Gcaud2846.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2846.t1
Unique NameGcaud2846.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length376
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_7_length_102599_cov_4.541909contigNODE_7_length_102599_cov_4.541909:54657..55784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706114.1
PFAMsCTP_transf_1
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00055,RC00523
KEGG koko:K00981,ko:K14163
KEGG ReactionR01799,R03661,R05578
KEGG Pathwayko00564,ko00860,ko00970,ko01100,ko01110,ko01120,ko04070,map00564,map00860,map00970,map01100,map01110,map01120,map04070
KEGG ModuleM00093,M00121,M00359
GOsGO:0003674,GO:0003824,GO:0004605,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009165,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009941,GO:0009987,GO:0016020,GO:0016024,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0034641,GO:0034654,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046341,GO:0046471,GO:0046474,GO:0046483,GO:0046486,GO:0055035,GO:0055086,GO:0070567,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue6.2e-104
EggNOG OGsCOG0575@1|root,KOG1440@2759|Eukaryota
EC2.7.7.41,6.1.1.15,6.1.1.17
Descriptionphosphatidate cytidylyltransferase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2846Gcaud2846Gracilaria caudata M_176_S67 malegeneNODE_7_length_102599_cov_4.541909 54657..55784 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2846.t1.stop1Gcaud2846.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_7_length_102599_cov_4.541909 54657..54659 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2846.t1.CDS1Gcaud2846.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_7_length_102599_cov_4.541909 54657..55784 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2846.t1.exon1Gcaud2846.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_7_length_102599_cov_4.541909 54657..55784 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2846.t1.start1Gcaud2846.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_7_length_102599_cov_4.541909 55782..55784 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2846.t1Gcaud2846.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_7_length_102599_cov_4.541909 54657..55784 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2846.t1 ID=Gcaud2846.t1|Name=Gcaud2846.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=376bp
MSPAFRTTLRLSPAFAPALLLPACRAQSACPRTSPSLRPLRALAASAKLS
APKNDLAHHPDDPAHMAQQRASRHIIPTFKVQRRIAVGFVMGAVVIAFVF
SGRWVFAIGMLAISLTGLYEYYRMVAAKGHLPAYKMGLCVTAATLLSSAC
SSTLADVVFPVGGTMICIYLLFRRRKIATIADISTTFMGLFYAGYLPSYW
IRLHEYNGALTKNVVAGVISFVWPTASWFQPTITVGSLIVFWTWLSGASA
DIGAFFVGRAFGKTRFSDISPKKTIEGAVAGFICSASVSVLGAYLLQWPL
WWATGAVYGVTVGILGLCGDLFESCFKRDVGWKDSGSLFPGHGGMLDRAD
SYVLVAPLVYFFATLVLPFITRIVR*
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spliced messenger RNA

>Gcaud2846.t1 ID=Gcaud2846.t1|Name=Gcaud2846.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1128bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:54657..55784- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCAGCTTTCCGTACCACGCTCCGCCTCTCCCCAGCCTTCGCTCC
AGCCCTGTTGCTTCCCGCCTGCCGTGCTCAGTCTGCTTGCCCCCGCACCT
CGCCCTCCTTACGCCCGCTGCGCGCGCTGGCTGCCTCCGCAAAGCTCTCC
GCGCCTAAGAATGATCTGGCCCACCATCCCGACGATCCCGCGCACATGGC
GCAGCAACGCGCGTCGCGCCACATCATTCCCACCTTCAAGGTGCAGCGTC
GTATTGCGGTCGGCTTCGTCATGGGCGCCGTCGTCATAGCGTTTGTGTTT
TCCGGTCGCTGGGTGTTTGCCATAGGCATGTTGGCAATCAGTCTCACCGG
TCTGTATGAGTACTATCGCATGGTGGCGGCCAAGGGACATCTGCCTGCGT
ACAAAATGGGATTGTGCGTCACCGCAGCTACTCTGCTCTCCAGCGCGTGC
TCGTCAACGCTGGCCGACGTGGTTTTCCCAGTCGGCGGTACCATGATATG
CATTTACTTGTTGTTTAGACGCCGAAAGATCGCCACAATCGCCGACATTA
GCACCACCTTCATGGGGTTGTTCTACGCCGGCTATCTGCCCAGCTACTGG
ATTCGCTTGCACGAATATAACGGCGCGTTGACGAAAAACGTTGTGGCGGG
CGTCATCTCGTTTGTATGGCCTACTGCGTCGTGGTTTCAACCCACCATCA
CCGTGGGGTCTCTCATTGTGTTTTGGACGTGGCTGTCTGGCGCCAGTGCC
GATATTGGCGCCTTTTTTGTGGGCAGAGCGTTCGGCAAGACGCGTTTTAG
CGATATTTCCCCGAAGAAGACCATTGAGGGAGCCGTGGCGGGATTCATAT
GTTCGGCAAGCGTATCCGTCTTGGGCGCATACCTGCTGCAGTGGCCGCTA
TGGTGGGCCACGGGAGCTGTATATGGCGTCACCGTGGGCATTCTGGGGCT
CTGCGGTGATCTGTTTGAAAGCTGTTTCAAGCGTGATGTGGGATGGAAGG
ACAGTGGATCACTGTTCCCTGGGCATGGTGGCATGCTCGATCGCGCAGAT
AGTTATGTGCTGGTGGCACCTCTTGTTTATTTCTTTGCAACTTTGGTGCT
GCCTTTCATCACGCGCATTGTTCGGTAG
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protein sequence of Gcaud2846.t1

>Gcaud2846.t1 ID=Gcaud2846.t1|Name=Gcaud2846.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=376bp
MSPAFRTTLRLSPAFAPALLLPACRAQSACPRTSPSLRPLRALAASAKLS
APKNDLAHHPDDPAHMAQQRASRHIIPTFKVQRRIAVGFVMGAVVIAFVF
SGRWVFAIGMLAISLTGLYEYYRMVAAKGHLPAYKMGLCVTAATLLSSAC
SSTLADVVFPVGGTMICIYLLFRRRKIATIADISTTFMGLFYAGYLPSYW
IRLHEYNGALTKNVVAGVISFVWPTASWFQPTITVGSLIVFWTWLSGASA
DIGAFFVGRAFGKTRFSDISPKKTIEGAVAGFICSASVSVLGAYLLQWPL
WWATGAVYGVTVGILGLCGDLFESCFKRDVGWKDSGSLFPGHGGMLDRAD
SYVLVAPLVYFFATLVLPFITRIVR*
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mRNA from alignment at NODE_7_length_102599_cov_4.541909:54657..55784-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2846.t1 ID=Gcaud2846.t1|Name=Gcaud2846.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1128bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:54657..55784- (Gracilaria caudata M_176_S67 male)
ATGTCGCCAGCTTTCCGTACCACGCTCCGCCTCTCCCCAGCCTTCGCTCC
AGCCCTGTTGCTTCCCGCCTGCCGTGCTCAGTCTGCTTGCCCCCGCACCT
CGCCCTCCTTACGCCCGCTGCGCGCGCTGGCTGCCTCCGCAAAGCTCTCC
GCGCCTAAGAATGATCTGGCCCACCATCCCGACGATCCCGCGCACATGGC
GCAGCAACGCGCGTCGCGCCACATCATTCCCACCTTCAAGGTGCAGCGTC
GTATTGCGGTCGGCTTCGTCATGGGCGCCGTCGTCATAGCGTTTGTGTTT
TCCGGTCGCTGGGTGTTTGCCATAGGCATGTTGGCAATCAGTCTCACCGG
TCTGTATGAGTACTATCGCATGGTGGCGGCCAAGGGACATCTGCCTGCGT
ACAAAATGGGATTGTGCGTCACCGCAGCTACTCTGCTCTCCAGCGCGTGC
TCGTCAACGCTGGCCGACGTGGTTTTCCCAGTCGGCGGTACCATGATATG
CATTTACTTGTTGTTTAGACGCCGAAAGATCGCCACAATCGCCGACATTA
GCACCACCTTCATGGGGTTGTTCTACGCCGGCTATCTGCCCAGCTACTGG
ATTCGCTTGCACGAATATAACGGCGCGTTGACGAAAAACGTTGTGGCGGG
CGTCATCTCGTTTGTATGGCCTACTGCGTCGTGGTTTCAACCCACCATCA
CCGTGGGGTCTCTCATTGTGTTTTGGACGTGGCTGTCTGGCGCCAGTGCC
GATATTGGCGCCTTTTTTGTGGGCAGAGCGTTCGGCAAGACGCGTTTTAG
CGATATTTCCCCGAAGAAGACCATTGAGGGAGCCGTGGCGGGATTCATAT
GTTCGGCAAGCGTATCCGTCTTGGGCGCATACCTGCTGCAGTGGCCGCTA
TGGTGGGCCACGGGAGCTGTATATGGCGTCACCGTGGGCATTCTGGGGCT
CTGCGGTGATCTGTTTGAAAGCTGTTTCAAGCGTGATGTGGGATGGAAGG
ACAGTGGATCACTGTTCCCTGGGCATGGTGGCATGCTCGATCGCGCAGAT
AGTTATGTGCTGGTGGCACCTCTTGTTTATTTCTTTGCAACTTTGGTGCT
GCCTTTCATCACGCGCATTGTTCGGTAG
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Coding sequence (CDS) from alignment at NODE_7_length_102599_cov_4.541909:54657..55784-

>Gcaud2846.t1 ID=Gcaud2846.t1|Name=Gcaud2846.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1128bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:54657..55784- (Gracilaria caudata M_176_S67 male)
ATGTCGCCAGCTTTCCGTACCACGCTCCGCCTCTCCCCAGCCTTCGCTCC
AGCCCTGTTGCTTCCCGCCTGCCGTGCTCAGTCTGCTTGCCCCCGCACCT
CGCCCTCCTTACGCCCGCTGCGCGCGCTGGCTGCCTCCGCAAAGCTCTCC
GCGCCTAAGAATGATCTGGCCCACCATCCCGACGATCCCGCGCACATGGC
GCAGCAACGCGCGTCGCGCCACATCATTCCCACCTTCAAGGTGCAGCGTC
GTATTGCGGTCGGCTTCGTCATGGGCGCCGTCGTCATAGCGTTTGTGTTT
TCCGGTCGCTGGGTGTTTGCCATAGGCATGTTGGCAATCAGTCTCACCGG
TCTGTATGAGTACTATCGCATGGTGGCGGCCAAGGGACATCTGCCTGCGT
ACAAAATGGGATTGTGCGTCACCGCAGCTACTCTGCTCTCCAGCGCGTGC
TCGTCAACGCTGGCCGACGTGGTTTTCCCAGTCGGCGGTACCATGATATG
CATTTACTTGTTGTTTAGACGCCGAAAGATCGCCACAATCGCCGACATTA
GCACCACCTTCATGGGGTTGTTCTACGCCGGCTATCTGCCCAGCTACTGG
ATTCGCTTGCACGAATATAACGGCGCGTTGACGAAAAACGTTGTGGCGGG
CGTCATCTCGTTTGTATGGCCTACTGCGTCGTGGTTTCAACCCACCATCA
CCGTGGGGTCTCTCATTGTGTTTTGGACGTGGCTGTCTGGCGCCAGTGCC
GATATTGGCGCCTTTTTTGTGGGCAGAGCGTTCGGCAAGACGCGTTTTAG
CGATATTTCCCCGAAGAAGACCATTGAGGGAGCCGTGGCGGGATTCATAT
GTTCGGCAAGCGTATCCGTCTTGGGCGCATACCTGCTGCAGTGGCCGCTA
TGGTGGGCCACGGGAGCTGTATATGGCGTCACCGTGGGCATTCTGGGGCT
CTGCGGTGATCTGTTTGAAAGCTGTTTCAAGCGTGATGTGGGATGGAAGG
ACAGTGGATCACTGTTCCCTGGGCATGGTGGCATGCTCGATCGCGCAGAT
AGTTATGTGCTGGTGGCACCTCTTGTTTATTTCTTTGCAACTTTGGTGCT
GCCTTTCATCACGCGCATTGTTCGGTAG
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