Gcaud2855.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2855.t1
Unique Name	Gcaud2855.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	730

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_7_length_102599_cov_4.541909	contig	NODE_7_length_102599_cov_4.541909:83413..85602 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005702913.1
PFAMs	ABC1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08869
GOs	GO:0001101,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004693,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0006995,GO:0006996,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009314,GO:0009414,GO:0009415,GO:0009416,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009628,GO:0009639,GO:0009642,GO:0009644,GO:0009657,GO:0009658,GO:0009987,GO:0009991,GO:0010035,GO:0010114,GO:0010287,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0031279,GO:0031647,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0036211,GO:0042221,GO:0042594,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043562,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051716,GO:0051726,GO:0065007,GO:0065008,GO:0065009,GO:0071496,GO:0071704,GO:0071840,GO:0080177,GO:0080183,GO:0097472,GO:0140096,GO:1901564,GO:1901700,GO:1902171
Evalue	2.44e-253
EggNOG OGs	COG0661@1\|root,KOG1235@2759\|Eukaryota
Description	regulation of tocopherol cyclase activity
COG category	E
BRITE	ko00000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2855	Gcaud2855	Gracilaria caudata M_176_S67 male	gene	NODE_7_length_102599_cov_4.541909 83413..85602 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2855.t1.start1	Gcaud2855.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_7_length_102599_cov_4.541909 83413..83415 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2855.t1.CDS1	Gcaud2855.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_7_length_102599_cov_4.541909 83413..85602 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2855.t1.exon1	Gcaud2855.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_7_length_102599_cov_4.541909 83413..85602 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2855.t1.stop1	Gcaud2855.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_7_length_102599_cov_4.541909 85600..85602 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2855.t1	Gcaud2855.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_7_length_102599_cov_4.541909 83413..85602 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_7_length_102599_cov_4.541909:83413..85602+
coding sequence from alignment at NODE_7_length_102599_cov_4.541909:83413..85602+

mRNA sequence

>Gcaud2855.t1 ID=Gcaud2855.t1|Name=Gcaud2855.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=730bp
MPTSPLTAITTRSLTTRVLRRATTLRDAHRKPSFVSRTQCTMQALSTSER
SNAVRARLERAEQLLQQAREQAKTGKATSSVPSSDSQPARVGGAVETMES
IEEQAARAAKSADEGPRYDPQSAVQYFKSRAFYVRRRQLEIAIPLTSFVS
RVTLDFQLGTEEQNRPKRAREFLKIVSSLGPAIIKGGQAVSSRPDLLPKE
YLDELQKLQDRLPPFDNGIAFRLIEEELGKPVDQIFESIDPIPVAAASIG
QVYSATLASTGERVAVKVQRPDCEQIIALDIYILRNLSGSLSNILKLTGR
DIDLQSIVEEFGKLIYEEIDYLSEARNAERFLELYGDLPGVDVPKIYWRY
TKRRVITMQWMEGIRLNSDKLTRERSEELVRAMVQCSLRQMLENGYFHAD
THLGNLLATPTGNLCYLDFGMMSEVEPAQRYGIIEAVVHMVNRDFEALAN
LYVRLGFLPPETDLEPIIEALNKALPDVLGASVGELNFKSVIDKLGSVMY
QYPFRLPAYYTAIIRCLGVLEGVAIQVDPNFKILKESYPYIASRLLTDPA
PELQEALQCLLFDNGHPRWNRLESLLESASTAGDYDVSVAVEQLFSFLLS
PRGKLARYNLADEVTEELDALGVDLAKYYVGIAAQAGAAAGLRLPMFMRA
LPPPTRTRTMENARHMADILRNSKGFNPSKLSPIMRRFLREPESQRIGLE
VAISLAERITSRAVRFAFGLPQDEPRSRR*

spliced messenger RNA

>Gcaud2855.t1 ID=Gcaud2855.t1|Name=Gcaud2855.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2190bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:83413..85602+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCACATCACCACTCACCGCTATCACCACTCGCTCGCTCACGACTCG
AGTTCTTCGTCGAGCCACAACATTGCGCGACGCGCACCGAAAGCCCTCCT
TTGTATCCCGTACACAATGTACAATGCAAGCGCTCTCAACAAGCGAGCGT
TCCAATGCTGTTCGCGCCCGTCTCGAACGCGCGGAGCAACTCCTGCAACA
AGCGCGTGAACAAGCCAAAACAGGCAAAGCGACATCCAGTGTGCCCTCTT
CAGACAGTCAGCCTGCCCGCGTTGGCGGCGCTGTGGAAACTATGGAAAGC
ATAGAGGAACAGGCCGCACGCGCTGCGAAGAGTGCTGATGAGGGTCCTCG
ATACGATCCGCAATCCGCTGTACAATACTTCAAGTCTCGCGCGTTTTATG
TTCGTAGGAGACAACTTGAAATCGCGATTCCACTTACTTCATTTGTATCT
CGCGTAACTCTAGATTTCCAACTTGGTACGGAAGAACAGAATCGTCCTAA
ACGAGCTAGGGAATTTTTGAAAATTGTGTCTTCACTTGGACCTGCTATAA
TCAAAGGTGGTCAAGCTGTTTCATCACGTCCTGATTTGCTTCCAAAAGAG
TACTTGGATGAGCTACAGAAACTCCAAGATCGACTACCTCCTTTTGATAA
TGGTATTGCATTTCGATTGATTGAAGAGGAGTTAGGTAAACCGGTTGACC
AAATTTTCGAATCTATTGACCCAATCCCTGTGGCTGCTGCATCCATTGGA
CAAGTATATTCCGCGACGTTAGCAAGCACCGGAGAACGAGTGGCTGTCAA
GGTGCAACGACCGGATTGTGAACAGATCATCGCACTGGACATTTACATAC
TGCGCAATCTCAGCGGATCCCTCAGCAACATTTTGAAACTGACGGGAAGA
GATATTGATTTGCAAAGCATTGTAGAGGAATTTGGAAAGCTCATCTACGA
AGAGATAGACTACCTTTCTGAAGCTCGTAATGCAGAAAGGTTTCTTGAAT
TGTATGGAGATTTGCCTGGTGTTGACGTTCCGAAGATATACTGGCGGTAT
ACCAAACGACGAGTGATAACAATGCAGTGGATGGAAGGCATTCGACTTAA
CAGTGATAAACTCACACGAGAGCGCTCTGAAGAGCTTGTTCGAGCTATGG
TGCAGTGCTCCCTTCGACAAATGTTAGAAAATGGGTACTTCCACGCTGAT
ACACATCTTGGTAATCTTCTTGCAACACCGACTGGAAACCTGTGTTACCT
TGATTTTGGGATGATGTCCGAAGTGGAACCGGCACAACGGTATGGAATCA
TTGAAGCCGTTGTACATATGGTCAACAGGGATTTTGAAGCGCTTGCAAAT
CTTTACGTCCGACTTGGTTTCTTGCCACCGGAAACAGATTTAGAACCTAT
TATAGAAGCTTTGAACAAAGCTCTCCCAGATGTGTTGGGAGCGTCGGTTG
GAGAGTTGAATTTTAAGTCGGTCATTGACAAGCTAGGCTCCGTCATGTAT
CAGTATCCATTTCGCCTTCCGGCGTATTACACGGCAATTATACGGTGTTT
GGGAGTTTTGGAAGGGGTTGCAATTCAGGTAGACCCGAACTTTAAGATTT
TGAAAGAGTCATATCCGTATATAGCTTCTCGGCTTTTGACAGACCCTGCC
CCGGAATTGCAGGAAGCACTTCAATGCCTTCTCTTCGATAATGGTCATCC
ACGATGGAACAGGTTGGAAAGCTTGTTAGAATCGGCATCTACTGCTGGAG
ACTACGACGTCAGTGTCGCAGTGGAACAACTGTTCTCATTCTTGCTGTCT
CCGCGAGGGAAACTTGCAAGGTACAACTTGGCGGACGAAGTCACAGAAGA
GTTAGATGCGCTTGGTGTGGACCTCGCCAAGTACTATGTTGGCATTGCTG
CGCAGGCTGGTGCCGCCGCTGGACTTCGTTTGCCTATGTTTATGCGAGCC
CTCCCGCCACCAACGAGAACGCGCACAATGGAGAACGCTCGACACATGGC
AGACATTTTACGCAACAGCAAGGGATTCAATCCGTCGAAACTATCCCCGA
TTATGCGAAGGTTCCTGCGAGAGCCCGAAAGTCAAAGAATTGGCCTCGAG
GTTGCCATCTCTCTGGCAGAAAGAATAACTTCACGAGCTGTTCGTTTCGC
TTTTGGGCTGCCACAGGATGAGCCACGTAGTAGGCGATGA

protein sequence of Gcaud2855.t1

>Gcaud2855.t1 ID=Gcaud2855.t1|Name=Gcaud2855.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=730bp
MPTSPLTAITTRSLTTRVLRRATTLRDAHRKPSFVSRTQCTMQALSTSER
SNAVRARLERAEQLLQQAREQAKTGKATSSVPSSDSQPARVGGAVETMES
IEEQAARAAKSADEGPRYDPQSAVQYFKSRAFYVRRRQLEIAIPLTSFVS
RVTLDFQLGTEEQNRPKRAREFLKIVSSLGPAIIKGGQAVSSRPDLLPKE
YLDELQKLQDRLPPFDNGIAFRLIEEELGKPVDQIFESIDPIPVAAASIG
QVYSATLASTGERVAVKVQRPDCEQIIALDIYILRNLSGSLSNILKLTGR
DIDLQSIVEEFGKLIYEEIDYLSEARNAERFLELYGDLPGVDVPKIYWRY
TKRRVITMQWMEGIRLNSDKLTRERSEELVRAMVQCSLRQMLENGYFHAD
THLGNLLATPTGNLCYLDFGMMSEVEPAQRYGIIEAVVHMVNRDFEALAN
LYVRLGFLPPETDLEPIIEALNKALPDVLGASVGELNFKSVIDKLGSVMY
QYPFRLPAYYTAIIRCLGVLEGVAIQVDPNFKILKESYPYIASRLLTDPA
PELQEALQCLLFDNGHPRWNRLESLLESASTAGDYDVSVAVEQLFSFLLS
PRGKLARYNLADEVTEELDALGVDLAKYYVGIAAQAGAAAGLRLPMFMRA
LPPPTRTRTMENARHMADILRNSKGFNPSKLSPIMRRFLREPESQRIGLE
VAISLAERITSRAVRFAFGLPQDEPRSRR*

mRNA from alignment at NODE_7_length_102599_cov_4.541909:83413..85602+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2855.t1 ID=Gcaud2855.t1|Name=Gcaud2855.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2190bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:83413..85602+ (Gracilaria caudata M_176_S67 male)
ATGCCCACATCACCACTCACCGCTATCACCACTCGCTCGCTCACGACTCG
AGTTCTTCGTCGAGCCACAACATTGCGCGACGCGCACCGAAAGCCCTCCT
TTGTATCCCGTACACAATGTACAATGCAAGCGCTCTCAACAAGCGAGCGT
TCCAATGCTGTTCGCGCCCGTCTCGAACGCGCGGAGCAACTCCTGCAACA
AGCGCGTGAACAAGCCAAAACAGGCAAAGCGACATCCAGTGTGCCCTCTT
CAGACAGTCAGCCTGCCCGCGTTGGCGGCGCTGTGGAAACTATGGAAAGC
ATAGAGGAACAGGCCGCACGCGCTGCGAAGAGTGCTGATGAGGGTCCTCG
ATACGATCCGCAATCCGCTGTACAATACTTCAAGTCTCGCGCGTTTTATG
TTCGTAGGAGACAACTTGAAATCGCGATTCCACTTACTTCATTTGTATCT
CGCGTAACTCTAGATTTCCAACTTGGTACGGAAGAACAGAATCGTCCTAA
ACGAGCTAGGGAATTTTTGAAAATTGTGTCTTCACTTGGACCTGCTATAA
TCAAAGGTGGTCAAGCTGTTTCATCACGTCCTGATTTGCTTCCAAAAGAG
TACTTGGATGAGCTACAGAAACTCCAAGATCGACTACCTCCTTTTGATAA
TGGTATTGCATTTCGATTGATTGAAGAGGAGTTAGGTAAACCGGTTGACC
AAATTTTCGAATCTATTGACCCAATCCCTGTGGCTGCTGCATCCATTGGA
CAAGTATATTCCGCGACGTTAGCAAGCACCGGAGAACGAGTGGCTGTCAA
GGTGCAACGACCGGATTGTGAACAGATCATCGCACTGGACATTTACATAC
TGCGCAATCTCAGCGGATCCCTCAGCAACATTTTGAAACTGACGGGAAGA
GATATTGATTTGCAAAGCATTGTAGAGGAATTTGGAAAGCTCATCTACGA
AGAGATAGACTACCTTTCTGAAGCTCGTAATGCAGAAAGGTTTCTTGAAT
TGTATGGAGATTTGCCTGGTGTTGACGTTCCGAAGATATACTGGCGGTAT
ACCAAACGACGAGTGATAACAATGCAGTGGATGGAAGGCATTCGACTTAA
CAGTGATAAACTCACACGAGAGCGCTCTGAAGAGCTTGTTCGAGCTATGG
TGCAGTGCTCCCTTCGACAAATGTTAGAAAATGGGTACTTCCACGCTGAT
ACACATCTTGGTAATCTTCTTGCAACACCGACTGGAAACCTGTGTTACCT
TGATTTTGGGATGATGTCCGAAGTGGAACCGGCACAACGGTATGGAATCA
TTGAAGCCGTTGTACATATGGTCAACAGGGATTTTGAAGCGCTTGCAAAT
CTTTACGTCCGACTTGGTTTCTTGCCACCGGAAACAGATTTAGAACCTAT
TATAGAAGCTTTGAACAAAGCTCTCCCAGATGTGTTGGGAGCGTCGGTTG
GAGAGTTGAATTTTAAGTCGGTCATTGACAAGCTAGGCTCCGTCATGTAT
CAGTATCCATTTCGCCTTCCGGCGTATTACACGGCAATTATACGGTGTTT
GGGAGTTTTGGAAGGGGTTGCAATTCAGGTAGACCCGAACTTTAAGATTT
TGAAAGAGTCATATCCGTATATAGCTTCTCGGCTTTTGACAGACCCTGCC
CCGGAATTGCAGGAAGCACTTCAATGCCTTCTCTTCGATAATGGTCATCC
ACGATGGAACAGGTTGGAAAGCTTGTTAGAATCGGCATCTACTGCTGGAG
ACTACGACGTCAGTGTCGCAGTGGAACAACTGTTCTCATTCTTGCTGTCT
CCGCGAGGGAAACTTGCAAGGTACAACTTGGCGGACGAAGTCACAGAAGA
GTTAGATGCGCTTGGTGTGGACCTCGCCAAGTACTATGTTGGCATTGCTG
CGCAGGCTGGTGCCGCCGCTGGACTTCGTTTGCCTATGTTTATGCGAGCC
CTCCCGCCACCAACGAGAACGCGCACAATGGAGAACGCTCGACACATGGC
AGACATTTTACGCAACAGCAAGGGATTCAATCCGTCGAAACTATCCCCGA
TTATGCGAAGGTTCCTGCGAGAGCCCGAAAGTCAAAGAATTGGCCTCGAG
GTTGCCATCTCTCTGGCAGAAAGAATAACTTCACGAGCTGTTCGTTTCGC
TTTTGGGCTGCCACAGGATGAGCCACGTAGTAGGCGATGA

Coding sequence (CDS) from alignment at NODE_7_length_102599_cov_4.541909:83413..85602+

>Gcaud2855.t1 ID=Gcaud2855.t1|Name=Gcaud2855.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2190bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:83413..85602+ (Gracilaria caudata M_176_S67 male)
ATGCCCACATCACCACTCACCGCTATCACCACTCGCTCGCTCACGACTCG
AGTTCTTCGTCGAGCCACAACATTGCGCGACGCGCACCGAAAGCCCTCCT
TTGTATCCCGTACACAATGTACAATGCAAGCGCTCTCAACAAGCGAGCGT
TCCAATGCTGTTCGCGCCCGTCTCGAACGCGCGGAGCAACTCCTGCAACA
AGCGCGTGAACAAGCCAAAACAGGCAAAGCGACATCCAGTGTGCCCTCTT
CAGACAGTCAGCCTGCCCGCGTTGGCGGCGCTGTGGAAACTATGGAAAGC
ATAGAGGAACAGGCCGCACGCGCTGCGAAGAGTGCTGATGAGGGTCCTCG
ATACGATCCGCAATCCGCTGTACAATACTTCAAGTCTCGCGCGTTTTATG
TTCGTAGGAGACAACTTGAAATCGCGATTCCACTTACTTCATTTGTATCT
CGCGTAACTCTAGATTTCCAACTTGGTACGGAAGAACAGAATCGTCCTAA
ACGAGCTAGGGAATTTTTGAAAATTGTGTCTTCACTTGGACCTGCTATAA
TCAAAGGTGGTCAAGCTGTTTCATCACGTCCTGATTTGCTTCCAAAAGAG
TACTTGGATGAGCTACAGAAACTCCAAGATCGACTACCTCCTTTTGATAA
TGGTATTGCATTTCGATTGATTGAAGAGGAGTTAGGTAAACCGGTTGACC
AAATTTTCGAATCTATTGACCCAATCCCTGTGGCTGCTGCATCCATTGGA
CAAGTATATTCCGCGACGTTAGCAAGCACCGGAGAACGAGTGGCTGTCAA
GGTGCAACGACCGGATTGTGAACAGATCATCGCACTGGACATTTACATAC
TGCGCAATCTCAGCGGATCCCTCAGCAACATTTTGAAACTGACGGGAAGA
GATATTGATTTGCAAAGCATTGTAGAGGAATTTGGAAAGCTCATCTACGA
AGAGATAGACTACCTTTCTGAAGCTCGTAATGCAGAAAGGTTTCTTGAAT
TGTATGGAGATTTGCCTGGTGTTGACGTTCCGAAGATATACTGGCGGTAT
ACCAAACGACGAGTGATAACAATGCAGTGGATGGAAGGCATTCGACTTAA
CAGTGATAAACTCACACGAGAGCGCTCTGAAGAGCTTGTTCGAGCTATGG
TGCAGTGCTCCCTTCGACAAATGTTAGAAAATGGGTACTTCCACGCTGAT
ACACATCTTGGTAATCTTCTTGCAACACCGACTGGAAACCTGTGTTACCT
TGATTTTGGGATGATGTCCGAAGTGGAACCGGCACAACGGTATGGAATCA
TTGAAGCCGTTGTACATATGGTCAACAGGGATTTTGAAGCGCTTGCAAAT
CTTTACGTCCGACTTGGTTTCTTGCCACCGGAAACAGATTTAGAACCTAT
TATAGAAGCTTTGAACAAAGCTCTCCCAGATGTGTTGGGAGCGTCGGTTG
GAGAGTTGAATTTTAAGTCGGTCATTGACAAGCTAGGCTCCGTCATGTAT
CAGTATCCATTTCGCCTTCCGGCGTATTACACGGCAATTATACGGTGTTT
GGGAGTTTTGGAAGGGGTTGCAATTCAGGTAGACCCGAACTTTAAGATTT
TGAAAGAGTCATATCCGTATATAGCTTCTCGGCTTTTGACAGACCCTGCC
CCGGAATTGCAGGAAGCACTTCAATGCCTTCTCTTCGATAATGGTCATCC
ACGATGGAACAGGTTGGAAAGCTTGTTAGAATCGGCATCTACTGCTGGAG
ACTACGACGTCAGTGTCGCAGTGGAACAACTGTTCTCATTCTTGCTGTCT
CCGCGAGGGAAACTTGCAAGGTACAACTTGGCGGACGAAGTCACAGAAGA
GTTAGATGCGCTTGGTGTGGACCTCGCCAAGTACTATGTTGGCATTGCTG
CGCAGGCTGGTGCCGCCGCTGGACTTCGTTTGCCTATGTTTATGCGAGCC
CTCCCGCCACCAACGAGAACGCGCACAATGGAGAACGCTCGACACATGGC
AGACATTTTACGCAACAGCAAGGGATTCAATCCGTCGAAACTATCCCCGA
TTATGCGAAGGTTCCTGCGAGAGCCCGAAAGTCAAAGAATTGGCCTCGAG
GTTGCCATCTCTCTGGCAGAAAGAATAACTTCACGAGCTGTTCGTTTCGC
TTTTGGGCTGCCACAGGATGAGCCACGTAGTAGGCGATGA