Gcaud2834.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2834.t1
Unique Name	Gcaud2834.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	335

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_7_length_102599_cov_4.541909	contig	NODE_7_length_102599_cov_4.541909:28818..29949 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5911.EAR89739
PFAMs	Ank_2,Ank_3,Ank_4,HET,NACHT,NACHT_N
Max annot lvl	2759\|Eukaryota
Evalue	0.000452
EggNOG OGs	COG0666@1\|root,KOG4177@2759\|Eukaryota
Description	spectrin binding
COG category	I

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2834	Gcaud2834	Gracilaria caudata M_176_S67 male	gene	NODE_7_length_102599_cov_4.541909 28818..29949 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2834.t1	Gcaud2834.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_7_length_102599_cov_4.541909 28818..29949 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2834.t1.start1	Gcaud2834.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_7_length_102599_cov_4.541909 28818..28820 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2834.t1.CDS1	Gcaud2834.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_7_length_102599_cov_4.541909 28818..28881 +
Gcaud2834.t1.CDS2	Gcaud2834.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_7_length_102599_cov_4.541909 29009..29949 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2834.t1.exon1	Gcaud2834.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_7_length_102599_cov_4.541909 28818..28881 +
Gcaud2834.t1.exon2	Gcaud2834.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_7_length_102599_cov_4.541909 29009..29949 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2834.t1.intron1	Gcaud2834.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_7_length_102599_cov_4.541909 28882..29008 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2834.t1.stop1	Gcaud2834.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_7_length_102599_cov_4.541909 29947..29949 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_7_length_102599_cov_4.541909:28818..29949+
coding sequence from alignment at NODE_7_length_102599_cov_4.541909:28818..29949+

mRNA sequence

>Gcaud2834.t1 ID=Gcaud2834.t1|Name=Gcaud2834.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=335bp
MIVRPESDGPPSLTDYMDPTIHFVHVTFGPLLDPSQVKEALAEQLKCERI
LARSVDKKGSSDVVEIIFLKSNDPCAFGFGSATESVMVDISTALEKAASS
AAREALGQLATPDVCTFFIYAHTPGGSDAARRGFRAVSPDVIAYGGPALA
VDGSWSLWSESDVTVDPEDEQKVFCVAVCGSLSYLMSAVIKNWVQPTYTE
ALSYLKPKYVGDAEMDLLVAIRYNDWKKFKWCIEEENVHVDFKWTHKQNQ
TPLLAACARLRTKMVSYLLSRGVNASHRNDSGYTAVMYTKMLSDYDEKLV
RKQLTMLGNAGVEMKLNDSELCKIQRVVRGRIIE*

spliced messenger RNA

>Gcaud2834.t1 ID=Gcaud2834.t1|Name=Gcaud2834.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:28818..29949+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGTGAGACCGGAATCTGACGGACCTCCCTCGCTCACCGATTACAT
GGATCCCACAATTCATTTTGTTCACGTCACGTTTGGACCGTTGCTAGATC
CAAGTCAGGTCAAGGAGGCCCTCGCCGAGCAATTGAAATGTGAGCGCATA
CTCGCCAGGTCAGTTGACAAGAAGGGCTCATCAGACGTGGTGGAGATCAT
ATTTCTCAAGAGCAATGATCCATGTGCGTTTGGATTCGGGAGTGCAACTG
AATCTGTTATGGTGGACATCAGCACAGCTCTCGAGAAAGCGGCCAGCAGC
GCCGCACGTGAAGCGCTGGGACAACTTGCCACGCCCGACGTCTGTACGTT
TTTTATCTATGCCCATACACCAGGAGGATCTGATGCAGCTCGACGCGGTT
TTAGAGCAGTTAGCCCTGATGTCATCGCTTATGGGGGCCCGGCGCTGGCT
GTAGATGGAAGCTGGAGCTTGTGGAGTGAGAGTGACGTCACTGTCGATCC
TGAAGATGAACAGAAAGTTTTTTGTGTCGCAGTTTGTGGATCCCTATCGT
ATTTAATGTCTGCAGTTATTAAAAACTGGGTGCAACCAACATATACAGAA
GCACTTTCGTACTTGAAACCTAAGTACGTCGGGGATGCAGAAATGGATCT
GCTTGTTGCCATTCGTTACAATGACTGGAAGAAATTCAAATGGTGCATCG
AGGAAGAAAACGTTCATGTTGACTTCAAATGGACTCACAAACAGAATCAA
ACTCCTCTCCTTGCGGCTTGTGCCAGGTTGAGAACAAAAATGGTGAGCTA
TTTATTGAGCAGAGGAGTCAACGCTTCGCATCGAAATGATAGCGGCTACA
CGGCAGTGATGTACACCAAAATGCTTTCGGATTACGATGAAAAACTCGTC
CGAAAACAATTAACCATGCTGGGGAATGCGGGAGTTGAGATGAAACTCAA
CGATAGTGAATTGTGCAAGATTCAAAGGGTTGTACGGGGACGTATTATTG
AGTAG

protein sequence of Gcaud2834.t1

>Gcaud2834.t1 ID=Gcaud2834.t1|Name=Gcaud2834.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=335bp
MIVRPESDGPPSLTDYMDPTIHFVHVTFGPLLDPSQVKEALAEQLKCERI
LARSVDKKGSSDVVEIIFLKSNDPCAFGFGSATESVMVDISTALEKAASS
AAREALGQLATPDVCTFFIYAHTPGGSDAARRGFRAVSPDVIAYGGPALA
VDGSWSLWSESDVTVDPEDEQKVFCVAVCGSLSYLMSAVIKNWVQPTYTE
ALSYLKPKYVGDAEMDLLVAIRYNDWKKFKWCIEEENVHVDFKWTHKQNQ
TPLLAACARLRTKMVSYLLSRGVNASHRNDSGYTAVMYTKMLSDYDEKLV
RKQLTMLGNAGVEMKLNDSELCKIQRVVRGRIIE*

mRNA from alignment at NODE_7_length_102599_cov_4.541909:28818..29949+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2834.t1 ID=Gcaud2834.t1|Name=Gcaud2834.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1132bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:28818..29949+ (Gracilaria caudata M_176_S67 male)
ATGATCGTGAGACCGGAATCTGACGGACCTCCCTCGCTCACCGATTACAT
GGATCCCACAATTCGTGAAAAAGGAAAACACGGAGAGCCGATCACCATAG
CCACCGGAAGAGCAAGTCTGAAGGATGGCAACTCTTACGAAGCTACAGAG
CTTGCCATAGAAACAGAAAAAAACCAACAGACCTGACCCAGATTTTGTTC
ACGTCACGTTTGGACCGTTGCTAGATCCAAGTCAGGTCAAGGAGGCCCTC
GCCGAGCAATTGAAATGTGAGCGCATACTCGCCAGGTCAGTTGACAAGAA
GGGCTCATCAGACGTGGTGGAGATCATATTTCTCAAGAGCAATGATCCAT
GTGCGTTTGGATTCGGGAGTGCAACTGAATCTGTTATGGTGGACATCAGC
ACAGCTCTCGAGAAAGCGGCCAGCAGCGCCGCACGTGAAGCGCTGGGACA
ACTTGCCACGCCCGACGTCTGTACGTTTTTTATCTATGCCCATACACCAG
GAGGATCTGATGCAGCTCGACGCGGTTTTAGAGCAGTTAGCCCTGATGTC
ATCGCTTATGGGGGCCCGGCGCTGGCTGTAGATGGAAGCTGGAGCTTGTG
GAGTGAGAGTGACGTCACTGTCGATCCTGAAGATGAACAGAAAGTTTTTT
GTGTCGCAGTTTGTGGATCCCTATCGTATTTAATGTCTGCAGTTATTAAA
AACTGGGTGCAACCAACATATACAGAAGCACTTTCGTACTTGAAACCTAA
GTACGTCGGGGATGCAGAAATGGATCTGCTTGTTGCCATTCGTTACAATG
ACTGGAAGAAATTCAAATGGTGCATCGAGGAAGAAAACGTTCATGTTGAC
TTCAAATGGACTCACAAACAGAATCAAACTCCTCTCCTTGCGGCTTGTGC
CAGGTTGAGAACAAAAATGGTGAGCTATTTATTGAGCAGAGGAGTCAACG
CTTCGCATCGAAATGATAGCGGCTACACGGCAGTGATGTACACCAAAATG
CTTTCGGATTACGATGAAAAACTCGTCCGAAAACAATTAACCATGCTGGG
GAATGCGGGAGTTGAGATGAAACTCAACGATAGTGAATTGTGCAAGATTC
AAAGGGTTGTACGGGGACGTATTATTGAGTAG

Coding sequence (CDS) from alignment at NODE_7_length_102599_cov_4.541909:28818..29949+

>Gcaud2834.t1 ID=Gcaud2834.t1|Name=Gcaud2834.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1005bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:28818..29949+ (Gracilaria caudata M_176_S67 male)
ATGATCGTGAGACCGGAATCTGACGGACCTCCCTCGCTCACCGATTACAT
GGATCCCACAATTCATTTTGTTCACGTCACGTTTGGACCGTTGCTAGATC
CAAGTCAGGTCAAGGAGGCCCTCGCCGAGCAATTGAAATGTGAGCGCATA
CTCGCCAGGTCAGTTGACAAGAAGGGCTCATCAGACGTGGTGGAGATCAT
ATTTCTCAAGAGCAATGATCCATGTGCGTTTGGATTCGGGAGTGCAACTG
AATCTGTTATGGTGGACATCAGCACAGCTCTCGAGAAAGCGGCCAGCAGC
GCCGCACGTGAAGCGCTGGGACAACTTGCCACGCCCGACGTCTGTACGTT
TTTTATCTATGCCCATACACCAGGAGGATCTGATGCAGCTCGACGCGGTT
TTAGAGCAGTTAGCCCTGATGTCATCGCTTATGGGGGCCCGGCGCTGGCT
GTAGATGGAAGCTGGAGCTTGTGGAGTGAGAGTGACGTCACTGTCGATCC
TGAAGATGAACAGAAAGTTTTTTGTGTCGCAGTTTGTGGATCCCTATCGT
ATTTAATGTCTGCAGTTATTAAAAACTGGGTGCAACCAACATATACAGAA
GCACTTTCGTACTTGAAACCTAAGTACGTCGGGGATGCAGAAATGGATCT
GCTTGTTGCCATTCGTTACAATGACTGGAAGAAATTCAAATGGTGCATCG
AGGAAGAAAACGTTCATGTTGACTTCAAATGGACTCACAAACAGAATCAA
ACTCCTCTCCTTGCGGCTTGTGCCAGGTTGAGAACAAAAATGGTGAGCTA
TTTATTGAGCAGAGGAGTCAACGCTTCGCATCGAAATGATAGCGGCTACA
CGGCAGTGATGTACACCAAAATGCTTTCGGATTACGATGAAAAACTCGTC
CGAAAACAATTAACCATGCTGGGGAATGCGGGAGTTGAGATGAAACTCAA
CGATAGTGAATTGTGCAAGATTCAAAGGGTTGTACGGGGACGTATTATTG
AGTAG