Gcaud2848.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2848.t1
Unique NameGcaud2848.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length401
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_7_length_102599_cov_4.541909contigNODE_7_length_102599_cov_4.541909:61304..62506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7217.FBpp0118725
Preferred nameMOCS3
PFAMsRhodanese,ThiF
Max annot lvl33208|Metazoa
KEGG rclassRC00043
KEGG koko:K11996
KEGG ReactionR07459,R07461
KEGG Pathwayko04122,map04122
GOsGO:0002097,GO:0002098,GO:0002143,GO:0003674,GO:0003824,GO:0004792,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006725,GO:0006732,GO:0006753,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008641,GO:0009058,GO:0009108,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0016782,GO:0016783,GO:0016874,GO:0016877,GO:0018130,GO:0018192,GO:0018193,GO:0018198,GO:0018307,GO:0019008,GO:0019538,GO:0019637,GO:0019693,GO:0019720,GO:0032324,GO:0032446,GO:0032447,GO:0032991,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0042278,GO:0042292,GO:0043170,GO:0043412,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046039,GO:0046128,GO:0046483,GO:0051186,GO:0051188,GO:0051189,GO:0055086,GO:0070647,GO:0071566,GO:0071704,GO:0072521,GO:0090304,GO:0090407,GO:0098822,GO:1901068,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657
Evalue1.85e-105
EggNOG OGsCOG0476@1|root,KOG2017@2759|Eukaryota,38E2S@33154|Opisthokonta,3BETE@33208|Metazoa,3D0E8@33213|Bilateria,41XV6@6656|Arthropoda,3SIA1@50557|Insecta,44YPF@7147|Diptera,45T1V@7214|Drosophilidae
EC2.7.7.80,2.8.1.11
DescriptionPlays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers URM1 and MOCS2A. Its N-terminus first activates URM1 and MOCS2A as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 and MOCS2A to form thiocarboxylation (-COSH) of their C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1 and MOCS2A. Subsequently, a transient disulfide bond is formed. Does not use thiosulfate as sulfur donor
COG categoryH
BRITEko00000,ko00001,ko01000,ko03016,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2848Gcaud2848Gracilaria caudata M_176_S67 malegeneNODE_7_length_102599_cov_4.541909 61304..62506 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2848.t1.stop1Gcaud2848.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_7_length_102599_cov_4.541909 61304..61306 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2848.t1.CDS1Gcaud2848.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_7_length_102599_cov_4.541909 61304..62506 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2848.t1.exon1Gcaud2848.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_7_length_102599_cov_4.541909 61304..62506 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2848.t1.start1Gcaud2848.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_7_length_102599_cov_4.541909 62504..62506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2848.t1Gcaud2848.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_7_length_102599_cov_4.541909 61304..62506 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2848.t1 ID=Gcaud2848.t1|Name=Gcaud2848.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=401bp
MNDSNNKHDSLSSREIERYSRQLLLTQFGPGGQRKLKNSRVLVIGLGGLG
CPAVLYLAGAGVGTLGLVDRPHDVVEASNLHRQIAHSEARVGMNKVDSTE
IAISTLNSDVAIEKHDSFVPENAVLLASSYDLVLDCTDNVASRYLVSDAC
AKCRTPLLSGSAIGTDGQLTMYCKTEESPCYRCIFPSPPPPACVGSCDSA
GVLGPVPGIIGNLQALEAVKFLSCMKQTDDLDRRMLLFDGSLCGFRTIKL
RSRVKNCAMCGVSPGVNVAHFDYELFANGGMVLGMLVPDIPDQYRISTKD
LAKLRKAPSTYRLIDVRPRHEFELCHLDEAENWPLAGLEPSRGISDIAVD
KTRIIFLCRRGNSSRKALRLFLDAGATNVCDVIGGLQAWHHNVDKGFPLY
*
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spliced messenger RNA

>Gcaud2848.t1 ID=Gcaud2848.t1|Name=Gcaud2848.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:61304..62506- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGATTCTAATAATAAACACGATTCTCTTAGTAGTCGCGAAATTGA
GCGGTACAGCCGGCAGCTTTTGCTCACGCAGTTTGGACCTGGTGGTCAAA
GAAAGTTGAAGAATTCTCGCGTTCTAGTTATTGGGCTGGGTGGCTTGGGT
TGTCCAGCGGTCCTCTACCTTGCTGGTGCTGGAGTTGGAACGCTTGGTCT
TGTGGATCGGCCGCATGATGTCGTTGAAGCGAGTAATCTGCATCGCCAAA
TCGCACATTCCGAGGCCAGAGTTGGAATGAATAAGGTTGACTCGACCGAG
ATCGCAATCAGCACGCTGAACTCCGACGTCGCAATTGAAAAACATGATAG
CTTTGTTCCTGAAAACGCCGTTCTCTTGGCATCGTCGTACGATTTGGTCT
TGGACTGTACAGACAACGTGGCATCTCGGTATCTTGTCAGTGATGCATGT
GCGAAATGCCGAACACCATTGCTCTCTGGATCTGCAATTGGCACTGACGG
ACAGTTAACTATGTATTGCAAAACTGAGGAATCTCCATGTTACAGATGCA
TTTTTCCCAGCCCACCTCCTCCGGCTTGTGTTGGCAGCTGTGATTCTGCT
GGCGTGCTTGGTCCTGTTCCTGGTATCATTGGCAATCTGCAGGCACTGGA
AGCAGTCAAGTTCTTAAGCTGCATGAAGCAAACAGACGATTTGGATCGCA
GAATGTTGTTATTCGATGGTTCTCTTTGTGGGTTTAGAACCATAAAGCTA
CGGTCTCGCGTAAAGAACTGTGCGATGTGTGGTGTATCGCCTGGGGTAAA
TGTCGCACATTTCGATTATGAGCTATTCGCTAATGGCGGCATGGTATTAG
GGATGTTAGTACCTGATATACCAGATCAATATCGTATATCAACCAAGGAC
TTGGCGAAGCTGAGGAAGGCGCCCTCCACGTACAGATTGATTGATGTCCG
TCCACGTCATGAGTTTGAATTATGCCATCTCGATGAGGCAGAGAACTGGC
CCTTAGCTGGATTAGAGCCGTCTCGAGGCATTAGTGACATAGCTGTCGAC
AAGACACGAATTATATTTCTTTGTCGGAGAGGTAATTCAAGTCGGAAGGC
GTTGAGGTTATTTCTTGATGCGGGAGCCACAAATGTCTGCGATGTGATCG
GTGGACTTCAAGCATGGCATCATAACGTTGACAAAGGATTTCCGCTCTAT
TGA
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protein sequence of Gcaud2848.t1

>Gcaud2848.t1 ID=Gcaud2848.t1|Name=Gcaud2848.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=401bp
MNDSNNKHDSLSSREIERYSRQLLLTQFGPGGQRKLKNSRVLVIGLGGLG
CPAVLYLAGAGVGTLGLVDRPHDVVEASNLHRQIAHSEARVGMNKVDSTE
IAISTLNSDVAIEKHDSFVPENAVLLASSYDLVLDCTDNVASRYLVSDAC
AKCRTPLLSGSAIGTDGQLTMYCKTEESPCYRCIFPSPPPPACVGSCDSA
GVLGPVPGIIGNLQALEAVKFLSCMKQTDDLDRRMLLFDGSLCGFRTIKL
RSRVKNCAMCGVSPGVNVAHFDYELFANGGMVLGMLVPDIPDQYRISTKD
LAKLRKAPSTYRLIDVRPRHEFELCHLDEAENWPLAGLEPSRGISDIAVD
KTRIIFLCRRGNSSRKALRLFLDAGATNVCDVIGGLQAWHHNVDKGFPLY
*
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mRNA from alignment at NODE_7_length_102599_cov_4.541909:61304..62506-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2848.t1 ID=Gcaud2848.t1|Name=Gcaud2848.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:61304..62506- (Gracilaria caudata M_176_S67 male)
ATGAACGATTCTAATAATAAACACGATTCTCTTAGTAGTCGCGAAATTGA
GCGGTACAGCCGGCAGCTTTTGCTCACGCAGTTTGGACCTGGTGGTCAAA
GAAAGTTGAAGAATTCTCGCGTTCTAGTTATTGGGCTGGGTGGCTTGGGT
TGTCCAGCGGTCCTCTACCTTGCTGGTGCTGGAGTTGGAACGCTTGGTCT
TGTGGATCGGCCGCATGATGTCGTTGAAGCGAGTAATCTGCATCGCCAAA
TCGCACATTCCGAGGCCAGAGTTGGAATGAATAAGGTTGACTCGACCGAG
ATCGCAATCAGCACGCTGAACTCCGACGTCGCAATTGAAAAACATGATAG
CTTTGTTCCTGAAAACGCCGTTCTCTTGGCATCGTCGTACGATTTGGTCT
TGGACTGTACAGACAACGTGGCATCTCGGTATCTTGTCAGTGATGCATGT
GCGAAATGCCGAACACCATTGCTCTCTGGATCTGCAATTGGCACTGACGG
ACAGTTAACTATGTATTGCAAAACTGAGGAATCTCCATGTTACAGATGCA
TTTTTCCCAGCCCACCTCCTCCGGCTTGTGTTGGCAGCTGTGATTCTGCT
GGCGTGCTTGGTCCTGTTCCTGGTATCATTGGCAATCTGCAGGCACTGGA
AGCAGTCAAGTTCTTAAGCTGCATGAAGCAAACAGACGATTTGGATCGCA
GAATGTTGTTATTCGATGGTTCTCTTTGTGGGTTTAGAACCATAAAGCTA
CGGTCTCGCGTAAAGAACTGTGCGATGTGTGGTGTATCGCCTGGGGTAAA
TGTCGCACATTTCGATTATGAGCTATTCGCTAATGGCGGCATGGTATTAG
GGATGTTAGTACCTGATATACCAGATCAATATCGTATATCAACCAAGGAC
TTGGCGAAGCTGAGGAAGGCGCCCTCCACGTACAGATTGATTGATGTCCG
TCCACGTCATGAGTTTGAATTATGCCATCTCGATGAGGCAGAGAACTGGC
CCTTAGCTGGATTAGAGCCGTCTCGAGGCATTAGTGACATAGCTGTCGAC
AAGACACGAATTATATTTCTTTGTCGGAGAGGTAATTCAAGTCGGAAGGC
GTTGAGGTTATTTCTTGATGCGGGAGCCACAAATGTCTGCGATGTGATCG
GTGGACTTCAAGCATGGCATCATAACGTTGACAAAGGATTTCCGCTCTAT
TGA
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Coding sequence (CDS) from alignment at NODE_7_length_102599_cov_4.541909:61304..62506-

>Gcaud2848.t1 ID=Gcaud2848.t1|Name=Gcaud2848.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1203bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:61304..62506- (Gracilaria caudata M_176_S67 male)
ATGAACGATTCTAATAATAAACACGATTCTCTTAGTAGTCGCGAAATTGA
GCGGTACAGCCGGCAGCTTTTGCTCACGCAGTTTGGACCTGGTGGTCAAA
GAAAGTTGAAGAATTCTCGCGTTCTAGTTATTGGGCTGGGTGGCTTGGGT
TGTCCAGCGGTCCTCTACCTTGCTGGTGCTGGAGTTGGAACGCTTGGTCT
TGTGGATCGGCCGCATGATGTCGTTGAAGCGAGTAATCTGCATCGCCAAA
TCGCACATTCCGAGGCCAGAGTTGGAATGAATAAGGTTGACTCGACCGAG
ATCGCAATCAGCACGCTGAACTCCGACGTCGCAATTGAAAAACATGATAG
CTTTGTTCCTGAAAACGCCGTTCTCTTGGCATCGTCGTACGATTTGGTCT
TGGACTGTACAGACAACGTGGCATCTCGGTATCTTGTCAGTGATGCATGT
GCGAAATGCCGAACACCATTGCTCTCTGGATCTGCAATTGGCACTGACGG
ACAGTTAACTATGTATTGCAAAACTGAGGAATCTCCATGTTACAGATGCA
TTTTTCCCAGCCCACCTCCTCCGGCTTGTGTTGGCAGCTGTGATTCTGCT
GGCGTGCTTGGTCCTGTTCCTGGTATCATTGGCAATCTGCAGGCACTGGA
AGCAGTCAAGTTCTTAAGCTGCATGAAGCAAACAGACGATTTGGATCGCA
GAATGTTGTTATTCGATGGTTCTCTTTGTGGGTTTAGAACCATAAAGCTA
CGGTCTCGCGTAAAGAACTGTGCGATGTGTGGTGTATCGCCTGGGGTAAA
TGTCGCACATTTCGATTATGAGCTATTCGCTAATGGCGGCATGGTATTAG
GGATGTTAGTACCTGATATACCAGATCAATATCGTATATCAACCAAGGAC
TTGGCGAAGCTGAGGAAGGCGCCCTCCACGTACAGATTGATTGATGTCCG
TCCACGTCATGAGTTTGAATTATGCCATCTCGATGAGGCAGAGAACTGGC
CCTTAGCTGGATTAGAGCCGTCTCGAGGCATTAGTGACATAGCTGTCGAC
AAGACACGAATTATATTTCTTTGTCGGAGAGGTAATTCAAGTCGGAAGGC
GTTGAGGTTATTTCTTGATGCGGGAGCCACAAATGTCTGCGATGTGATCG
GTGGACTTCAAGCATGGCATCATAACGTTGACAAAGGATTTCCGCTCTAT
TGA
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