Gcaud2856.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2856.t1
Unique NameGcaud2856.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length548
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_7_length_102599_cov_4.541909contigNODE_7_length_102599_cov_4.541909:85874..87517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707843.1
Preferred namePGDH
PFAMs2-Hacid_dh,2-Hacid_dh_C,ACT
Max annot lvl2759|Eukaryota
KEGG rclassRC00031
KEGG koko:K00058
KEGG ReactionR01513
KEGG Pathwayko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230
KEGG ModuleM00020
GOsGO:0000003,GO:0000166,GO:0003006,GO:0003674,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0007275,GO:0008144,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009553,GO:0009555,GO:0009561,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0010154,GO:0016020,GO:0017076,GO:0022414,GO:0030554,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048229,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0097159,GO:0097367,GO:1901265,GO:1901363
Evalue1.3e-195
EggNOG OGsCOG0111@1|root,KOG0068@2759|Eukaryota
EC1.1.1.399,1.1.1.95
Descriptionphosphoglycerate dehydrogenase activity
COG categoryEH
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2856Gcaud2856Gracilaria caudata M_176_S67 malegeneNODE_7_length_102599_cov_4.541909 85874..87517 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2856.t1.stop1Gcaud2856.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_7_length_102599_cov_4.541909 85874..85876 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2856.t1.CDS1Gcaud2856.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_7_length_102599_cov_4.541909 85874..87517 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2856.t1.exon1Gcaud2856.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_7_length_102599_cov_4.541909 85874..87517 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2856.t1.start1Gcaud2856.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_7_length_102599_cov_4.541909 87515..87517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2856.t1Gcaud2856.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_7_length_102599_cov_4.541909 85874..87517 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2856.t1 ID=Gcaud2856.t1|Name=Gcaud2856.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=548bp
MVAVPEKVPTSAPVAADSMSILLPEKLSDAGVALLSSRFNVVKKLDLTPD
QLLSEIVNHDAIIVRSGTRMTRELIEAASKLKVIGRAGVGVDNIDIPAAT
ERGVLVVNAPTGNCVAAAEHTIALLCGLARLVSPADRTIKSGGWDRSKFV
GVSLVDKTLGVVGLGRIGREVAKRGQGLGMNIVASDPFASEEVAAAMGVT
LLPFEQVLEKCDFLTLHIPLIPSTKGMINADAIAKMKNGARIINAARGGI
VNETALLEALDSGKIAGAALDCFEFEPPSKHPESISAKLVQHPSVLATPH
LGASTKEAQLDVAVEIATAVRDSLDGDAVPTMINCPNISPEVLKTLKPRA
VLCEALGRLAYFVSGRMLHGEAVVDYFIPAASEDTRLLRTGLIKGLMEPS
LGVKVTIVNADNIAKRYNLKITETNHFSSESMDSEVVVTVRNSPPVEGRV
TSGNPHVTRIGRFEVDLRLDGLIMAYSQYDRPGQMGLVGSVLGEAGVNIS
SMTLARDKNSSKALVLLGLDSRPSEELVKKIEKLVDDEELRPIVMEF*
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spliced messenger RNA

>Gcaud2856.t1 ID=Gcaud2856.t1|Name=Gcaud2856.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1644bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:85874..87517- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCCGTTCCCGAAAAAGTGCCCACCTCCGCTCCCGTCGCCGCCGA
CTCTATGTCCATCCTTTTGCCGGAGAAGCTTTCTGATGCCGGAGTAGCTT
TACTTTCTAGTCGCTTTAACGTCGTGAAGAAACTCGACCTCACCCCGGAC
CAACTACTATCTGAGATTGTCAATCACGATGCCATCATCGTCCGCTCTGG
AACTCGAATGACCCGCGAGCTCATCGAAGCCGCTTCGAAGCTTAAGGTCA
TCGGCCGTGCCGGTGTTGGCGTGGATAACATTGACATCCCCGCCGCCACA
GAACGAGGTGTTCTTGTCGTCAACGCGCCTACTGGAAACTGTGTCGCCGC
TGCCGAACACACAATCGCTCTCCTGTGCGGACTAGCCCGTTTAGTCTCTC
CTGCCGACCGCACAATCAAGAGCGGTGGTTGGGATCGTTCCAAGTTTGTC
GGCGTTAGTTTGGTGGACAAGACTCTTGGCGTTGTCGGCTTGGGCAGGAT
TGGTAGGGAGGTTGCCAAACGGGGACAAGGACTTGGCATGAATATCGTCG
CCAGTGACCCTTTCGCAAGCGAGGAGGTCGCCGCGGCTATGGGAGTCACT
TTGTTACCGTTTGAGCAGGTTCTCGAAAAGTGTGACTTCCTCACTCTTCA
CATTCCTCTCATCCCGTCTACAAAGGGCATGATCAACGCCGATGCCATTG
CTAAGATGAAGAATGGGGCACGTATCATCAACGCTGCTCGTGGTGGCATT
GTCAACGAGACCGCTCTTCTCGAGGCCCTGGATTCTGGAAAGATTGCCGG
CGCTGCTCTGGATTGTTTCGAATTCGAACCTCCATCAAAACACCCGGAGT
CAATCTCGGCTAAGCTTGTTCAACATCCGTCTGTGTTGGCCACCCCTCAT
CTTGGTGCTAGTACCAAAGAGGCACAACTTGATGTCGCAGTGGAAATCGC
CACTGCTGTCAGGGACTCTCTGGATGGCGACGCGGTCCCTACCATGATCA
ACTGTCCCAACATATCCCCAGAGGTCTTGAAAACCCTGAAGCCACGTGCT
GTTCTGTGTGAGGCTTTAGGGCGCCTTGCTTATTTTGTTTCTGGACGTAT
GCTACACGGGGAGGCCGTAGTGGACTACTTCATCCCCGCCGCTAGTGAGG
ACACCAGGTTACTTCGTACTGGGCTTATTAAGGGGCTGATGGAACCGTCA
CTTGGTGTCAAGGTCACCATTGTTAATGCGGATAACATCGCAAAACGCTA
CAACCTGAAGATCACGGAAACAAATCATTTCTCATCAGAGAGTATGGACA
GCGAAGTCGTCGTGACCGTTCGCAACTCTCCGCCTGTTGAGGGCCGTGTC
ACCAGTGGAAATCCACATGTGACCAGAATCGGTCGTTTCGAGGTCGATCT
TCGTCTTGATGGCTTAATCATGGCGTACAGTCAGTATGATCGACCTGGAC
AGATGGGTTTGGTTGGAAGTGTACTTGGTGAAGCAGGTGTTAATATTTCG
TCAATGACTCTCGCCCGAGACAAAAACAGTTCGAAGGCATTGGTGCTCTT
GGGCCTTGACTCTCGACCGAGTGAAGAGCTTGTGAAAAAGATTGAGAAAC
TTGTGGACGATGAAGAACTGCGACCGATTGTGATGGAATTCTGA
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protein sequence of Gcaud2856.t1

>Gcaud2856.t1 ID=Gcaud2856.t1|Name=Gcaud2856.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=548bp
MVAVPEKVPTSAPVAADSMSILLPEKLSDAGVALLSSRFNVVKKLDLTPD
QLLSEIVNHDAIIVRSGTRMTRELIEAASKLKVIGRAGVGVDNIDIPAAT
ERGVLVVNAPTGNCVAAAEHTIALLCGLARLVSPADRTIKSGGWDRSKFV
GVSLVDKTLGVVGLGRIGREVAKRGQGLGMNIVASDPFASEEVAAAMGVT
LLPFEQVLEKCDFLTLHIPLIPSTKGMINADAIAKMKNGARIINAARGGI
VNETALLEALDSGKIAGAALDCFEFEPPSKHPESISAKLVQHPSVLATPH
LGASTKEAQLDVAVEIATAVRDSLDGDAVPTMINCPNISPEVLKTLKPRA
VLCEALGRLAYFVSGRMLHGEAVVDYFIPAASEDTRLLRTGLIKGLMEPS
LGVKVTIVNADNIAKRYNLKITETNHFSSESMDSEVVVTVRNSPPVEGRV
TSGNPHVTRIGRFEVDLRLDGLIMAYSQYDRPGQMGLVGSVLGEAGVNIS
SMTLARDKNSSKALVLLGLDSRPSEELVKKIEKLVDDEELRPIVMEF*
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mRNA from alignment at NODE_7_length_102599_cov_4.541909:85874..87517-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2856.t1 ID=Gcaud2856.t1|Name=Gcaud2856.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1644bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:85874..87517- (Gracilaria caudata M_176_S67 male)
ATGGTTGCCGTTCCCGAAAAAGTGCCCACCTCCGCTCCCGTCGCCGCCGA
CTCTATGTCCATCCTTTTGCCGGAGAAGCTTTCTGATGCCGGAGTAGCTT
TACTTTCTAGTCGCTTTAACGTCGTGAAGAAACTCGACCTCACCCCGGAC
CAACTACTATCTGAGATTGTCAATCACGATGCCATCATCGTCCGCTCTGG
AACTCGAATGACCCGCGAGCTCATCGAAGCCGCTTCGAAGCTTAAGGTCA
TCGGCCGTGCCGGTGTTGGCGTGGATAACATTGACATCCCCGCCGCCACA
GAACGAGGTGTTCTTGTCGTCAACGCGCCTACTGGAAACTGTGTCGCCGC
TGCCGAACACACAATCGCTCTCCTGTGCGGACTAGCCCGTTTAGTCTCTC
CTGCCGACCGCACAATCAAGAGCGGTGGTTGGGATCGTTCCAAGTTTGTC
GGCGTTAGTTTGGTGGACAAGACTCTTGGCGTTGTCGGCTTGGGCAGGAT
TGGTAGGGAGGTTGCCAAACGGGGACAAGGACTTGGCATGAATATCGTCG
CCAGTGACCCTTTCGCAAGCGAGGAGGTCGCCGCGGCTATGGGAGTCACT
TTGTTACCGTTTGAGCAGGTTCTCGAAAAGTGTGACTTCCTCACTCTTCA
CATTCCTCTCATCCCGTCTACAAAGGGCATGATCAACGCCGATGCCATTG
CTAAGATGAAGAATGGGGCACGTATCATCAACGCTGCTCGTGGTGGCATT
GTCAACGAGACCGCTCTTCTCGAGGCCCTGGATTCTGGAAAGATTGCCGG
CGCTGCTCTGGATTGTTTCGAATTCGAACCTCCATCAAAACACCCGGAGT
CAATCTCGGCTAAGCTTGTTCAACATCCGTCTGTGTTGGCCACCCCTCAT
CTTGGTGCTAGTACCAAAGAGGCACAACTTGATGTCGCAGTGGAAATCGC
CACTGCTGTCAGGGACTCTCTGGATGGCGACGCGGTCCCTACCATGATCA
ACTGTCCCAACATATCCCCAGAGGTCTTGAAAACCCTGAAGCCACGTGCT
GTTCTGTGTGAGGCTTTAGGGCGCCTTGCTTATTTTGTTTCTGGACGTAT
GCTACACGGGGAGGCCGTAGTGGACTACTTCATCCCCGCCGCTAGTGAGG
ACACCAGGTTACTTCGTACTGGGCTTATTAAGGGGCTGATGGAACCGTCA
CTTGGTGTCAAGGTCACCATTGTTAATGCGGATAACATCGCAAAACGCTA
CAACCTGAAGATCACGGAAACAAATCATTTCTCATCAGAGAGTATGGACA
GCGAAGTCGTCGTGACCGTTCGCAACTCTCCGCCTGTTGAGGGCCGTGTC
ACCAGTGGAAATCCACATGTGACCAGAATCGGTCGTTTCGAGGTCGATCT
TCGTCTTGATGGCTTAATCATGGCGTACAGTCAGTATGATCGACCTGGAC
AGATGGGTTTGGTTGGAAGTGTACTTGGTGAAGCAGGTGTTAATATTTCG
TCAATGACTCTCGCCCGAGACAAAAACAGTTCGAAGGCATTGGTGCTCTT
GGGCCTTGACTCTCGACCGAGTGAAGAGCTTGTGAAAAAGATTGAGAAAC
TTGTGGACGATGAAGAACTGCGACCGATTGTGATGGAATTCTGA
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Coding sequence (CDS) from alignment at NODE_7_length_102599_cov_4.541909:85874..87517-

>Gcaud2856.t1 ID=Gcaud2856.t1|Name=Gcaud2856.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1644bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:85874..87517- (Gracilaria caudata M_176_S67 male)
ATGGTTGCCGTTCCCGAAAAAGTGCCCACCTCCGCTCCCGTCGCCGCCGA
CTCTATGTCCATCCTTTTGCCGGAGAAGCTTTCTGATGCCGGAGTAGCTT
TACTTTCTAGTCGCTTTAACGTCGTGAAGAAACTCGACCTCACCCCGGAC
CAACTACTATCTGAGATTGTCAATCACGATGCCATCATCGTCCGCTCTGG
AACTCGAATGACCCGCGAGCTCATCGAAGCCGCTTCGAAGCTTAAGGTCA
TCGGCCGTGCCGGTGTTGGCGTGGATAACATTGACATCCCCGCCGCCACA
GAACGAGGTGTTCTTGTCGTCAACGCGCCTACTGGAAACTGTGTCGCCGC
TGCCGAACACACAATCGCTCTCCTGTGCGGACTAGCCCGTTTAGTCTCTC
CTGCCGACCGCACAATCAAGAGCGGTGGTTGGGATCGTTCCAAGTTTGTC
GGCGTTAGTTTGGTGGACAAGACTCTTGGCGTTGTCGGCTTGGGCAGGAT
TGGTAGGGAGGTTGCCAAACGGGGACAAGGACTTGGCATGAATATCGTCG
CCAGTGACCCTTTCGCAAGCGAGGAGGTCGCCGCGGCTATGGGAGTCACT
TTGTTACCGTTTGAGCAGGTTCTCGAAAAGTGTGACTTCCTCACTCTTCA
CATTCCTCTCATCCCGTCTACAAAGGGCATGATCAACGCCGATGCCATTG
CTAAGATGAAGAATGGGGCACGTATCATCAACGCTGCTCGTGGTGGCATT
GTCAACGAGACCGCTCTTCTCGAGGCCCTGGATTCTGGAAAGATTGCCGG
CGCTGCTCTGGATTGTTTCGAATTCGAACCTCCATCAAAACACCCGGAGT
CAATCTCGGCTAAGCTTGTTCAACATCCGTCTGTGTTGGCCACCCCTCAT
CTTGGTGCTAGTACCAAAGAGGCACAACTTGATGTCGCAGTGGAAATCGC
CACTGCTGTCAGGGACTCTCTGGATGGCGACGCGGTCCCTACCATGATCA
ACTGTCCCAACATATCCCCAGAGGTCTTGAAAACCCTGAAGCCACGTGCT
GTTCTGTGTGAGGCTTTAGGGCGCCTTGCTTATTTTGTTTCTGGACGTAT
GCTACACGGGGAGGCCGTAGTGGACTACTTCATCCCCGCCGCTAGTGAGG
ACACCAGGTTACTTCGTACTGGGCTTATTAAGGGGCTGATGGAACCGTCA
CTTGGTGTCAAGGTCACCATTGTTAATGCGGATAACATCGCAAAACGCTA
CAACCTGAAGATCACGGAAACAAATCATTTCTCATCAGAGAGTATGGACA
GCGAAGTCGTCGTGACCGTTCGCAACTCTCCGCCTGTTGAGGGCCGTGTC
ACCAGTGGAAATCCACATGTGACCAGAATCGGTCGTTTCGAGGTCGATCT
TCGTCTTGATGGCTTAATCATGGCGTACAGTCAGTATGATCGACCTGGAC
AGATGGGTTTGGTTGGAAGTGTACTTGGTGAAGCAGGTGTTAATATTTCG
TCAATGACTCTCGCCCGAGACAAAAACAGTTCGAAGGCATTGGTGCTCTT
GGGCCTTGACTCTCGACCGAGTGAAGAGCTTGTGAAAAAGATTGAGAAAC
TTGTGGACGATGAAGAACTGCGACCGATTGTGATGGAATTCTGA
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