Gcaud2857.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2857.t1
Unique Name	Gcaud2857.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	279

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_7_length_102599_cov_4.541909	contig	NODE_7_length_102599_cov_4.541909:88615..89451 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	9031.ENSGALP00000023415
Preferred name	WBSCR22
PFAMs	Methyltransf_11,Methyltransf_25,WBS_methylT
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K19306
GOs	GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0019219,GO:0019222,GO:0022613,GO:0031167,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045935,GO:0046483,GO:0046982,GO:0046983,GO:0048471,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0140098,GO:0140102,GO:1901360,GO:2000232,GO:2000234
Evalue	2.13e-101
EggNOG OGs	COG0500@1\|root,KOG1541@2759\|Eukaryota,38E9S@33154\|Opisthokonta,3BBY9@33208\|Metazoa,3CSCU@33213\|Bilateria,48BJB@7711\|Chordata,493H8@7742\|Vertebrata,4GPQS@8782\|Aves
EC	2.1.1.309
Description	syndrome chromosome region 22
COG category	Q
BRITE	ko00000,ko01000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2857	Gcaud2857	Gracilaria caudata M_176_S67 male	gene	NODE_7_length_102599_cov_4.541909 88615..89451 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2857.t1.start1	Gcaud2857.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_7_length_102599_cov_4.541909 88615..88617 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2857.t1.CDS1	Gcaud2857.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_7_length_102599_cov_4.541909 88615..89451 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2857.t1.exon1	Gcaud2857.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_7_length_102599_cov_4.541909 88615..89451 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2857.t1.stop1	Gcaud2857.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_7_length_102599_cov_4.541909 89449..89451 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2857.t1	Gcaud2857.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_7_length_102599_cov_4.541909 88615..89451 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_7_length_102599_cov_4.541909:88615..89451+
coding sequence from alignment at NODE_7_length_102599_cov_4.541909:88615..89451+

mRNA sequence

>Gcaud2857.t1 ID=Gcaud2857.t1|Name=Gcaud2857.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=279bp
MSRRPEHAGPATEFYSAKGAAKYAASSRINTVQKTLAQRCVELLALPPNE
PCLLLDIGTGTGLSGDMLTKAGHHWVGTDVSQAMLDTALENDVQGDLMLA
DAGDGVAFRMGCFDGAISVSAVQWLCNADRSDHNPHKRINAFFSSLYATL
RRGARAVLQFYPENVAQIELLVASAMRAGFSGGLLVDYPNSAKAKKYYLC
LTAGPPVKGAVQPKPLGVDSNHNVPIGNRKSNKKGSKSFNDSVTRKDWII
SKKERRRRQGHVVRPDSKYTGRKRRVQF*

spliced messenger RNA

>Gcaud2857.t1 ID=Gcaud2857.t1|Name=Gcaud2857.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=837bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:88615..89451+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGCCGTCCGGAGCATGCGGGTCCGGCCACCGAGTTCTACTCTGC
CAAGGGCGCCGCCAAGTACGCTGCCAGCTCTCGAATCAATACCGTACAGA
AGAcgctcgcgcagcgctgcgtggagctgctcgcgctgcCTCCAAACGAA
CCCTGTTTACTGCTTGACATCGGAACTGGCACAGGACTCTCCGGCGACAT
GCTCACAAAAGCCGGTCATCACTGGGTCGGCACCGATGTGTCACAGGCCA
TGCTTGACACAGCGCTTGAGAATGATGTGCAGGGCGATTTAATGCTCGCC
GATGCTGGCGATGGCGTTGCGTTTCGAATGGGATGCTTTGATGGGGCCAT
ATCCGTTTCGGCTGTTCAGTGGCTCTGTAACGCTGATCGTTCCGATCATA
ATCCCCATAAGCGTATCAATGCGTTTTTCTCCTCGCTCTACGCGACGTTG
CGACGCGGGGCAAGGGCTGTGTTGCAGTTCTATCCGGAGAATGTTGCACA
GATTGAGCTGCTCGTTGCCTCTGCCATGCGTGCGGGCTTCAGTGGTGGCT
TGTTGGTAGATTACCCTAACAGCGCCAAAGCAAAGAAGTACTACCTCTGT
TTGACCGCTGGTCCGCCGGTAAAGGGTGCTGTACAGCCAAAACCACTTGG
AGTTGACAGCAATCACAACGTCCCTATCGGAAATCGCAAGTCAAACAAAA
AAGGCAGCAAATCCTTCAATGACTCTGTAACAAGGAAGGATTGGATTATA
TCTAAGAAGGAACGAAGACGTCGCCAAGGTCATGTAGTCAGACCTGACTC
TAAGTACACTGGAAGGAAACGAAGAGTCCAGTTTTGA

protein sequence of Gcaud2857.t1

>Gcaud2857.t1 ID=Gcaud2857.t1|Name=Gcaud2857.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=279bp
MSRRPEHAGPATEFYSAKGAAKYAASSRINTVQKTLAQRCVELLALPPNE
PCLLLDIGTGTGLSGDMLTKAGHHWVGTDVSQAMLDTALENDVQGDLMLA
DAGDGVAFRMGCFDGAISVSAVQWLCNADRSDHNPHKRINAFFSSLYATL
RRGARAVLQFYPENVAQIELLVASAMRAGFSGGLLVDYPNSAKAKKYYLC
LTAGPPVKGAVQPKPLGVDSNHNVPIGNRKSNKKGSKSFNDSVTRKDWII
SKKERRRRQGHVVRPDSKYTGRKRRVQF*

mRNA from alignment at NODE_7_length_102599_cov_4.541909:88615..89451+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2857.t1 ID=Gcaud2857.t1|Name=Gcaud2857.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=837bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:88615..89451+ (Gracilaria caudata M_176_S67 male)
ATGTCGCGCCGTCCGGAGCATGCGGGTCCGGCCACCGAGTTCTACTCTGC
CAAGGGCGCCGCCAAGTACGCTGCCAGCTCTCGAATCAATACCGTACAGA
AGAcgctcgcgcagcgctgcgtggagctgctcgcgctgcCTCCAAACGAA
CCCTGTTTACTGCTTGACATCGGAACTGGCACAGGACTCTCCGGCGACAT
GCTCACAAAAGCCGGTCATCACTGGGTCGGCACCGATGTGTCACAGGCCA
TGCTTGACACAGCGCTTGAGAATGATGTGCAGGGCGATTTAATGCTCGCC
GATGCTGGCGATGGCGTTGCGTTTCGAATGGGATGCTTTGATGGGGCCAT
ATCCGTTTCGGCTGTTCAGTGGCTCTGTAACGCTGATCGTTCCGATCATA
ATCCCCATAAGCGTATCAATGCGTTTTTCTCCTCGCTCTACGCGACGTTG
CGACGCGGGGCAAGGGCTGTGTTGCAGTTCTATCCGGAGAATGTTGCACA
GATTGAGCTGCTCGTTGCCTCTGCCATGCGTGCGGGCTTCAGTGGTGGCT
TGTTGGTAGATTACCCTAACAGCGCCAAAGCAAAGAAGTACTACCTCTGT
TTGACCGCTGGTCCGCCGGTAAAGGGTGCTGTACAGCCAAAACCACTTGG
AGTTGACAGCAATCACAACGTCCCTATCGGAAATCGCAAGTCAAACAAAA
AAGGCAGCAAATCCTTCAATGACTCTGTAACAAGGAAGGATTGGATTATA
TCTAAGAAGGAACGAAGACGTCGCCAAGGTCATGTAGTCAGACCTGACTC
TAAGTACACTGGAAGGAAACGAAGAGTCCAGTTTTGA

Coding sequence (CDS) from alignment at NODE_7_length_102599_cov_4.541909:88615..89451+

>Gcaud2857.t1 ID=Gcaud2857.t1|Name=Gcaud2857.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=837bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:88615..89451+ (Gracilaria caudata M_176_S67 male)
ATGTCGCGCCGTCCGGAGCATGCGGGTCCGGCCACCGAGTTCTACTCTGC
CAAGGGCGCCGCCAAGTACGCTGCCAGCTCTCGAATCAATACCGTACAGA
AGAcgctcgcgcagcgctgcgtggagctgctcgcgctgcCTCCAAACGAA
CCCTGTTTACTGCTTGACATCGGAACTGGCACAGGACTCTCCGGCGACAT
GCTCACAAAAGCCGGTCATCACTGGGTCGGCACCGATGTGTCACAGGCCA
TGCTTGACACAGCGCTTGAGAATGATGTGCAGGGCGATTTAATGCTCGCC
GATGCTGGCGATGGCGTTGCGTTTCGAATGGGATGCTTTGATGGGGCCAT
ATCCGTTTCGGCTGTTCAGTGGCTCTGTAACGCTGATCGTTCCGATCATA
ATCCCCATAAGCGTATCAATGCGTTTTTCTCCTCGCTCTACGCGACGTTG
CGACGCGGGGCAAGGGCTGTGTTGCAGTTCTATCCGGAGAATGTTGCACA
GATTGAGCTGCTCGTTGCCTCTGCCATGCGTGCGGGCTTCAGTGGTGGCT
TGTTGGTAGATTACCCTAACAGCGCCAAAGCAAAGAAGTACTACCTCTGT
TTGACCGCTGGTCCGCCGGTAAAGGGTGCTGTACAGCCAAAACCACTTGG
AGTTGACAGCAATCACAACGTCCCTATCGGAAATCGCAAGTCAAACAAAA
AAGGCAGCAAATCCTTCAATGACTCTGTAACAAGGAAGGATTGGATTATA
TCTAAGAAGGAACGAAGACGTCGCCAAGGTCATGTAGTCAGACCTGACTC
TAAGTACACTGGAAGGAAACGAAGAGTCCAGTTTTGA