Gcaud2867.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2867.t1
Unique NameGcaud2867.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length356
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_154_length_42890_cov_4.399939contigNODE_154_length_42890_cov_4.399939:1166..2233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705792.1
Preferred nameAIFM1
PFAMsAIF-MLS,AIF_C,Pyr_redox_2
Max annot lvl2759|Eukaryota
KEGG rclassRC00176
KEGG koko:K04727,ko:K17877
KEGG ReactionR00787,R00789
KEGG Pathwayko00910,ko01120,ko04210,ko04214,ko04217,map00910,map01120,map04210,map04214,map04217
KEGG ModuleM00531
GOsGO:0000166,GO:0000302,GO:0000737,GO:0001101,GO:0002931,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004174,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005743,GO:0005758,GO:0005829,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006259,GO:0006308,GO:0006309,GO:0006323,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006919,GO:0006921,GO:0006950,GO:0006952,GO:0006979,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007584,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009055,GO:0009056,GO:0009057,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009605,GO:0009607,GO:0009620,GO:0009628,GO:0009636,GO:0009719,GO:0009725,GO:0009893,GO:0009894,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010257,GO:0010604,GO:0010623,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0014070,GO:0015980,GO:0016020,GO:0016043,GO:0016174,GO:0016310,GO:0016491,GO:0016645,GO:0016649,GO:0016651,GO:0017144,GO:0019219,GO:0019222,GO:0019439,GO:0019637,GO:0019693,GO:0019866,GO:0019867,GO:0019899,GO:0022008,GO:0022411,GO:0022607,GO:0022900,GO:0022904,GO:0023052,GO:0030154,GO:0030162,GO:0030182,GO:0030261,GO:0030262,GO:0031090,GO:0031323,GO:0031325,GO:0031329,GO:0031667,GO:0031668,GO:0031669,GO:0031960,GO:0031966,GO:0031967,GO:0031968,GO:0031970,GO:0031974,GO:0031975,GO:0032268,GO:0032270,GO:0032355,GO:0032368,GO:0032370,GO:0032409,GO:0032411,GO:0032501,GO:0032502,GO:0032870,GO:0032879,GO:0032981,GO:0033108,GO:0033554,GO:0033993,GO:0034599,GO:0034614,GO:0034622,GO:0034641,GO:0034655,GO:0034976,GO:0035556,GO:0035690,GO:0036094,GO:0036293,GO:0036294,GO:0042221,GO:0042493,GO:0042542,GO:0042773,GO:0042775,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043200,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043269,GO:0043270,GO:0043280,GO:0043281,GO:0043523,GO:0043525,GO:0043933,GO:0044070,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0045862,GO:0046034,GO:0046483,GO:0046677,GO:0046700,GO:0048037,GO:0048468,GO:0048471,GO:0048518,GO:0048522,GO:0048545,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050660,GO:0050662,GO:0050664,GO:0050789,GO:0050790,GO:0050794,GO:0050832,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051276,GO:0051336,GO:0051345,GO:0051385,GO:0051402,GO:0051704,GO:0051707,GO:0051716,GO:0052547,GO:0052548,GO:0055086,GO:0055114,GO:0060255,GO:0061024,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070059,GO:0070301,GO:0070482,GO:0070887,GO:0070997,GO:0071103,GO:0071236,GO:0071241,GO:0071310,GO:0071383,GO:0071384,GO:0071389,GO:0071392,GO:0071396,GO:0071407,GO:0071453,GO:0071495,GO:0071496,GO:0071704,GO:0071731,GO:0071732,GO:0071840,GO:0071949,GO:0072521,GO:0080090,GO:0090304,GO:0090305,GO:0090649,GO:0090650,GO:0097035,GO:0097159,GO:0097190,GO:0097193,GO:0097194,GO:0097237,GO:0097305,GO:0097306,GO:0097366,GO:0098542,GO:0098588,GO:0098805,GO:0110096,GO:1900117,GO:1900119,GO:1900161,GO:1900163,GO:1901135,GO:1901214,GO:1901216,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902065,GO:1902170,GO:1902510,GO:1903624,GO:1903729,GO:1903793,GO:1904044,GO:1904045,GO:1905780,GO:1905782,GO:1905952,GO:1905954,GO:2000116,GO:2001056,GO:2001138,GO:2001140
Evalue4.17e-67
EggNOG OGsCOG0446@1|root,KOG1346@2759|Eukaryota
EC1.7.1.4
Descriptionapoptosis-inducing factor
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2867Gcaud2867Gracilaria caudata M_176_S67 malegeneNODE_154_length_42890_cov_4.399939 1166..2233 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2867.t1.start1Gcaud2867.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_154_length_42890_cov_4.399939 1166..1168 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2867.t1.CDS1Gcaud2867.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_154_length_42890_cov_4.399939 1166..2233 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2867.t1.exon1Gcaud2867.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_154_length_42890_cov_4.399939 1166..2233 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2867.t1.stop1Gcaud2867.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_154_length_42890_cov_4.399939 2231..2233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2867.t1Gcaud2867.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_154_length_42890_cov_4.399939 1166..2233 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2867.t1 ID=Gcaud2867.t1|Name=Gcaud2867.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=356bp
LDPDLKFVQLSSSHGITYDKLLLATGGVPRAPLSVAPALHNPNVSNHVST
FRTLQDYYDLRDKLQQQPEQSIAIVGGGLLGTELALALTALSDNVSLVIT
EPGVLFRVLPRYLCQFLAKELDKASVNVVHSAVITDVPVSADDKKVTLHI
DSAKPMQLDVNHVVVAVGIEPSTQLAKTAGLEIDPNNDGIRVNDFMMVEP
DVFAAGDVASFHDRVLGRQRVEHWDHTVVSGNIAGANMTGARERYKLQSM
IWSDLSTIGVHFTTVELVDSTLLTVSVWNLAGEANVDVPSLNAFESGVVY
YLNERGEFVGVVLWNQKRGAGGLRRARALVDAKTDVELLDEHTLAALCNL
ENAQI*
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spliced messenger RNA

>Gcaud2867.t1 ID=Gcaud2867.t1|Name=Gcaud2867.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1068bp|location=Sequence derived from alignment at NODE_154_length_42890_cov_4.399939:1166..2233+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGATCCCGATCTTAAGTTTGTTCAGCTCTCTTCCAGTCATGGCATAAC
GTACGACAAGCTGCTGCTCGCAACGGGTGGCGTGCCACGCGCGCCGCTAT
CTGTCGCGCCAGCTCTGCATAATCCAAACGTTAGTAATCATGTTTCTACC
TTCCGCACGCTGCAGGATTATTATGATTTGCGAGACAAACTGCAACAACA
GCCCGAGCAGTCTATAGCCATTGTCGGCGGAGGTTTGTTAGGCACTGAAC
TTGCGCTCGCTCTGACCGCGCTTTCTGACAACGTCTCGCTTGTCATAACC
GAACCAGGAGTGCTCTTCCGTGTTCTACCGCGCTACTTGTGTCAGTTTCT
GGCGAAAGAGCTTGACAAAGCGTCCGTCAATGTCGTTCATAGTGCTGTCA
TAACTGATGTCCCGGTCTCTGCGGATGACAAAAAAGTAACTTTGCATATC
GACTCCGCCAAACCAATGCAGCTTGACGTCAATCACGTTGTAGTGGCAGT
TGGTATCGAGCCTTCCACCCAACTAGCAAAAACCGCTGGCCTGGAAATTG
ATCCTAACAACGATGGAATTCGCGTCAACGATTTCATGATGGTTGAACCC
GACGTGTTTGCGGCCGGCGACGTGGCATCCTTTCATGACCGCGTTTTAGG
TCGTCAACGTGTCGAACATTGGGATCATACCGTTGTTAGTGGCAACATTG
CGGGAGCCAACATGACAGGCGCCAGGGAACGCTACAAGTTGCAATCCATG
ATTTGGAGCGATCTGTCTACCATTGGGGTGCATTTCACCACCGTTGAACT
CGTTGACTCCACGCTACTAACCGTATCAGTGTGGAATCTTGCTGGTGAAG
CTAATGTTGACGTGCCTTCGCTCAATGCATTTGAGTCTGGCGTTGTTTAC
TATCTGAACGAGCGCGGCGAGTTTGTCGGCGTGGTGTTGTGGAACCAAAA
GAGAGGAGCTGGTGGCTTGCGGAGGGCCAGGGCGTTGGTTGATGCCAAGA
CGGACGTTGAGCTTCTTGACGAACACACGTTGGCCGCGCTTTGCAACCTC
GAGAACGCGCAAATTTGA
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protein sequence of Gcaud2867.t1

>Gcaud2867.t1 ID=Gcaud2867.t1|Name=Gcaud2867.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=356bp
LDPDLKFVQLSSSHGITYDKLLLATGGVPRAPLSVAPALHNPNVSNHVST
FRTLQDYYDLRDKLQQQPEQSIAIVGGGLLGTELALALTALSDNVSLVIT
EPGVLFRVLPRYLCQFLAKELDKASVNVVHSAVITDVPVSADDKKVTLHI
DSAKPMQLDVNHVVVAVGIEPSTQLAKTAGLEIDPNNDGIRVNDFMMVEP
DVFAAGDVASFHDRVLGRQRVEHWDHTVVSGNIAGANMTGARERYKLQSM
IWSDLSTIGVHFTTVELVDSTLLTVSVWNLAGEANVDVPSLNAFESGVVY
YLNERGEFVGVVLWNQKRGAGGLRRARALVDAKTDVELLDEHTLAALCNL
ENAQI*
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mRNA from alignment at NODE_154_length_42890_cov_4.399939:1166..2233+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2867.t1 ID=Gcaud2867.t1|Name=Gcaud2867.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1068bp|location=Sequence derived from alignment at NODE_154_length_42890_cov_4.399939:1166..2233+ (Gracilaria caudata M_176_S67 male)
CTGGATCCCGATCTTAAGTTTGTTCAGCTCTCTTCCAGTCATGGCATAAC
GTACGACAAGCTGCTGCTCGCAACGGGTGGCGTGCCACGCGCGCCGCTAT
CTGTCGCGCCAGCTCTGCATAATCCAAACGTTAGTAATCATGTTTCTACC
TTCCGCACGCTGCAGGATTATTATGATTTGCGAGACAAACTGCAACAACA
GCCCGAGCAGTCTATAGCCATTGTCGGCGGAGGTTTGTTAGGCACTGAAC
TTGCGCTCGCTCTGACCGCGCTTTCTGACAACGTCTCGCTTGTCATAACC
GAACCAGGAGTGCTCTTCCGTGTTCTACCGCGCTACTTGTGTCAGTTTCT
GGCGAAAGAGCTTGACAAAGCGTCCGTCAATGTCGTTCATAGTGCTGTCA
TAACTGATGTCCCGGTCTCTGCGGATGACAAAAAAGTAACTTTGCATATC
GACTCCGCCAAACCAATGCAGCTTGACGTCAATCACGTTGTAGTGGCAGT
TGGTATCGAGCCTTCCACCCAACTAGCAAAAACCGCTGGCCTGGAAATTG
ATCCTAACAACGATGGAATTCGCGTCAACGATTTCATGATGGTTGAACCC
GACGTGTTTGCGGCCGGCGACGTGGCATCCTTTCATGACCGCGTTTTAGG
TCGTCAACGTGTCGAACATTGGGATCATACCGTTGTTAGTGGCAACATTG
CGGGAGCCAACATGACAGGCGCCAGGGAACGCTACAAGTTGCAATCCATG
ATTTGGAGCGATCTGTCTACCATTGGGGTGCATTTCACCACCGTTGAACT
CGTTGACTCCACGCTACTAACCGTATCAGTGTGGAATCTTGCTGGTGAAG
CTAATGTTGACGTGCCTTCGCTCAATGCATTTGAGTCTGGCGTTGTTTAC
TATCTGAACGAGCGCGGCGAGTTTGTCGGCGTGGTGTTGTGGAACCAAAA
GAGAGGAGCTGGTGGCTTGCGGAGGGCCAGGGCGTTGGTTGATGCCAAGA
CGGACGTTGAGCTTCTTGACGAACACACGTTGGCCGCGCTTTGCAACCTC
GAGAACGCGCAAATTTGA
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Coding sequence (CDS) from alignment at NODE_154_length_42890_cov_4.399939:1166..2233+

>Gcaud2867.t1 ID=Gcaud2867.t1|Name=Gcaud2867.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1068bp|location=Sequence derived from alignment at NODE_154_length_42890_cov_4.399939:1166..2233+ (Gracilaria caudata M_176_S67 male)
CTGGATCCCGATCTTAAGTTTGTTCAGCTCTCTTCCAGTCATGGCATAAC
GTACGACAAGCTGCTGCTCGCAACGGGTGGCGTGCCACGCGCGCCGCTAT
CTGTCGCGCCAGCTCTGCATAATCCAAACGTTAGTAATCATGTTTCTACC
TTCCGCACGCTGCAGGATTATTATGATTTGCGAGACAAACTGCAACAACA
GCCCGAGCAGTCTATAGCCATTGTCGGCGGAGGTTTGTTAGGCACTGAAC
TTGCGCTCGCTCTGACCGCGCTTTCTGACAACGTCTCGCTTGTCATAACC
GAACCAGGAGTGCTCTTCCGTGTTCTACCGCGCTACTTGTGTCAGTTTCT
GGCGAAAGAGCTTGACAAAGCGTCCGTCAATGTCGTTCATAGTGCTGTCA
TAACTGATGTCCCGGTCTCTGCGGATGACAAAAAAGTAACTTTGCATATC
GACTCCGCCAAACCAATGCAGCTTGACGTCAATCACGTTGTAGTGGCAGT
TGGTATCGAGCCTTCCACCCAACTAGCAAAAACCGCTGGCCTGGAAATTG
ATCCTAACAACGATGGAATTCGCGTCAACGATTTCATGATGGTTGAACCC
GACGTGTTTGCGGCCGGCGACGTGGCATCCTTTCATGACCGCGTTTTAGG
TCGTCAACGTGTCGAACATTGGGATCATACCGTTGTTAGTGGCAACATTG
CGGGAGCCAACATGACAGGCGCCAGGGAACGCTACAAGTTGCAATCCATG
ATTTGGAGCGATCTGTCTACCATTGGGGTGCATTTCACCACCGTTGAACT
CGTTGACTCCACGCTACTAACCGTATCAGTGTGGAATCTTGCTGGTGAAG
CTAATGTTGACGTGCCTTCGCTCAATGCATTTGAGTCTGGCGTTGTTTAC
TATCTGAACGAGCGCGGCGAGTTTGTCGGCGTGGTGTTGTGGAACCAAAA
GAGAGGAGCTGGTGGCTTGCGGAGGGCCAGGGCGTTGGTTGATGCCAAGA
CGGACGTTGAGCTTCTTGACGAACACACGTTGGCCGCGCTTTGCAACCTC
GAGAACGCGCAAATTTGA
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