Gcaud2853.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2853.t1
Unique Name	Gcaud2853.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	418

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_7_length_102599_cov_4.541909	contig	NODE_7_length_102599_cov_4.541909:80515..81768 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704927.1
PFAMs	Aldo_ket_red
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K09338
Evalue	1.33e-122
EggNOG OGs	COG0667@1\|root,KOG1575@2759\|Eukaryota
Description	oxidoreductase activity
COG category	C
BRITE	ko00000,ko03000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2853	Gcaud2853	Gracilaria caudata M_176_S67 male	gene	NODE_7_length_102599_cov_4.541909 80515..81768 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2853.t1.stop1	Gcaud2853.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_7_length_102599_cov_4.541909 80515..80517 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2853.t1.CDS1	Gcaud2853.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_7_length_102599_cov_4.541909 80515..81768 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2853.t1.exon1	Gcaud2853.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_7_length_102599_cov_4.541909 80515..81768 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2853.t1.start1	Gcaud2853.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_7_length_102599_cov_4.541909 81766..81768 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2853.t1	Gcaud2853.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_7_length_102599_cov_4.541909 80515..81768 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_7_length_102599_cov_4.541909:80515..81768-
coding sequence from alignment at NODE_7_length_102599_cov_4.541909:80515..81768-

mRNA sequence

>Gcaud2853.t1 ID=Gcaud2853.t1|Name=Gcaud2853.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=418bp
MFKAHYYISPMDTLLGFATPSHAGLRKPVRAPAAGVAPATCPRKPVTMVA
ETKAPLTDYKLDIRPVGGAGLVMTEVTLGTMTWGHQNNEQDAHDQLDYAF
EKGVVGIDGAETYPVPPRQETYGDTERMIGSWIKKRGGSSFREKLVIFSK
VAGGNIGGRTLPWIRGDGRKVDKKNIRIAVEGILQRLGTDYIDLLQIHWP
DRYVPLFGAGAYDVTKEVHSVPFEEQIAAMDELIKEGMIRNYGLSNETAW
GVSQFDAVARANGYARPVSIQNSYSLIYRDFEGHLAEVCAPRNANVGLLA
YSPLAGGALTGKYLEPPIPDNARFALYPGYMKRFQSSLAAEAIREYKRVA
DEAGLTLTQLSLAWCRSRWFVASTIIGATNLEQLEENLDAFSVDLDPAVI
EAVEKVYTRFRDPSKTS*

spliced messenger RNA

>Gcaud2853.t1 ID=Gcaud2853.t1|Name=Gcaud2853.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1254bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:80515..81768- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCAAGGCGCATTATTACATATCTCCGATGGACACGCTCCTAGGATT
TGCCACCCCATCCCATGCTGGTCTTCGCAAACCAGTCCGCGCTCCGGCTG
CGGGCGTAGCCCCTGCTACTTGTCCAAGGAAGCCCGTAACAATGGTGGCA
GAAACAAAAGCGCCGCTCACCGACTACAAACTTGACATACGTCCCGTCGG
AGGCGCAGGCCTGGTCATGACCGAAGTCACGCTTGGAACGATGACATGGG
GGCATCAGAACAATGAGCAAGACGCTCATGATCAGCTCGACTACGCTTTT
GAAAAGGGTGTAGTAGGCATCGACGGTGCAGAGACCTATCCGGTGCCACC
ACGCCAGGAAACATACGGCGACACTGAGCGTATGATTGGGTCTTGGATCA
AGAAACGCGGCGGTTCTTCGTTTAGAGAGAAGCTAGTAATATTCTCAAAA
GTCGCTGGTGGTAACATTGGAGGAAGAACGCTGCCATGGATCCGGGGAGA
TGGTAGGAAAGTGGACAAGAAAAACATTAGGATTGCAGTGGAGGGCATCC
TGCAACGGCTTGGTACCGACTATATAGATCTTCTGCAAATCCACTGGCCT
GATAGGTATGTACCGTTGTTTGGTGCAGGTGCATATGATGTTACAAAAGA
AGTACATTCCGTGCCCTTCGAAGAACAAATTGCTGCCATGGATGAACTAA
TTAAGGAGGGTATGATTCGAAACTACGGACTAAGCAACGAAACCGCTTGG
GGCGTCTCGCAGTTTGACGCAGTGGCCCGGGCAAATGGGTATGCAAGACC
TGTATCTATTCAAAACTCGTATAGTTTGATATATCGTGATTTCGAAGGGC
ACTTGGCGGAGGTTTGTGCGCCACGAAATGCAAATGTCGGCCTTCTTGCC
TACAGTCCTCTTGCTGGAGGTGCGCTCACGGGAAAATACCTTGAGCCACC
GATTCCGGACAACGCAAGGTTCGCATTATATCCAGGTTACATGAAGCGCT
TTCAAAGTAGTCTGGCCGCAGAAGCGATTCGTGAGTACAAACGAGTTGCA
GATGAAGCCGGTCTGACTCTCACGCAGCTGTCTCTTGCGTGGTGTAGGAG
CAGGTGGTTTGTTGCGAGTACTATCATCGGTGCGACCAATCTTGAGCAAC
TGGAAGAAAACCTGGACGCCTTTTCCGTAGATCTTGACCCAGCGGTCATT
GAAGCCGTGGAGAAGGTCTACACGCGCTTTCGAGATCCTTCTAAGACGTC
GTGA

protein sequence of Gcaud2853.t1

>Gcaud2853.t1 ID=Gcaud2853.t1|Name=Gcaud2853.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=418bp
MFKAHYYISPMDTLLGFATPSHAGLRKPVRAPAAGVAPATCPRKPVTMVA
ETKAPLTDYKLDIRPVGGAGLVMTEVTLGTMTWGHQNNEQDAHDQLDYAF
EKGVVGIDGAETYPVPPRQETYGDTERMIGSWIKKRGGSSFREKLVIFSK
VAGGNIGGRTLPWIRGDGRKVDKKNIRIAVEGILQRLGTDYIDLLQIHWP
DRYVPLFGAGAYDVTKEVHSVPFEEQIAAMDELIKEGMIRNYGLSNETAW
GVSQFDAVARANGYARPVSIQNSYSLIYRDFEGHLAEVCAPRNANVGLLA
YSPLAGGALTGKYLEPPIPDNARFALYPGYMKRFQSSLAAEAIREYKRVA
DEAGLTLTQLSLAWCRSRWFVASTIIGATNLEQLEENLDAFSVDLDPAVI
EAVEKVYTRFRDPSKTS*

mRNA from alignment at NODE_7_length_102599_cov_4.541909:80515..81768-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2853.t1 ID=Gcaud2853.t1|Name=Gcaud2853.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1254bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:80515..81768- (Gracilaria caudata M_176_S67 male)
ATGTTCAAGGCGCATTATTACATATCTCCGATGGACACGCTCCTAGGATT
TGCCACCCCATCCCATGCTGGTCTTCGCAAACCAGTCCGCGCTCCGGCTG
CGGGCGTAGCCCCTGCTACTTGTCCAAGGAAGCCCGTAACAATGGTGGCA
GAAACAAAAGCGCCGCTCACCGACTACAAACTTGACATACGTCCCGTCGG
AGGCGCAGGCCTGGTCATGACCGAAGTCACGCTTGGAACGATGACATGGG
GGCATCAGAACAATGAGCAAGACGCTCATGATCAGCTCGACTACGCTTTT
GAAAAGGGTGTAGTAGGCATCGACGGTGCAGAGACCTATCCGGTGCCACC
ACGCCAGGAAACATACGGCGACACTGAGCGTATGATTGGGTCTTGGATCA
AGAAACGCGGCGGTTCTTCGTTTAGAGAGAAGCTAGTAATATTCTCAAAA
GTCGCTGGTGGTAACATTGGAGGAAGAACGCTGCCATGGATCCGGGGAGA
TGGTAGGAAAGTGGACAAGAAAAACATTAGGATTGCAGTGGAGGGCATCC
TGCAACGGCTTGGTACCGACTATATAGATCTTCTGCAAATCCACTGGCCT
GATAGGTATGTACCGTTGTTTGGTGCAGGTGCATATGATGTTACAAAAGA
AGTACATTCCGTGCCCTTCGAAGAACAAATTGCTGCCATGGATGAACTAA
TTAAGGAGGGTATGATTCGAAACTACGGACTAAGCAACGAAACCGCTTGG
GGCGTCTCGCAGTTTGACGCAGTGGCCCGGGCAAATGGGTATGCAAGACC
TGTATCTATTCAAAACTCGTATAGTTTGATATATCGTGATTTCGAAGGGC
ACTTGGCGGAGGTTTGTGCGCCACGAAATGCAAATGTCGGCCTTCTTGCC
TACAGTCCTCTTGCTGGAGGTGCGCTCACGGGAAAATACCTTGAGCCACC
GATTCCGGACAACGCAAGGTTCGCATTATATCCAGGTTACATGAAGCGCT
TTCAAAGTAGTCTGGCCGCAGAAGCGATTCGTGAGTACAAACGAGTTGCA
GATGAAGCCGGTCTGACTCTCACGCAGCTGTCTCTTGCGTGGTGTAGGAG
CAGGTGGTTTGTTGCGAGTACTATCATCGGTGCGACCAATCTTGAGCAAC
TGGAAGAAAACCTGGACGCCTTTTCCGTAGATCTTGACCCAGCGGTCATT
GAAGCCGTGGAGAAGGTCTACACGCGCTTTCGAGATCCTTCTAAGACGTC
GTGA

Coding sequence (CDS) from alignment at NODE_7_length_102599_cov_4.541909:80515..81768-

>Gcaud2853.t1 ID=Gcaud2853.t1|Name=Gcaud2853.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1254bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:80515..81768- (Gracilaria caudata M_176_S67 male)
ATGTTCAAGGCGCATTATTACATATCTCCGATGGACACGCTCCTAGGATT
TGCCACCCCATCCCATGCTGGTCTTCGCAAACCAGTCCGCGCTCCGGCTG
CGGGCGTAGCCCCTGCTACTTGTCCAAGGAAGCCCGTAACAATGGTGGCA
GAAACAAAAGCGCCGCTCACCGACTACAAACTTGACATACGTCCCGTCGG
AGGCGCAGGCCTGGTCATGACCGAAGTCACGCTTGGAACGATGACATGGG
GGCATCAGAACAATGAGCAAGACGCTCATGATCAGCTCGACTACGCTTTT
GAAAAGGGTGTAGTAGGCATCGACGGTGCAGAGACCTATCCGGTGCCACC
ACGCCAGGAAACATACGGCGACACTGAGCGTATGATTGGGTCTTGGATCA
AGAAACGCGGCGGTTCTTCGTTTAGAGAGAAGCTAGTAATATTCTCAAAA
GTCGCTGGTGGTAACATTGGAGGAAGAACGCTGCCATGGATCCGGGGAGA
TGGTAGGAAAGTGGACAAGAAAAACATTAGGATTGCAGTGGAGGGCATCC
TGCAACGGCTTGGTACCGACTATATAGATCTTCTGCAAATCCACTGGCCT
GATAGGTATGTACCGTTGTTTGGTGCAGGTGCATATGATGTTACAAAAGA
AGTACATTCCGTGCCCTTCGAAGAACAAATTGCTGCCATGGATGAACTAA
TTAAGGAGGGTATGATTCGAAACTACGGACTAAGCAACGAAACCGCTTGG
GGCGTCTCGCAGTTTGACGCAGTGGCCCGGGCAAATGGGTATGCAAGACC
TGTATCTATTCAAAACTCGTATAGTTTGATATATCGTGATTTCGAAGGGC
ACTTGGCGGAGGTTTGTGCGCCACGAAATGCAAATGTCGGCCTTCTTGCC
TACAGTCCTCTTGCTGGAGGTGCGCTCACGGGAAAATACCTTGAGCCACC
GATTCCGGACAACGCAAGGTTCGCATTATATCCAGGTTACATGAAGCGCT
TTCAAAGTAGTCTGGCCGCAGAAGCGATTCGTGAGTACAAACGAGTTGCA
GATGAAGCCGGTCTGACTCTCACGCAGCTGTCTCTTGCGTGGTGTAGGAG
CAGGTGGTTTGTTGCGAGTACTATCATCGGTGCGACCAATCTTGAGCAAC
TGGAAGAAAACCTGGACGCCTTTTCCGTAGATCTTGACCCAGCGGTCATT
GAAGCCGTGGAGAAGGTCTACACGCGCTTTCGAGATCCTTCTAAGACGTC
GTGA