_4.143144:4496..5998 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1142394.PSMK_25450
PFAMs	UnbV_ASPIC,VCBS
Max annot lvl	2\|Bacteria
Evalue	8.64e-49
EggNOG OGs	COG2931@1\|root,COG2931@2\|Bacteria
Description	calcium- and calmodulin-responsive adenylate cyclase activity
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2873	Gcaud2873	Gracilaria caudata M_176_S67 male	gene	NODE_931_length_16040_cov_4.143144 4496..5998 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2873.t1.stop1	Gcaud2873.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_931_length_16040_cov_4.143144 4496..4498 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2873.t1.CDS1	Gcaud2873.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_931_length_16040_cov_4.143144 4496..5998 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2873.t1.exon1	Gcaud2873.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_931_length_16040_cov_4.143144 4496..5998 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2873.t1.start1	Gcaud2873.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_931_length_16040_cov_4.143144 5996..5998 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2873.t1	Gcaud2873.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_931_length_16040_cov_4.143144 4496..5998 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_931_length_16040_cov_4.143144:4496..5998-
coding sequence from alignment at NODE_931_length_16040_cov_4.143144:4496..5998-

mRNA sequence

>Gcaud2873.t1 ID=Gcaud2873.t1|Name=Gcaud2873.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=501bp
MAVHALLLCSLLLFSAAIAANPSFRDVTAQSGIDRSSGKIKKYGGPAVVD
LDRDGLPDLLFCHHDSARTEMYFNNGNGTFVKQKWGIFHDSHGFAAFPIS
PWSKKMRFTLSVGGNFGMNPNNPLMFEVNPYDRSVREVTEEAGITAIGGR
GRSAVYMDLAMGAHPWWPDVIYTNAWAIEGIHQFAYENTGDQKFALRELK
GGFEWTRNPIAVVTDMENDGIMEVLSIYFFTVWKLTAPFNMVDVSDKVLP
PNMAREGVVSVAEIDYDGDGDFDLYLSRDRIGFWMPDTVYHDILLENRDG
RYVDVSVKAGIPRGTPSRGVTTGDFNNDGLMDLHVSQFTGSDIVLLNNGD
GTFRRVNGLTTHAADTRGDMSAAVDYDMDGRVDLIMSEGDQDEDPIGGTY
RVYKNVMSREDNYIHVRVGNPSDRSCTPLNAVVIVKAGDLSMVRRVGSPG
TYVSPSYMETLHFGLGARSVVDSISVRYTNGKVERVENVTPRRTVLLGVL
*

spliced messenger RNA

>Gcaud2873.t1 ID=Gcaud2873.t1|Name=Gcaud2873.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at NODE_931_length_16040_cov_4.143144:4496..5998- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGTGCATGCGTTGCTTCTTTGCAGCTTGCTGCTCTTCTCTGCCGC
GATCGCCGCCAACCCTTCCTTTCGCGATGTCACAGCGCAATCAGGAATCG
ACCGCAGCTCCGGAAAGATCAAGAAATACGGCGGTCCCGCCGTCGTCGAT
CTCGACCGCGACGGTCTGCCCGACCTGCTCTTCTGTCATCACGACTCTGC
GCGCACCGAGATGTACTTCAACAACGGCAACGGAACGTTTGTCAAGCAAA
AATGGGGCATTTTCCACGACTCGCACGGCTTCGCCGCCTTTCCCATATCG
CCGTGGAGCAAGAAGATGCGCTTCACGCTTTCCGTGGGTGGAAACTTCGG
CATGAACCCCAACAATCCGCTCATGTTCGAGGTGAACCCATACGACCGCT
CGGTGAGAGAAGTCACCGAAGAGGCCGGTATCACCGCCATTGGTGGGCGC
GGTAGATCCGCAGTGTACATGGATCTGGCCATGGGCGCACACCCATGGTG
GCCCGATGTGATCTACACCAACGCCTGGGCCATCGAAGGCATTCACCAGT
TTGCTTATGAGAACACGGGCGACCAAAAGTTCGCGCTTCGCGAGCTGAAA
GGCGGCTTTGAATGGACCAGAAACCCGATTGCCGTCGTGACCGACATGGA
GAACGACGGCATCATGGAGGTGTTGAGCATCTACTTTTTCACCGTGTGGA
AGCTCACTGCGCCGTTCAACATGGTGGACGTGTCGGACAAGGTGTTGCCG
CCCAACATGGCGCGGGAGGGAGTTGTGTCCGTGGCTGAAATTGACTATGA
CGGCGACGGCGACTTCGACTTGTACCTGTCCAGGGACAGAATCGGCTTCT
GGATGCCGGACACCGTGTACCACGACATTCTGCTCGAAAACCGCGACGGG
CGCTACGTCGACGTGAGCGTGAAGGCCGGCATTCCGCGCGGCACGCCGTC
GCGCGGCGTGACCACCGGAGACTTCAACAACGACGGTCTGATGGATCTTC
ACGTGTCGCAGTTCACCGGCAGCGACATTGTGCTGCTCAACAACGGAGAC
GGCACGTTCCGGCGCGTGAACGGGCTCACCACGCACGCGGCCGACACGCG
CGGCGACATGTCTGCGGCGGTGGACTACGACATGGACGGGCGCGTGGATC
TGATCATGAGCGAGGGCGATCAGGACGAGGACCCCATCGGCGGGACTTAC
CGTGTGTACAAGAACGTGATGTCGCGCGAGGACAACTACATACACGTGCG
CGTGGGCAACCCGTCCGACAGAAGCTGTACGCCGCTCAACGCGGTGGTGA
TTGTGAAGGCGGGCGATTTGAGCATGGTGCGCCGCGTGGGCTCGCCGGGC
ACGTACGTGTCGCCGTCGTACATGGAGACGCTGCACTTCGGGCTGGGCGC
GCGCTCGGTGGTGGACTCCATCTCCGTGCGCTACACCAACGGCAAGGTGG
AGCGCGTGGAGAACGTCACGCCGCGACGAACTGTGTTGCTGGGCGTGTTG
TGA

protein sequence of Gcaud2873.t1

>Gcaud2873.t1 ID=Gcaud2873.t1|Name=Gcaud2873.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=501bp
MAVHALLLCSLLLFSAAIAANPSFRDVTAQSGIDRSSGKIKKYGGPAVVD
LDRDGLPDLLFCHHDSARTEMYFNNGNGTFVKQKWGIFHDSHGFAAFPIS
PWSKKMRFTLSVGGNFGMNPNNPLMFEVNPYDRSVREVTEEAGITAIGGR
GRSAVYMDLAMGAHPWWPDVIYTNAWAIEGIHQFAYENTGDQKFALRELK
GGFEWTRNPIAVVTDMENDGIMEVLSIYFFTVWKLTAPFNMVDVSDKVLP
PNMAREGVVSVAEIDYDGDGDFDLYLSRDRIGFWMPDTVYHDILLENRDG
RYVDVSVKAGIPRGTPSRGVTTGDFNNDGLMDLHVSQFTGSDIVLLNNGD
GTFRRVNGLTTHAADTRGDMSAAVDYDMDGRVDLIMSEGDQDEDPIGGTY
RVYKNVMSREDNYIHVRVGNPSDRSCTPLNAVVIVKAGDLSMVRRVGSPG
TYVSPSYMETLHFGLGARSVVDSISVRYTNGKVERVENVTPRRTVLLGVL
*

mRNA from alignment at NODE_931_length_16040_cov_4.143144:4496..5998-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2873.t1 ID=Gcaud2873.t1|Name=Gcaud2873.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at NODE_931_length_16040_cov_4.143144:4496..5998- (Gracilaria caudata M_176_S67 male)
ATGGCTGTGCATGCGTTGCTTCTTTGCAGCTTGCTGCTCTTCTCTGCCGC
GATCGCCGCCAACCCTTCCTTTCGCGATGTCACAGCGCAATCAGGAATCG
ACCGCAGCTCCGGAAAGATCAAGAAATACGGCGGTCCCGCCGTCGTCGAT
CTCGACCGCGACGGTCTGCCCGACCTGCTCTTCTGTCATCACGACTCTGC
GCGCACCGAGATGTACTTCAACAACGGCAACGGAACGTTTGTCAAGCAAA
AATGGGGCATTTTCCACGACTCGCACGGCTTCGCCGCCTTTCCCATATCG
CCGTGGAGCAAGAAGATGCGCTTCACGCTTTCCGTGGGTGGAAACTTCGG
CATGAACCCCAACAATCCGCTCATGTTCGAGGTGAACCCATACGACCGCT
CGGTGAGAGAAGTCACCGAAGAGGCCGGTATCACCGCCATTGGTGGGCGC
GGTAGATCCGCAGTGTACATGGATCTGGCCATGGGCGCACACCCATGGTG
GCCCGATGTGATCTACACCAACGCCTGGGCCATCGAAGGCATTCACCAGT
TTGCTTATGAGAACACGGGCGACCAAAAGTTCGCGCTTCGCGAGCTGAAA
GGCGGCTTTGAATGGACCAGAAACCCGATTGCCGTCGTGACCGACATGGA
GAACGACGGCATCATGGAGGTGTTGAGCATCTACTTTTTCACCGTGTGGA
AGCTCACTGCGCCGTTCAACATGGTGGACGTGTCGGACAAGGTGTTGCCG
CCCAACATGGCGCGGGAGGGAGTTGTGTCCGTGGCTGAAATTGACTATGA
CGGCGACGGCGACTTCGACTTGTACCTGTCCAGGGACAGAATCGGCTTCT
GGATGCCGGACACCGTGTACCACGACATTCTGCTCGAAAACCGCGACGGG
CGCTACGTCGACGTGAGCGTGAAGGCCGGCATTCCGCGCGGCACGCCGTC
GCGCGGCGTGACCACCGGAGACTTCAACAACGACGGTCTGATGGATCTTC
ACGTGTCGCAGTTCACCGGCAGCGACATTGTGCTGCTCAACAACGGAGAC
GGCACGTTCCGGCGCGTGAACGGGCTCACCACGCACGCGGCCGACACGCG
CGGCGACATGTCTGCGGCGGTGGACTACGACATGGACGGGCGCGTGGATC
TGATCATGAGCGAGGGCGATCAGGACGAGGACCCCATCGGCGGGACTTAC
CGTGTGTACAAGAACGTGATGTCGCGCGAGGACAACTACATACACGTGCG
CGTGGGCAACCCGTCCGACAGAAGCTGTACGCCGCTCAACGCGGTGGTGA
TTGTGAAGGCGGGCGATTTGAGCATGGTGCGCCGCGTGGGCTCGCCGGGC
ACGTACGTGTCGCCGTCGTACATGGAGACGCTGCACTTCGGGCTGGGCGC
GCGCTCGGTGGTGGACTCCATCTCCGTGCGCTACACCAACGGCAAGGTGG
AGCGCGTGGAGAACGTCACGCCGCGACGAACTGTGTTGCTGGGCGTGTTG
TGA

Coding sequence (CDS) from alignment at NODE_931_length_16040_cov_4.143144:4496..5998-

>Gcaud2873.t1 ID=Gcaud2873.t1|Name=Gcaud2873.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1503bp|location=Sequence derived from alignment at NODE_931_length_16040_cov_4.143144:4496..5998- (Gracilaria caudata M_176_S67 male)
ATGGCTGTGCATGCGTTGCTTCTTTGCAGCTTGCTGCTCTTCTCTGCCGC
GATCGCCGCCAACCCTTCCTTTCGCGATGTCACAGCGCAATCAGGAATCG
ACCGCAGCTCCGGAAAGATCAAGAAATACGGCGGTCCCGCCGTCGTCGAT
CTCGACCGCGACGGTCTGCCCGACCTGCTCTTCTGTCATCACGACTCTGC
GCGCACCGAGATGTACTTCAACAACGGCAACGGAACGTTTGTCAAGCAAA
AATGGGGCATTTTCCACGACTCGCACGGCTTCGCCGCCTTTCCCATATCG
CCGTGGAGCAAGAAGATGCGCTTCACGCTTTCCGTGGGTGGAAACTTCGG
CATGAACCCCAACAATCCGCTCATGTTCGAGGTGAACCCATACGACCGCT
CGGTGAGAGAAGTCACCGAAGAGGCCGGTATCACCGCCATTGGTGGGCGC
GGTAGATCCGCAGTGTACATGGATCTGGCCATGGGCGCACACCCATGGTG
GCCCGATGTGATCTACACCAACGCCTGGGCCATCGAAGGCATTCACCAGT
TTGCTTATGAGAACACGGGCGACCAAAAGTTCGCGCTTCGCGAGCTGAAA
GGCGGCTTTGAATGGACCAGAAACCCGATTGCCGTCGTGACCGACATGGA
GAACGACGGCATCATGGAGGTGTTGAGCATCTACTTTTTCACCGTGTGGA
AGCTCACTGCGCCGTTCAACATGGTGGACGTGTCGGACAAGGTGTTGCCG
CCCAACATGGCGCGGGAGGGAGTTGTGTCCGTGGCTGAAATTGACTATGA
CGGCGACGGCGACTTCGACTTGTACCTGTCCAGGGACAGAATCGGCTTCT
GGATGCCGGACACCGTGTACCACGACATTCTGCTCGAAAACCGCGACGGG
CGCTACGTCGACGTGAGCGTGAAGGCCGGCATTCCGCGCGGCACGCCGTC
GCGCGGCGTGACCACCGGAGACTTCAACAACGACGGTCTGATGGATCTTC
ACGTGTCGCAGTTCACCGGCAGCGACATTGTGCTGCTCAACAACGGAGAC
GGCACGTTCCGGCGCGTGAACGGGCTCACCACGCACGCGGCCGACACGCG
CGGCGACATGTCTGCGGCGGTGGACTACGACATGGACGGGCGCGTGGATC
TGATCATGAGCGAGGGCGATCAGGACGAGGACCCCATCGGCGGGACTTAC
CGTGTGTACAAGAACGTGATGTCGCGCGAGGACAACTACATACACGTGCG
CGTGGGCAACCCGTCCGACAGAAGCTGTACGCCGCTCAACGCGGTGGTGA
TTGTGAAGGCGGGCGATTTGAGCATGGTGCGCCGCGTGGGCTCGCCGGGC
ACGTACGTGTCGCCGTCGTACATGGAGACGCTGCACTTCGGGCTGGGCGC
GCGCTCGGTGGTGGACTCCATCTCCGTGCGCTACACCAACGGCAAGGTGG
AGCGCGTGGAGAACGTCACGCCGCGACGAACTGTGTTGCTGGGCGTGTTG
TGA