Gcaud2840.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2840.t1
Unique Name	Gcaud2840.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	333

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_7_length_102599_cov_4.541909	contig	NODE_7_length_102599_cov_4.541909:44478..45553 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45351.EDO32559
Preferred name	HDAC8
PFAMs	Hist_deacetyl
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K11405
KEGG Pathway	ko05034,ko05165,ko05203,map05034,map05165,map05203
GOs	GO:0000118,GO:0000122,GO:0000228,GO:0000819,GO:0003674,GO:0003682,GO:0003824,GO:0004407,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0005886,GO:0006325,GO:0006333,GO:0006355,GO:0006357,GO:0006464,GO:0006476,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007063,GO:0008134,GO:0008150,GO:0008152,GO:0009719,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010639,GO:0014070,GO:0016020,GO:0016043,GO:0016569,GO:0016570,GO:0016575,GO:0016787,GO:0016810,GO:0016811,GO:0019213,GO:0019219,GO:0019222,GO:0019538,GO:0022402,GO:0030278,GO:0030279,GO:0030544,GO:0031056,GO:0031057,GO:0031072,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031647,GO:0031974,GO:0031981,GO:0032204,GO:0032268,GO:0032269,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033558,GO:0033993,GO:0035065,GO:0035067,GO:0035601,GO:0035690,GO:0035983,GO:0035984,GO:0036211,GO:0042221,GO:0042493,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045595,GO:0045596,GO:0045667,GO:0045668,GO:0045892,GO:0045934,GO:0046677,GO:0048519,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051093,GO:0051098,GO:0051101,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051276,GO:0051716,GO:0051726,GO:0051879,GO:0051983,GO:0060255,GO:0060341,GO:0061478,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071236,GO:0071310,GO:0071396,GO:0071407,GO:0071417,GO:0071495,GO:0071704,GO:0071840,GO:0071922,GO:0071944,GO:0080090,GO:0097305,GO:0097306,GO:0098732,GO:0098813,GO:0140096,GO:1901564,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901983,GO:1901984,GO:1902275,GO:1902494,GO:1902679,GO:1903320,GO:1903321,GO:1903506,GO:1903507,GO:1903827,GO:1904321,GO:1904322,GO:1905268,GO:1905634,GO:2000112,GO:2000113,GO:2000615,GO:2000616,GO:2000756,GO:2000757,GO:2001141,GO:2001251
Evalue	5.63e-71
EggNOG OGs	COG0123@1\|root,KOG1342@2759\|Eukaryota,39A51@33154\|Opisthokonta,3BHVW@33208\|Metazoa
EC	3.5.1.98
Description	negative regulation of histone H3-K9 acetylation
COG category	B
BRITE	ko00000,ko00001,ko01000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2840	Gcaud2840	Gracilaria caudata M_176_S67 male	gene	NODE_7_length_102599_cov_4.541909 44478..45553 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2840.t1	Gcaud2840.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_7_length_102599_cov_4.541909 44478..45553 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2840.t1.start1	Gcaud2840.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_7_length_102599_cov_4.541909 44478..44480 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2840.t1.CDS1	Gcaud2840.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_7_length_102599_cov_4.541909 44478..44769 +
Gcaud2840.t1.CDS2	Gcaud2840.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_7_length_102599_cov_4.541909 44847..45553 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2840.t1.exon1	Gcaud2840.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_7_length_102599_cov_4.541909 44478..44769 +
Gcaud2840.t1.exon2	Gcaud2840.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_7_length_102599_cov_4.541909 44847..45553 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2840.t1.intron1	Gcaud2840.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_7_length_102599_cov_4.541909 44770..44846 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2840.t1.stop1	Gcaud2840.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_7_length_102599_cov_4.541909 45551..45553 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_7_length_102599_cov_4.541909:44478..45553+
coding sequence from alignment at NODE_7_length_102599_cov_4.541909:44478..45553+

mRNA sequence

>Gcaud2840.t1 ID=Gcaud2840.t1|Name=Gcaud2840.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=333bp
LRASSARYPREIDEDLNFLELDDFDFGSEEEEQMLLEEVGLVDDCPAFPG
VWELALLTVGGAVVAALGLFTSHAKVACWFDGGRHHAMSDSAHGYCYLND
VVVACKVLLSQPGISRVLYVDIDIHHGDGVEETFLYDDGVTTVSFHLAER
GFYPGTGNDILPRQTPATCSALRVPLRRGIRNEAYIELFVKVMNTVKNFR
QPDVVVLQCGSDGVAGDPLGGFNLTGKAYSACVKHLLGWNIPVLILGGGG
YDPANSARVWTDVLQTCIEHVAKTNEQPDGLMHVTRDIPLHDDYFDLYGP
TFTRDIKPILMGNENTDESLGWISTCIKNMLS*

spliced messenger RNA

>Gcaud2840.t1 ID=Gcaud2840.t1|Name=Gcaud2840.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=999bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:44478..45553+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCGCGCTTCTTCTGCCCGATATCCCCGCGAAATAGATGAGGACCTGAA
CTTTTTGGAACTCGACGATTTCGACTTTGGAAGTGAAGAGGAAGAACAGA
TGCTACTGGAAGAAGTTGGACTCGTCGACGACTGTCCAGCTTTTCCTGGC
GTTTGGGAACTTGCGTTACTCACTGTTGGGGGGGCAGTAGTTGCTGCTCT
GGGACTCTTTACCAGTCACGCTAAGGTCGCGTGTTGGTTCGACGGAGGTC
GCCACCATGCTATGTCTGATTCTGCGCACGGATATTGCTATTTGAATGAT
GTGGTCGTCGCTTGCAAGGTTCTACTTTCTCAACCAGGAATCTCTCGCGT
ACTATACGTCGACATAGATATTCACCACGGAGACGGAGTAGAAGAAACGT
TTCTCTACGACGATGGGGTCACAACCGTTTCATTTCATCTAGCCGAGAGA
GGATTCTATCCAGGAACTGGTAATGATATTCTGCCAAGGCAGACTCCAGC
AACTTGCAGTGCACTTCGTGTTCCTCTTCGTCGCGGAATCAGAAATGAAG
CCTACATAGAACTATTTGTCAAAGTTATGAACACGGTTAAAAATTTTCGA
CAGCCAGATGTTGTCGTTCTCCAGTGCGGCAGTGATGGTGTAGCAGGCGA
TCCATTAGGTGGTTTCAATTTGACTGGCAAAGCTTATAGTGCGTGCGTGA
AACACCTACTTGGCTGGAATATTCCCGTTTTAATCCTAGGAGGTGGGGGT
TATGACCCTGCGAATTCTGCAAGAGTATGGACAGATGTGCTGCAAACATG
CATTGAACATGTTGCGAAAACGAATGAACAGCCAGATGGCCTAATGCATG
TCACCCGGGACATACCATTACATGACGATTACTTCGATCTCTACGGACCT
ACTTTCACTAGAGACATTAAGCCGATCCTCATGGGTAACGAGAACACAGA
TGAATCTTTGGGATGGATCTCCACTTGCATAAAGAATATGCTCTCGTGA

protein sequence of Gcaud2840.t1

>Gcaud2840.t1 ID=Gcaud2840.t1|Name=Gcaud2840.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=333bp
LRASSARYPREIDEDLNFLELDDFDFGSEEEEQMLLEEVGLVDDCPAFPG
VWELALLTVGGAVVAALGLFTSHAKVACWFDGGRHHAMSDSAHGYCYLND
VVVACKVLLSQPGISRVLYVDIDIHHGDGVEETFLYDDGVTTVSFHLAER
GFYPGTGNDILPRQTPATCSALRVPLRRGIRNEAYIELFVKVMNTVKNFR
QPDVVVLQCGSDGVAGDPLGGFNLTGKAYSACVKHLLGWNIPVLILGGGG
YDPANSARVWTDVLQTCIEHVAKTNEQPDGLMHVTRDIPLHDDYFDLYGP
TFTRDIKPILMGNENTDESLGWISTCIKNMLS*

mRNA from alignment at NODE_7_length_102599_cov_4.541909:44478..45553+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2840.t1 ID=Gcaud2840.t1|Name=Gcaud2840.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1076bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:44478..45553+ (Gracilaria caudata M_176_S67 male)
CTGCGCGCTTCTTCTGCCCGATATCCCCGCGAAATAGATGAGGACCTGAA
CTTTTTGGAACTCGACGATTTCGACTTTGGAAGTGAAGAGGAAGAACAGA
TGCTACTGGAAGAAGTTGGACTCGTCGACGACTGTCCAGCTTTTCCTGGC
GTTTGGGAACTTGCGTTACTCACTGTTGGGGGGGCAGTAGTTGCTGCTCT
GGGACTCTTTACCAGTCACGCTAAGGTCGCGTGTTGGTTCGACGGAGGTC
GCCACCATGCTATGTCTGATTCTGCGCACGGATATTGCTATTGTAATGAT
TAGCACCTTTCTTTCACGACAACGCTGCAGAATTCCACCTCGTACTAACC
GTCTCTCTGAGAATTTCAGTGAATGATGTGGTCGTCGCTTGCAAGGTTCT
ACTTTCTCAACCAGGAATCTCTCGCGTACTATACGTCGACATAGATATTC
ACCACGGAGACGGAGTAGAAGAAACGTTTCTCTACGACGATGGGGTCACA
ACCGTTTCATTTCATCTAGCCGAGAGAGGATTCTATCCAGGAACTGGTAA
TGATATTCTGCCAAGGCAGACTCCAGCAACTTGCAGTGCACTTCGTGTTC
CTCTTCGTCGCGGAATCAGAAATGAAGCCTACATAGAACTATTTGTCAAA
GTTATGAACACGGTTAAAAATTTTCGACAGCCAGATGTTGTCGTTCTCCA
GTGCGGCAGTGATGGTGTAGCAGGCGATCCATTAGGTGGTTTCAATTTGA
CTGGCAAAGCTTATAGTGCGTGCGTGAAACACCTACTTGGCTGGAATATT
CCCGTTTTAATCCTAGGAGGTGGGGGTTATGACCCTGCGAATTCTGCAAG
AGTATGGACAGATGTGCTGCAAACATGCATTGAACATGTTGCGAAAACGA
ATGAACAGCCAGATGGCCTAATGCATGTCACCCGGGACATACCATTACAT
GACGATTACTTCGATCTCTACGGACCTACTTTCACTAGAGACATTAAGCC
GATCCTCATGGGTAACGAGAACACAGATGAATCTTTGGGATGGATCTCCA
CTTGCATAAAGAATATGCTCTCGTGA

Coding sequence (CDS) from alignment at NODE_7_length_102599_cov_4.541909:44478..45553+

>Gcaud2840.t1 ID=Gcaud2840.t1|Name=Gcaud2840.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=999bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:44478..45553+ (Gracilaria caudata M_176_S67 male)
CTGCGCGCTTCTTCTGCCCGATATCCCCGCGAAATAGATGAGGACCTGAA
CTTTTTGGAACTCGACGATTTCGACTTTGGAAGTGAAGAGGAAGAACAGA
TGCTACTGGAAGAAGTTGGACTCGTCGACGACTGTCCAGCTTTTCCTGGC
GTTTGGGAACTTGCGTTACTCACTGTTGGGGGGGCAGTAGTTGCTGCTCT
GGGACTCTTTACCAGTCACGCTAAGGTCGCGTGTTGGTTCGACGGAGGTC
GCCACCATGCTATGTCTGATTCTGCGCACGGATATTGCTATTTGAATGAT
GTGGTCGTCGCTTGCAAGGTTCTACTTTCTCAACCAGGAATCTCTCGCGT
ACTATACGTCGACATAGATATTCACCACGGAGACGGAGTAGAAGAAACGT
TTCTCTACGACGATGGGGTCACAACCGTTTCATTTCATCTAGCCGAGAGA
GGATTCTATCCAGGAACTGGTAATGATATTCTGCCAAGGCAGACTCCAGC
AACTTGCAGTGCACTTCGTGTTCCTCTTCGTCGCGGAATCAGAAATGAAG
CCTACATAGAACTATTTGTCAAAGTTATGAACACGGTTAAAAATTTTCGA
CAGCCAGATGTTGTCGTTCTCCAGTGCGGCAGTGATGGTGTAGCAGGCGA
TCCATTAGGTGGTTTCAATTTGACTGGCAAAGCTTATAGTGCGTGCGTGA
AACACCTACTTGGCTGGAATATTCCCGTTTTAATCCTAGGAGGTGGGGGT
TATGACCCTGCGAATTCTGCAAGAGTATGGACAGATGTGCTGCAAACATG
CATTGAACATGTTGCGAAAACGAATGAACAGCCAGATGGCCTAATGCATG
TCACCCGGGACATACCATTACATGACGATTACTTCGATCTCTACGGACCT
ACTTTCACTAGAGACATTAAGCCGATCCTCATGGGTAACGAGAACACAGA
TGAATCTTTGGGATGGATCTCCACTTGCATAAAGAATATGCTCTCGTGA