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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2845.t1.stop1 | Gcaud2845.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_7_length_102599_cov_4.541909 53202..53204 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2845.t1.start1 | Gcaud2845.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_7_length_102599_cov_4.541909 54193..54195 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2845.t1 ID=Gcaud2845.t1|Name=Gcaud2845.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=258bp
MWRWNQSNPSTAVVCALPKHPYSSRLVAARVDTDHSTGKGKFALTGRYAS
KKDSFGIDAAYAIDDSNTIYATYGVTDEKLLALGIETGFSAFSRRGTVDL
TYNPPRDAAALKAAVRQGKFKVSAYFSFDNFKKDIVRSHSERYELEAKIS
GVENLKISFDGKSRAAKIKLSHKLDAKNKLDAEYHHLAGGSKAVVFTLKH
AYSKAHTFALGFNYGAKKCKAEWDCKTDNGPWTITTNFPFNESPLSGDLS
IKRRFDF* back to topspliced messenger RNA >Gcaud2845.t1 ID=Gcaud2845.t1|Name=Gcaud2845.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=774bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:53202..54195- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTGGCGTTGGAACCAATCAAACCCATCCACAGCCGTCGTGTGCGCCCT
TCCCAAGCATCCATACTCATCACGCTTGGTTGCTGCCCGAGTGGATACCG
ACCATTCTACAGGCAAGGGCAAGTTTGCTTTAACGGGTCGCTACGCTTCT
AAGAAGGATTCTTTCGGCATTGATGCTGCTTATGCCATAGATGATTCCAA
TACTATCTACGCTACGTACGGTGTTACCGATGAGAAACTTCTCGCTCTCG
GCATTGAAACCGGCTTTTCTGCCTTCTCACGTCGCGGAACAGTAGACCTC
ACGTACAACCCCCCGCGAGATGCCGCAGCATTGAAAGCCGCTGTACGTCA
AGGCAAGTTTAAGGTGTCTGCGTATTTCTCCTTCGATAACTTCAAGAAGG
ATATAGTAAGGAGTCACTCTGAGCGCTACGAACTTGAAGCCAAGATCAGT
GGTGTTGAGAACCTCAAGATTAGTTTTGATGGAAAGTCTCGCGCAGCTAA
GATCAAGTTGTCTCACAAGCTCGATGCCAAGAATAAGTTGGATGCTGAGT
ACCATCATCTTGCAGGCGGTTCAAAAGCTGTCGTGTTCACTTTGAAACAC
GCTTACTCCAAGGCACACACTTTTGCACTTGGCTTCAATTATGGAGCCAA
AAAGTGCAAAGCTGAATGGGATTGCAAGACTGACAACGGTCCTTGGACCA
TCACAACCAACTTCCCCTTCAACGAAAGTCCATTATCCGGAGATTTGTCC
ATCAAACGTCGATTCGACTTCTAA back to topprotein sequence of Gcaud2845.t1 >Gcaud2845.t1 ID=Gcaud2845.t1|Name=Gcaud2845.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=258bp
MWRWNQSNPSTAVVCALPKHPYSSRLVAARVDTDHSTGKGKFALTGRYAS
KKDSFGIDAAYAIDDSNTIYATYGVTDEKLLALGIETGFSAFSRRGTVDL
TYNPPRDAAALKAAVRQGKFKVSAYFSFDNFKKDIVRSHSERYELEAKIS
GVENLKISFDGKSRAAKIKLSHKLDAKNKLDAEYHHLAGGSKAVVFTLKH
AYSKAHTFALGFNYGAKKCKAEWDCKTDNGPWTITTNFPFNESPLSGDLS
IKRRFDF* back to topmRNA from alignment at NODE_7_length_102599_cov_4.541909:53202..54195- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2845.t1 ID=Gcaud2845.t1|Name=Gcaud2845.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=994bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:53202..54195- (Gracilaria caudata M_176_S67 male)
ATGTGGCGTTGGAACCAATCAAACCCATCCACAGCCGTCGTGTGCGCCCT
TCCCAAGCATCCATACTCATCACGCTTGGTACGCTTTTGATCAATGTCTT
TGTCGCTTTCTCCCTCTATCGCGTGCTAAAGTTCTCTGACTCCGACCTCT
TTTGTGGCTTTCGATGCAGGTTGCTGCCCGAGTGGATACCGACCATTCTA
CAGGCAAGGGCAAGTTTGCTTTAACGGGTCGCTACGCTTCTAAGAAGGAT
TCTTTCGGCATTGATGCTGCTTATGCCATAGATGATTCCAATACTATCTA
CGCTACGTACGGTGTTACCGATGAGAAACTTCTCGCTCTCGGCATTGAAA
CCGGCTTTTCTGCCTTCTCACGTCGCGGAACAGTAGACCTCACGTACAAC
CCCCCGCGAGATGCCGCAGCATTGAAAGCCGCTGTACGTCAAGGCAAGTT
TAAGGTGTCTGCGTATTTCTCCTTCGATAACTTCAAGAAGGATATAGTAA
GGAGTCACTCTGAGCGCTACGAACTTGAAGCCAAGATCAGTGGTGTTGAG
AACCTCAAGATTAGTTTTGATGGAAAGTCTCGCGCAGCTAAGATCAAGTT
GTCTCACAAGCTCGATGCCAAGAATAAGTTGGATGCTGAGTACCATCATC
TTGCAGGCGGTTCAAAAGCTGTCGTGTTCACTTTGAAACACGCTTACTCC
AAGGCACACACTTTTGCACTTGGCTTCAATTATGGAGCCAAAAAGTGCAA
AGCTGAATGGGATTGCAAGACTGACAACGGTCCTTGGACCATCACAACCA
ACTTCCCCTTCAACGAAAGGTACGTTTCAATACCACTTGTTTCCATTTGA
CCAGAAGCTTTCCGTATGCTTTTCGTAATGTTCCGTATTCACTGACAAAT
TCGTACTTGCACTGCAATTGTCGGTGAACCCATCAATGTTCTACTCAGTC
CATTATCCGGAGATTTGTCCATCAAACGTCGATTCGACTTCTAA back to topCoding sequence (CDS) from alignment at NODE_7_length_102599_cov_4.541909:53202..54195- >Gcaud2845.t1 ID=Gcaud2845.t1|Name=Gcaud2845.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=774bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:53202..54195- (Gracilaria caudata M_176_S67 male)
ATGTGGCGTTGGAACCAATCAAACCCATCCACAGCCGTCGTGTGCGCCCT
TCCCAAGCATCCATACTCATCACGCTTGGTTGCTGCCCGAGTGGATACCG
ACCATTCTACAGGCAAGGGCAAGTTTGCTTTAACGGGTCGCTACGCTTCT
AAGAAGGATTCTTTCGGCATTGATGCTGCTTATGCCATAGATGATTCCAA
TACTATCTACGCTACGTACGGTGTTACCGATGAGAAACTTCTCGCTCTCG
GCATTGAAACCGGCTTTTCTGCCTTCTCACGTCGCGGAACAGTAGACCTC
ACGTACAACCCCCCGCGAGATGCCGCAGCATTGAAAGCCGCTGTACGTCA
AGGCAAGTTTAAGGTGTCTGCGTATTTCTCCTTCGATAACTTCAAGAAGG
ATATAGTAAGGAGTCACTCTGAGCGCTACGAACTTGAAGCCAAGATCAGT
GGTGTTGAGAACCTCAAGATTAGTTTTGATGGAAAGTCTCGCGCAGCTAA
GATCAAGTTGTCTCACAAGCTCGATGCCAAGAATAAGTTGGATGCTGAGT
ACCATCATCTTGCAGGCGGTTCAAAAGCTGTCGTGTTCACTTTGAAACAC
GCTTACTCCAAGGCACACACTTTTGCACTTGGCTTCAATTATGGAGCCAA
AAAGTGCAAAGCTGAATGGGATTGCAAGACTGACAACGGTCCTTGGACCA
TCACAACCAACTTCCCCTTCAACGAAAGTCCATTATCCGGAGATTTGTCC
ATCAAACGTCGATTCGACTTCTAA back to top
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