Gcaud2844.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2844.t1
Unique Name	Gcaud2844.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	242

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_7_length_102599_cov_4.541909	contig	NODE_7_length_102599_cov_4.541909:52424..53149 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2850.Phatr46182
PFAMs	ACT_7
Max annot lvl	2759\|Eukaryota
Evalue	2.3e-11
EggNOG OGs	COG3603@1\|root,2S7H6@2759\|Eukaryota
Description	ACT domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2844	Gcaud2844	Gracilaria caudata M_176_S67 male	gene	NODE_7_length_102599_cov_4.541909 52424..53149 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2844.t1.start1	Gcaud2844.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_7_length_102599_cov_4.541909 52424..52426 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2844.t1.CDS1	Gcaud2844.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_7_length_102599_cov_4.541909 52424..53149 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2844.t1.exon1	Gcaud2844.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_7_length_102599_cov_4.541909 52424..53149 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2844.t1.stop1	Gcaud2844.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_7_length_102599_cov_4.541909 53147..53149 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2844.t1	Gcaud2844.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_7_length_102599_cov_4.541909 52424..53149 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_7_length_102599_cov_4.541909:52424..53149+
coding sequence from alignment at NODE_7_length_102599_cov_4.541909:52424..53149+

mRNA sequence

>Gcaud2844.t1 ID=Gcaud2844.t1|Name=Gcaud2844.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=242bp
MSAIPADPSVARVGLVFGLVLAGMSPPPAPLIAFYSRFRTLLQEGLKFAG
VKESEVFIYEPNMLHLTVATFRSFLTPPPPNPELFVSECKGLVVRASRRS
GWPVAGTYVLTLNEAKVQSNGVCTFLYGDKLRVIERMRQCIRAEMMEHKS
MASLRYIECPTNDIKIPNIIHSTVLRWRKTPRINATKLQDIFSEAFVLTK
AAEYPMDIPITSVSLLREWRPYMRTKTCVAQLWPLESDDDN*

spliced messenger RNA

>Gcaud2844.t1 ID=Gcaud2844.t1|Name=Gcaud2844.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=726bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:52424..53149+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGCAATTCCGGCAGACCCTTCGGTTGCCAGAGTTGGACTTGTTTT
CGGACTTGTGCTGGCAGGCATGTCCCCACCACCAGCCCCTCTAATAGCCT
TCTATTCAAGGTTTCGTACACTTCTGCAAGAAGGTTTGAAGTTCGCCGGG
GTCAAGGAATCGGAAGTTTTCATTTATGAACCAAATATGTTGCACTTGAC
TGTCGCAACATTTCGATCCTTTCTAACGCCACCTCCCCCAAACCCTGAGC
TTTTTGTGAGCGAGTGTAAGGGGCTCGTGGTACGTGCATCTCGTAGGTCA
GGCTGGCCTGTAGCTGGGACCTATGTATTAACTCTTAATGAAGCAAAGGT
ACAAAGCAATGGCGTGTGCACGTTTTTATACGGTGACAAGCTACGGGTGA
TAGAGAGAATGCGGCAATGTATTCGAGCAGAGATGATGGAGCATAAGTCA
ATGGCCAGTTTACGTTATATCGAATGCCCCACGAATGACATTAAGATCCC
AAACATCATCCATTCAACAGTACTCCGTTGGAGAAAAACGCCAAGAATCA
ACGCGACGAAGTTACAAGATATTTTTTCTGAAGCATTTGTTCTCACAAAA
GCCGCTGAGTATCCCATGGACATTCCGATTACTTCGGTTTCACTCCTTCG
TGAATGGAGGCCGTACATGAGAACGAAGACGTGCGTGGCACAATTGTGGC
CTCTGGAAAGCGATGACGACAACTAA

protein sequence of Gcaud2844.t1

>Gcaud2844.t1 ID=Gcaud2844.t1|Name=Gcaud2844.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=242bp
MSAIPADPSVARVGLVFGLVLAGMSPPPAPLIAFYSRFRTLLQEGLKFAG
VKESEVFIYEPNMLHLTVATFRSFLTPPPPNPELFVSECKGLVVRASRRS
GWPVAGTYVLTLNEAKVQSNGVCTFLYGDKLRVIERMRQCIRAEMMEHKS
MASLRYIECPTNDIKIPNIIHSTVLRWRKTPRINATKLQDIFSEAFVLTK
AAEYPMDIPITSVSLLREWRPYMRTKTCVAQLWPLESDDDN*

mRNA from alignment at NODE_7_length_102599_cov_4.541909:52424..53149+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2844.t1 ID=Gcaud2844.t1|Name=Gcaud2844.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=726bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:52424..53149+ (Gracilaria caudata M_176_S67 male)
ATGAGTGCAATTCCGGCAGACCCTTCGGTTGCCAGAGTTGGACTTGTTTT
CGGACTTGTGCTGGCAGGCATGTCCCCACCACCAGCCCCTCTAATAGCCT
TCTATTCAAGGTTTCGTACACTTCTGCAAGAAGGTTTGAAGTTCGCCGGG
GTCAAGGAATCGGAAGTTTTCATTTATGAACCAAATATGTTGCACTTGAC
TGTCGCAACATTTCGATCCTTTCTAACGCCACCTCCCCCAAACCCTGAGC
TTTTTGTGAGCGAGTGTAAGGGGCTCGTGGTACGTGCATCTCGTAGGTCA
GGCTGGCCTGTAGCTGGGACCTATGTATTAACTCTTAATGAAGCAAAGGT
ACAAAGCAATGGCGTGTGCACGTTTTTATACGGTGACAAGCTACGGGTGA
TAGAGAGAATGCGGCAATGTATTCGAGCAGAGATGATGGAGCATAAGTCA
ATGGCCAGTTTACGTTATATCGAATGCCCCACGAATGACATTAAGATCCC
AAACATCATCCATTCAACAGTACTCCGTTGGAGAAAAACGCCAAGAATCA
ACGCGACGAAGTTACAAGATATTTTTTCTGAAGCATTTGTTCTCACAAAA
GCCGCTGAGTATCCCATGGACATTCCGATTACTTCGGTTTCACTCCTTCG
TGAATGGAGGCCGTACATGAGAACGAAGACGTGCGTGGCACAATTGTGGC
CTCTGGAAAGCGATGACGACAACTAA

Coding sequence (CDS) from alignment at NODE_7_length_102599_cov_4.541909:52424..53149+

>Gcaud2844.t1 ID=Gcaud2844.t1|Name=Gcaud2844.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=726bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:52424..53149+ (Gracilaria caudata M_176_S67 male)
ATGAGTGCAATTCCGGCAGACCCTTCGGTTGCCAGAGTTGGACTTGTTTT
CGGACTTGTGCTGGCAGGCATGTCCCCACCACCAGCCCCTCTAATAGCCT
TCTATTCAAGGTTTCGTACACTTCTGCAAGAAGGTTTGAAGTTCGCCGGG
GTCAAGGAATCGGAAGTTTTCATTTATGAACCAAATATGTTGCACTTGAC
TGTCGCAACATTTCGATCCTTTCTAACGCCACCTCCCCCAAACCCTGAGC
TTTTTGTGAGCGAGTGTAAGGGGCTCGTGGTACGTGCATCTCGTAGGTCA
GGCTGGCCTGTAGCTGGGACCTATGTATTAACTCTTAATGAAGCAAAGGT
ACAAAGCAATGGCGTGTGCACGTTTTTATACGGTGACAAGCTACGGGTGA
TAGAGAGAATGCGGCAATGTATTCGAGCAGAGATGATGGAGCATAAGTCA
ATGGCCAGTTTACGTTATATCGAATGCCCCACGAATGACATTAAGATCCC
AAACATCATCCATTCAACAGTACTCCGTTGGAGAAAAACGCCAAGAATCA
ACGCGACGAAGTTACAAGATATTTTTTCTGAAGCATTTGTTCTCACAAAA
GCCGCTGAGTATCCCATGGACATTCCGATTACTTCGGTTTCACTCCTTCG
TGAATGGAGGCCGTACATGAGAACGAAGACGTGCGTGGCACAATTGTGGC
CTCTGGAAAGCGATGACGACAACTAA