Gcaud2841.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2841.t1
Unique Name	Gcaud2841.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	534

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_7_length_102599_cov_4.541909	contig	NODE_7_length_102599_cov_4.541909:46088..47689 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705677.1
PFAMs	DUF295,F-box,RHD3
Max annot lvl	2759\|Eukaryota
Evalue	1.13e-57
EggNOG OGs	KOG2203@1\|root,KOG2203@2759\|Eukaryota
Description	GTP binding
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2841	Gcaud2841	Gracilaria caudata M_176_S67 male	gene	NODE_7_length_102599_cov_4.541909 46088..47689 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2841.t1.stop1	Gcaud2841.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_7_length_102599_cov_4.541909 46088..46090 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2841.t1.CDS1	Gcaud2841.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_7_length_102599_cov_4.541909 46088..47689 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2841.t1.exon1	Gcaud2841.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_7_length_102599_cov_4.541909 46088..47689 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2841.t1.start1	Gcaud2841.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_7_length_102599_cov_4.541909 47687..47689 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2841.t1	Gcaud2841.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_7_length_102599_cov_4.541909 46088..47689 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_7_length_102599_cov_4.541909:46088..47689-
coding sequence from alignment at NODE_7_length_102599_cov_4.541909:46088..47689-

mRNA sequence

>Gcaud2841.t1 ID=Gcaud2841.t1|Name=Gcaud2841.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=534bp
MAGPTINGLQAAAAIAEEAFATVFATSPRNASVSGLLATALDVNISIPAP
DLSKPVAKQSRKSSARDEHVLCAGAISNGPLLITLDGLRESSVRSSCGDS
MTLAAALSGVILLSVRMHDLVRPSSSGIGQIMGAIERSLVLRVSGVAPLL
PTRRLFIIAVRDYETDQIDQAELEQALLDQLSAAYEDIELPSGYTATQFS
DLFDLQVCTLPNEKHCEADYQAAANKLGALLREANNKYADAGMTPQRFSD
IAAKVQNALSDESTSDLPEDRELTATFACNAIMKSVLDKYRISTKHWKTQ
VDAGRIIPSFGEENDQYIERTLAVFDKDAVAYRTSKAYQRKREELKSRLL
SDSYALFAKQILKVRENAYQFFRGKLARIRITDKVEKHVRGAVSEAERYF
IENAEALRPKLSSCRFDNERQELVNHMRDDATERLQLARLQGNYVPSIRA
PIAFAFHTLLLAPFGQDSRMQVPYAEEMKQTYDPDKAKQAHIMRVRPFQS
GRVFTAKDSDELPSSAIDMLAPLFEEESSTDGS*

spliced messenger RNA

>Gcaud2841.t1 ID=Gcaud2841.t1|Name=Gcaud2841.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1602bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:46088..47689- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGGTCCCACAATCAATGGACTGCAAGCTGCGGCGGCCATCGCCGA
AGAGGCCTTCGCTACCGTATTTGCCACTTCTCCTCGCAATGCTTCAGTCT
CCGGACTGCTTGCCACTGCCCTAGATGTCAACATCTCCATCCCGGCACCC
GATCTTTCCAAACCAGTGGCAAAACAGTCGCGCAAGTCATCTGCGCGTGA
TGAGCATGTTCTATGTGCTGGTGCCATATCGAACGGCCCACTGCTCATAA
CTTTGGATGGTCTTCGTGAGAGTTCCGTCCGTTCCTCATGTGGAGACTCA
ATGACGCTTGCGGCCGCACTTTCGGGTGTCATTTTGCTCAGTGTTCGTAT
GCACGATCTTGTTAGACCTTCCTCCTCAGGTATTGGTCAGATTATGGGTG
CCATTGAGCGCAGTCTTGTGCTTCGTGTATCAGGAGTAGCACCTCTTCTT
CCAACCAGACGCCTCTTCATTATAGCTGTGCGCGACTATGAAACTGACCA
AATCGACCAAGCCGAATTGGAACAAGCCCTTTTGGACCAGCTCTCAGCCG
CATACGAAGATATTGAACTTCCTTCCGGTTACACTGCTACCCAATTCTCA
GATTTGTTTGATCTCCAGGTCTGTACGCTTCCTAATGAGAAGCACTGTGA
GGCTGATTATCAAGCGGCGGCGAACAAGCTCGGTGCTTTACTACGAGAAG
CAAACAATAAGTACGCTGATGCGGGTATGACACCCCAACGATTTTCAGAC
ATTGCTGCGAAAGTCCAGAACGCTCTCTCAGACGAATCAACTTCCGATCT
TCCGGAAGACCGAGAGCTTACGGCCACTTTTGCTTGCAACGCGATCATGA
AAAGTGTTCTTGATAAATACCGCATCTCAACTAAGCACTGGAAGACCCAA
GTGGATGCTGGTCGAATCATTCCGAGCTTTGGCGAAGAGAATGATCAATA
TATAGAGAGAACGCTGGCGGTGTTCGATAAGGATGCTGTTGCTTACAGAA
CATCCAAAGCTTACCAACGAAAGCGGGAAGAGCTCAAATCTCGACTTCTC
TCTGATTCATATGCTTTGTTTGCCAAACAGATTCTGAAAGTTCGAGAGAA
CGCTTACCAGTTTTTCCGTGGAAAGCTTGCAAGAATTAGAATCACGGACA
AAGTGGAAAAGCATGTAAGGGGAGCTGTGAGCGAAGCCGAGAGGTATTTC
ATCGAGAATGCAGAGGCGCTTCGCCCTAAATTGAGCAGTTGTCGTTTCGA
TAATGAGCGTCAAGAGCTAGTCAACCATATGCGAGACGACGCAACGGAAA
GACTGCAGTTGGCTCGACTGCAAGGGAACTATGTTCCATCCATTCGCGCA
CCAATTGCTTTCGCCTTCCACACACTTTTGTTGGCACCCTTTGGACAGGA
TTCCCGTATGCAAGTGCCCTACGCGGAAGAGATGAAACAGACGTATGATC
CAGACAAAGCGAAGCAGGCCCACATTATGCGCGTTCGGCCCTTTCAGAGC
GGTCGTGTCTTCACCGCGAAGGACTCTGACGAACTTCCTTCGAGTGCTAT
TGACATGCTTGCACCTCTCTTTGAGGAAGAATCTTCTACTGATGGCTCTT
GA

protein sequence of Gcaud2841.t1

>Gcaud2841.t1 ID=Gcaud2841.t1|Name=Gcaud2841.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=534bp
MAGPTINGLQAAAAIAEEAFATVFATSPRNASVSGLLATALDVNISIPAP
DLSKPVAKQSRKSSARDEHVLCAGAISNGPLLITLDGLRESSVRSSCGDS
MTLAAALSGVILLSVRMHDLVRPSSSGIGQIMGAIERSLVLRVSGVAPLL
PTRRLFIIAVRDYETDQIDQAELEQALLDQLSAAYEDIELPSGYTATQFS
DLFDLQVCTLPNEKHCEADYQAAANKLGALLREANNKYADAGMTPQRFSD
IAAKVQNALSDESTSDLPEDRELTATFACNAIMKSVLDKYRISTKHWKTQ
VDAGRIIPSFGEENDQYIERTLAVFDKDAVAYRTSKAYQRKREELKSRLL
SDSYALFAKQILKVRENAYQFFRGKLARIRITDKVEKHVRGAVSEAERYF
IENAEALRPKLSSCRFDNERQELVNHMRDDATERLQLARLQGNYVPSIRA
PIAFAFHTLLLAPFGQDSRMQVPYAEEMKQTYDPDKAKQAHIMRVRPFQS
GRVFTAKDSDELPSSAIDMLAPLFEEESSTDGS*

mRNA from alignment at NODE_7_length_102599_cov_4.541909:46088..47689-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2841.t1 ID=Gcaud2841.t1|Name=Gcaud2841.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1602bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:46088..47689- (Gracilaria caudata M_176_S67 male)
ATGGCAGGTCCCACAATCAATGGACTGCAAGCTGCGGCGGCCATCGCCGA
AGAGGCCTTCGCTACCGTATTTGCCACTTCTCCTCGCAATGCTTCAGTCT
CCGGACTGCTTGCCACTGCCCTAGATGTCAACATCTCCATCCCGGCACCC
GATCTTTCCAAACCAGTGGCAAAACAGTCGCGCAAGTCATCTGCGCGTGA
TGAGCATGTTCTATGTGCTGGTGCCATATCGAACGGCCCACTGCTCATAA
CTTTGGATGGTCTTCGTGAGAGTTCCGTCCGTTCCTCATGTGGAGACTCA
ATGACGCTTGCGGCCGCACTTTCGGGTGTCATTTTGCTCAGTGTTCGTAT
GCACGATCTTGTTAGACCTTCCTCCTCAGGTATTGGTCAGATTATGGGTG
CCATTGAGCGCAGTCTTGTGCTTCGTGTATCAGGAGTAGCACCTCTTCTT
CCAACCAGACGCCTCTTCATTATAGCTGTGCGCGACTATGAAACTGACCA
AATCGACCAAGCCGAATTGGAACAAGCCCTTTTGGACCAGCTCTCAGCCG
CATACGAAGATATTGAACTTCCTTCCGGTTACACTGCTACCCAATTCTCA
GATTTGTTTGATCTCCAGGTCTGTACGCTTCCTAATGAGAAGCACTGTGA
GGCTGATTATCAAGCGGCGGCGAACAAGCTCGGTGCTTTACTACGAGAAG
CAAACAATAAGTACGCTGATGCGGGTATGACACCCCAACGATTTTCAGAC
ATTGCTGCGAAAGTCCAGAACGCTCTCTCAGACGAATCAACTTCCGATCT
TCCGGAAGACCGAGAGCTTACGGCCACTTTTGCTTGCAACGCGATCATGA
AAAGTGTTCTTGATAAATACCGCATCTCAACTAAGCACTGGAAGACCCAA
GTGGATGCTGGTCGAATCATTCCGAGCTTTGGCGAAGAGAATGATCAATA
TATAGAGAGAACGCTGGCGGTGTTCGATAAGGATGCTGTTGCTTACAGAA
CATCCAAAGCTTACCAACGAAAGCGGGAAGAGCTCAAATCTCGACTTCTC
TCTGATTCATATGCTTTGTTTGCCAAACAGATTCTGAAAGTTCGAGAGAA
CGCTTACCAGTTTTTCCGTGGAAAGCTTGCAAGAATTAGAATCACGGACA
AAGTGGAAAAGCATGTAAGGGGAGCTGTGAGCGAAGCCGAGAGGTATTTC
ATCGAGAATGCAGAGGCGCTTCGCCCTAAATTGAGCAGTTGTCGTTTCGA
TAATGAGCGTCAAGAGCTAGTCAACCATATGCGAGACGACGCAACGGAAA
GACTGCAGTTGGCTCGACTGCAAGGGAACTATGTTCCATCCATTCGCGCA
CCAATTGCTTTCGCCTTCCACACACTTTTGTTGGCACCCTTTGGACAGGA
TTCCCGTATGCAAGTGCCCTACGCGGAAGAGATGAAACAGACGTATGATC
CAGACAAAGCGAAGCAGGCCCACATTATGCGCGTTCGGCCCTTTCAGAGC
GGTCGTGTCTTCACCGCGAAGGACTCTGACGAACTTCCTTCGAGTGCTAT
TGACATGCTTGCACCTCTCTTTGAGGAAGAATCTTCTACTGATGGCTCTT
GA

Coding sequence (CDS) from alignment at NODE_7_length_102599_cov_4.541909:46088..47689-

>Gcaud2841.t1 ID=Gcaud2841.t1|Name=Gcaud2841.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1602bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:46088..47689- (Gracilaria caudata M_176_S67 male)
ATGGCAGGTCCCACAATCAATGGACTGCAAGCTGCGGCGGCCATCGCCGA
AGAGGCCTTCGCTACCGTATTTGCCACTTCTCCTCGCAATGCTTCAGTCT
CCGGACTGCTTGCCACTGCCCTAGATGTCAACATCTCCATCCCGGCACCC
GATCTTTCCAAACCAGTGGCAAAACAGTCGCGCAAGTCATCTGCGCGTGA
TGAGCATGTTCTATGTGCTGGTGCCATATCGAACGGCCCACTGCTCATAA
CTTTGGATGGTCTTCGTGAGAGTTCCGTCCGTTCCTCATGTGGAGACTCA
ATGACGCTTGCGGCCGCACTTTCGGGTGTCATTTTGCTCAGTGTTCGTAT
GCACGATCTTGTTAGACCTTCCTCCTCAGGTATTGGTCAGATTATGGGTG
CCATTGAGCGCAGTCTTGTGCTTCGTGTATCAGGAGTAGCACCTCTTCTT
CCAACCAGACGCCTCTTCATTATAGCTGTGCGCGACTATGAAACTGACCA
AATCGACCAAGCCGAATTGGAACAAGCCCTTTTGGACCAGCTCTCAGCCG
CATACGAAGATATTGAACTTCCTTCCGGTTACACTGCTACCCAATTCTCA
GATTTGTTTGATCTCCAGGTCTGTACGCTTCCTAATGAGAAGCACTGTGA
GGCTGATTATCAAGCGGCGGCGAACAAGCTCGGTGCTTTACTACGAGAAG
CAAACAATAAGTACGCTGATGCGGGTATGACACCCCAACGATTTTCAGAC
ATTGCTGCGAAAGTCCAGAACGCTCTCTCAGACGAATCAACTTCCGATCT
TCCGGAAGACCGAGAGCTTACGGCCACTTTTGCTTGCAACGCGATCATGA
AAAGTGTTCTTGATAAATACCGCATCTCAACTAAGCACTGGAAGACCCAA
GTGGATGCTGGTCGAATCATTCCGAGCTTTGGCGAAGAGAATGATCAATA
TATAGAGAGAACGCTGGCGGTGTTCGATAAGGATGCTGTTGCTTACAGAA
CATCCAAAGCTTACCAACGAAAGCGGGAAGAGCTCAAATCTCGACTTCTC
TCTGATTCATATGCTTTGTTTGCCAAACAGATTCTGAAAGTTCGAGAGAA
CGCTTACCAGTTTTTCCGTGGAAAGCTTGCAAGAATTAGAATCACGGACA
AAGTGGAAAAGCATGTAAGGGGAGCTGTGAGCGAAGCCGAGAGGTATTTC
ATCGAGAATGCAGAGGCGCTTCGCCCTAAATTGAGCAGTTGTCGTTTCGA
TAATGAGCGTCAAGAGCTAGTCAACCATATGCGAGACGACGCAACGGAAA
GACTGCAGTTGGCTCGACTGCAAGGGAACTATGTTCCATCCATTCGCGCA
CCAATTGCTTTCGCCTTCCACACACTTTTGTTGGCACCCTTTGGACAGGA
TTCCCGTATGCAAGTGCCCTACGCGGAAGAGATGAAACAGACGTATGATC
CAGACAAAGCGAAGCAGGCCCACATTATGCGCGTTCGGCCCTTTCAGAGC
GGTCGTGTCTTCACCGCGAAGGACTCTGACGAACTTCCTTCGAGTGCTAT
TGACATGCTTGCACCTCTCTTTGAGGAAGAATCTTCTACTGATGGCTCTT
GA