Gcaud2843.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2843.t1
Unique Name	Gcaud2843.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	617

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_7_length_102599_cov_4.541909	contig	NODE_7_length_102599_cov_4.541909:49573..51423 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2843	Gcaud2843	Gracilaria caudata M_176_S67 male	gene	NODE_7_length_102599_cov_4.541909 49573..51423 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2843.t1.stop1	Gcaud2843.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_7_length_102599_cov_4.541909 49573..49575 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2843.t1.CDS1	Gcaud2843.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_7_length_102599_cov_4.541909 49573..51423 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2843.t1.exon1	Gcaud2843.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_7_length_102599_cov_4.541909 49573..51423 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2843.t1.start1	Gcaud2843.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_7_length_102599_cov_4.541909 51421..51423 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2843.t1	Gcaud2843.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_7_length_102599_cov_4.541909 49573..51423 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_7_length_102599_cov_4.541909:49573..51423-
coding sequence from alignment at NODE_7_length_102599_cov_4.541909:49573..51423-

mRNA sequence

>Gcaud2843.t1 ID=Gcaud2843.t1|Name=Gcaud2843.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=617bp
MNGSRFSLFRFAIACDSLVPNRFSNRIFACRTVFSQSPRQCTATREDVVP
ALTKTILCERENAVEAPPVSIPEALPKDSKKRAVKPSDLYDALVYEGESR
RRSKLWADAMAVTVNGSRITEKEDANWRERLEQCRMQGTAEHALNIVAEI
SHKGYVLSARAAITVIEVCISAEEYEGAEHVLAILQSLPQDHPTRTSRLV
CIARTFLAMSFTSRGWYDRALQVMQFPNESFANDNGKLVGILSDLGLGRD
TLAWGVLMKALTKVGRAETAVAVVDVAMRQGVGMTDSLLHLTIDSLRGLN
RWKEAEWLFDTAVEKGVKPSEMTLGSILLSLTSRDARAMVNKERIKEIVD
MAKHPSTKFMTTALMALTSVGLIERAESLFYEVGQTQASGVPGEEAFGNL
MAGYGNYLQLMPADIVDEVSTNGKLEEINKKADLLWELYMKHYRIPKVGS
LSRAAKNMMVGNYLRVKTRSYRLKEAVDVLEGLVVSPEVHPALNVRIGHI
CTVMGALELCCDVEQLERLIEIMQQGGVRHDMRSVAFAMGTHVGDGNLSA
ALTLAEKHLEEVSESGPLSPQFRQHHPLLLLRRLQTLRTALKDSGIKKLK
QLDDSIRRFQRKYGVR*

spliced messenger RNA

>Gcaud2843.t1 ID=Gcaud2843.t1|Name=Gcaud2843.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1851bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:49573..51423- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGGAAGTCGATTTTCACTATTTCGCTTCGCAATTGCGTGCGACTC
ACTTGTTCCCAACCGATTTTCAAACAGAATCTTCGCGTGCAGGACGGTGT
TTTCACAATCCCCGCGTCAATGTACTGCAACTCGAGAAGACGTTGTTCCC
GCACTGACGAAAACAATATTATGTGAACGAGAAAACGCCGTTGAAGCACC
ACCGGTATCAATTCCTGAGGCACTTCCAAAGGATAGCAAAAAGCGGGCAG
TGAAACCATCCGATCTTTACGATGCTCTTGTTTACGAAGGTGAATCACGT
CGCCGGTCGAAACTTTGGGCTGATGCAATGGCAGTTACCGTAAATGGCTC
AAGAATTACGGAGAAAGAGGATGCCAATTGGAGGGAACGATTAGAACAAT
GTCGAATGCAAGGGACCGCTGAGCACGCGTTGAACATCGTTGCTGAAATT
AGTCACAAAGGTTACGTGCTATCGGCGAGAGCCGCCATCACGGTTATCGA
AGTCTGCATTTCCGCTGAAGAATATGAAGGAGCTGAACATGTGCTCGCAA
TATTACAATCACTACCTCAGGATCATCCAACTCGGACAAGTCGATTAGTG
TGCATAGCTAGGACGTTTTTGGCCATGTCATTCACTTCACGGGGATGGTA
TGACAGAGCACTTCAAGTTATGCAATTTCCGAACGAAAGTTTTGCCAACG
ATAACGGAAAGCTTGTTGGTATTCTGAGTGATCTTGGTTTGGGACGAGAC
ACTCTTGCGTGGGGCGTTCTAATGAAAGCATTGACAAAAGTTGGAAGAGC
TGAGACGGCTGTTGCGGTTGTAGACGTCGCGATGCGGCAAGGAGTTGGAA
TGACAGACTCTCTGCTTCATCTTACCATTGACTCTTTGCGAGGACTCAAT
CGATGGAAAGAAGCAGAATGGCTATTCGACACAGCCGTTGAAAAAGGTGT
GAAGCCAAGCGAAATGACTCTTGGGTCAATTTTGTTATCTCTGACTAGCA
GAGATGCTCGAGCTATGGTGAACAAGGAAAGAATCAAAGAAATAGTGGAC
ATGGCGAAGCATCCATCAACAAAGTTTATGACAACTGCGCTAATGGCCCT
TACATCTGTGGGACTTATTGAAAGGGCTGAAAGTTTATTTTACGAAGTTG
GGCAAACCCAAGCTTCTGGGGTGCCTGGAGAAGAAGCATTTGGAAATTTG
ATGGCTGGCTATGGAAATTATCTGCAACTGATGCCTGCAGATATCGTGGA
CGAAGTGTCCACAAACGGAAAGCTTGAAGAGATTAACAAGAAAGCCGATT
TGTTATGGGAGTTATACATGAAGCATTACAGAATACCGAAGGTTGGAAGT
CTATCACGTGCCGCAAAGAATATGATGGTTGGTAATTACCTACGAGTGAA
GACAAGAAGCTACAGGCTTAAGGAAGCAGTAGATGTGCTAGAAGGTCTTG
TGGTTTCACCTGAAGTGCATCCAGCGTTGAATGTAAGAATCGGGCATATC
TGTACGGTCATGGGTGCACTAGAATTGTGTTGTGACGTAGAACAACTGGA
AAGACTGATTGAAATCATGCAGCAAGGGGGTGTTAGACATGACATGCGCT
CTGTTGCGTTCGCTATGGGGACGCATGTAGGTGACGGGAACTTATCTGCG
GCACTTACTTTGGCAGAGAAGCACTTGGAAGAAGTCAGTGAGAGTGGGCC
ATTATCACCGCAATTTCGTCAGCACCATCCCTTACTGTTGTTGCGGCGCC
TACAAACGTTGAGGACTGCCTTGAAGGATTCAGGAATCAAGAAACTTAAG
CAATTGGATGATTCGATTAGAAGGTTCCAAAGAAAGTACGGTGTGCGGTA
G

protein sequence of Gcaud2843.t1

>Gcaud2843.t1 ID=Gcaud2843.t1|Name=Gcaud2843.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=617bp
MNGSRFSLFRFAIACDSLVPNRFSNRIFACRTVFSQSPRQCTATREDVVP
ALTKTILCERENAVEAPPVSIPEALPKDSKKRAVKPSDLYDALVYEGESR
RRSKLWADAMAVTVNGSRITEKEDANWRERLEQCRMQGTAEHALNIVAEI
SHKGYVLSARAAITVIEVCISAEEYEGAEHVLAILQSLPQDHPTRTSRLV
CIARTFLAMSFTSRGWYDRALQVMQFPNESFANDNGKLVGILSDLGLGRD
TLAWGVLMKALTKVGRAETAVAVVDVAMRQGVGMTDSLLHLTIDSLRGLN
RWKEAEWLFDTAVEKGVKPSEMTLGSILLSLTSRDARAMVNKERIKEIVD
MAKHPSTKFMTTALMALTSVGLIERAESLFYEVGQTQASGVPGEEAFGNL
MAGYGNYLQLMPADIVDEVSTNGKLEEINKKADLLWELYMKHYRIPKVGS
LSRAAKNMMVGNYLRVKTRSYRLKEAVDVLEGLVVSPEVHPALNVRIGHI
CTVMGALELCCDVEQLERLIEIMQQGGVRHDMRSVAFAMGTHVGDGNLSA
ALTLAEKHLEEVSESGPLSPQFRQHHPLLLLRRLQTLRTALKDSGIKKLK
QLDDSIRRFQRKYGVR*

mRNA from alignment at NODE_7_length_102599_cov_4.541909:49573..51423-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2843.t1 ID=Gcaud2843.t1|Name=Gcaud2843.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1851bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:49573..51423- (Gracilaria caudata M_176_S67 male)
ATGAACGGAAGTCGATTTTCACTATTTCGCTTCGCAATTGCGTGCGACTC
ACTTGTTCCCAACCGATTTTCAAACAGAATCTTCGCGTGCAGGACGGTGT
TTTCACAATCCCCGCGTCAATGTACTGCAACTCGAGAAGACGTTGTTCCC
GCACTGACGAAAACAATATTATGTGAACGAGAAAACGCCGTTGAAGCACC
ACCGGTATCAATTCCTGAGGCACTTCCAAAGGATAGCAAAAAGCGGGCAG
TGAAACCATCCGATCTTTACGATGCTCTTGTTTACGAAGGTGAATCACGT
CGCCGGTCGAAACTTTGGGCTGATGCAATGGCAGTTACCGTAAATGGCTC
AAGAATTACGGAGAAAGAGGATGCCAATTGGAGGGAACGATTAGAACAAT
GTCGAATGCAAGGGACCGCTGAGCACGCGTTGAACATCGTTGCTGAAATT
AGTCACAAAGGTTACGTGCTATCGGCGAGAGCCGCCATCACGGTTATCGA
AGTCTGCATTTCCGCTGAAGAATATGAAGGAGCTGAACATGTGCTCGCAA
TATTACAATCACTACCTCAGGATCATCCAACTCGGACAAGTCGATTAGTG
TGCATAGCTAGGACGTTTTTGGCCATGTCATTCACTTCACGGGGATGGTA
TGACAGAGCACTTCAAGTTATGCAATTTCCGAACGAAAGTTTTGCCAACG
ATAACGGAAAGCTTGTTGGTATTCTGAGTGATCTTGGTTTGGGACGAGAC
ACTCTTGCGTGGGGCGTTCTAATGAAAGCATTGACAAAAGTTGGAAGAGC
TGAGACGGCTGTTGCGGTTGTAGACGTCGCGATGCGGCAAGGAGTTGGAA
TGACAGACTCTCTGCTTCATCTTACCATTGACTCTTTGCGAGGACTCAAT
CGATGGAAAGAAGCAGAATGGCTATTCGACACAGCCGTTGAAAAAGGTGT
GAAGCCAAGCGAAATGACTCTTGGGTCAATTTTGTTATCTCTGACTAGCA
GAGATGCTCGAGCTATGGTGAACAAGGAAAGAATCAAAGAAATAGTGGAC
ATGGCGAAGCATCCATCAACAAAGTTTATGACAACTGCGCTAATGGCCCT
TACATCTGTGGGACTTATTGAAAGGGCTGAAAGTTTATTTTACGAAGTTG
GGCAAACCCAAGCTTCTGGGGTGCCTGGAGAAGAAGCATTTGGAAATTTG
ATGGCTGGCTATGGAAATTATCTGCAACTGATGCCTGCAGATATCGTGGA
CGAAGTGTCCACAAACGGAAAGCTTGAAGAGATTAACAAGAAAGCCGATT
TGTTATGGGAGTTATACATGAAGCATTACAGAATACCGAAGGTTGGAAGT
CTATCACGTGCCGCAAAGAATATGATGGTTGGTAATTACCTACGAGTGAA
GACAAGAAGCTACAGGCTTAAGGAAGCAGTAGATGTGCTAGAAGGTCTTG
TGGTTTCACCTGAAGTGCATCCAGCGTTGAATGTAAGAATCGGGCATATC
TGTACGGTCATGGGTGCACTAGAATTGTGTTGTGACGTAGAACAACTGGA
AAGACTGATTGAAATCATGCAGCAAGGGGGTGTTAGACATGACATGCGCT
CTGTTGCGTTCGCTATGGGGACGCATGTAGGTGACGGGAACTTATCTGCG
GCACTTACTTTGGCAGAGAAGCACTTGGAAGAAGTCAGTGAGAGTGGGCC
ATTATCACCGCAATTTCGTCAGCACCATCCCTTACTGTTGTTGCGGCGCC
TACAAACGTTGAGGACTGCCTTGAAGGATTCAGGAATCAAGAAACTTAAG
CAATTGGATGATTCGATTAGAAGGTTCCAAAGAAAGTACGGTGTGCGGTA
G

Coding sequence (CDS) from alignment at NODE_7_length_102599_cov_4.541909:49573..51423-

>Gcaud2843.t1 ID=Gcaud2843.t1|Name=Gcaud2843.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1851bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:49573..51423- (Gracilaria caudata M_176_S67 male)
ATGAACGGAAGTCGATTTTCACTATTTCGCTTCGCAATTGCGTGCGACTC
ACTTGTTCCCAACCGATTTTCAAACAGAATCTTCGCGTGCAGGACGGTGT
TTTCACAATCCCCGCGTCAATGTACTGCAACTCGAGAAGACGTTGTTCCC
GCACTGACGAAAACAATATTATGTGAACGAGAAAACGCCGTTGAAGCACC
ACCGGTATCAATTCCTGAGGCACTTCCAAAGGATAGCAAAAAGCGGGCAG
TGAAACCATCCGATCTTTACGATGCTCTTGTTTACGAAGGTGAATCACGT
CGCCGGTCGAAACTTTGGGCTGATGCAATGGCAGTTACCGTAAATGGCTC
AAGAATTACGGAGAAAGAGGATGCCAATTGGAGGGAACGATTAGAACAAT
GTCGAATGCAAGGGACCGCTGAGCACGCGTTGAACATCGTTGCTGAAATT
AGTCACAAAGGTTACGTGCTATCGGCGAGAGCCGCCATCACGGTTATCGA
AGTCTGCATTTCCGCTGAAGAATATGAAGGAGCTGAACATGTGCTCGCAA
TATTACAATCACTACCTCAGGATCATCCAACTCGGACAAGTCGATTAGTG
TGCATAGCTAGGACGTTTTTGGCCATGTCATTCACTTCACGGGGATGGTA
TGACAGAGCACTTCAAGTTATGCAATTTCCGAACGAAAGTTTTGCCAACG
ATAACGGAAAGCTTGTTGGTATTCTGAGTGATCTTGGTTTGGGACGAGAC
ACTCTTGCGTGGGGCGTTCTAATGAAAGCATTGACAAAAGTTGGAAGAGC
TGAGACGGCTGTTGCGGTTGTAGACGTCGCGATGCGGCAAGGAGTTGGAA
TGACAGACTCTCTGCTTCATCTTACCATTGACTCTTTGCGAGGACTCAAT
CGATGGAAAGAAGCAGAATGGCTATTCGACACAGCCGTTGAAAAAGGTGT
GAAGCCAAGCGAAATGACTCTTGGGTCAATTTTGTTATCTCTGACTAGCA
GAGATGCTCGAGCTATGGTGAACAAGGAAAGAATCAAAGAAATAGTGGAC
ATGGCGAAGCATCCATCAACAAAGTTTATGACAACTGCGCTAATGGCCCT
TACATCTGTGGGACTTATTGAAAGGGCTGAAAGTTTATTTTACGAAGTTG
GGCAAACCCAAGCTTCTGGGGTGCCTGGAGAAGAAGCATTTGGAAATTTG
ATGGCTGGCTATGGAAATTATCTGCAACTGATGCCTGCAGATATCGTGGA
CGAAGTGTCCACAAACGGAAAGCTTGAAGAGATTAACAAGAAAGCCGATT
TGTTATGGGAGTTATACATGAAGCATTACAGAATACCGAAGGTTGGAAGT
CTATCACGTGCCGCAAAGAATATGATGGTTGGTAATTACCTACGAGTGAA
GACAAGAAGCTACAGGCTTAAGGAAGCAGTAGATGTGCTAGAAGGTCTTG
TGGTTTCACCTGAAGTGCATCCAGCGTTGAATGTAAGAATCGGGCATATC
TGTACGGTCATGGGTGCACTAGAATTGTGTTGTGACGTAGAACAACTGGA
AAGACTGATTGAAATCATGCAGCAAGGGGGTGTTAGACATGACATGCGCT
CTGTTGCGTTCGCTATGGGGACGCATGTAGGTGACGGGAACTTATCTGCG
GCACTTACTTTGGCAGAGAAGCACTTGGAAGAAGTCAGTGAGAGTGGGCC
ATTATCACCGCAATTTCGTCAGCACCATCCCTTACTGTTGTTGCGGCGCC
TACAAACGTTGAGGACTGCCTTGAAGGATTCAGGAATCAAGAAACTTAAG
CAATTGGATGATTCGATTAGAAGGTTCCAAAGAAAGTACGGTGTGCGGTA
G