Gcaud2831.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2831.t1
Unique Name	Gcaud2831.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	532

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_7_length_102599_cov_4.541909	contig	NODE_7_length_102599_cov_4.541909:21587..23341 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707958.1
Preferred name	ASNSD1
PFAMs	Asn_synthase,GATase_7
Max annot lvl	2759\|Eukaryota
GOs	GO:0003674,GO:0003824,GO:0004066,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006528,GO:0006529,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0032787,GO:0034641,GO:0042802,GO:0042803,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046983,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue	1.52e-83
EggNOG OGs	COG0367@1\|root,KOG0573@2759\|Eukaryota
Description	asparagine synthase (glutamine-hydrolyzing) activity
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2831	Gcaud2831	Gracilaria caudata M_176_S67 male	gene	NODE_7_length_102599_cov_4.541909 21587..23341 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2831.t1	Gcaud2831.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_7_length_102599_cov_4.541909 21587..23341 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2831.t1.start1	Gcaud2831.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_7_length_102599_cov_4.541909 21587..21589 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2831.t1.CDS1	Gcaud2831.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_7_length_102599_cov_4.541909 21587..22320 +
Gcaud2831.t1.CDS2	Gcaud2831.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_7_length_102599_cov_4.541909 22409..22414 +
Gcaud2831.t1.CDS3	Gcaud2831.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_7_length_102599_cov_4.541909 22486..23341 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2831.t1.exon1	Gcaud2831.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_7_length_102599_cov_4.541909 21587..22320 +
Gcaud2831.t1.exon2	Gcaud2831.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_7_length_102599_cov_4.541909 22409..22414 +
Gcaud2831.t1.exon3	Gcaud2831.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_7_length_102599_cov_4.541909 22486..23341 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2831.t1.intron1	Gcaud2831.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_7_length_102599_cov_4.541909 22321..22408 +
Gcaud2831.t1.intron2	Gcaud2831.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_7_length_102599_cov_4.541909 22415..22485 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2831.t1.stop1	Gcaud2831.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_7_length_102599_cov_4.541909 23339..23341 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_7_length_102599_cov_4.541909:21587..23341+
coding sequence from alignment at NODE_7_length_102599_cov_4.541909:21587..23341+

mRNA sequence

>Gcaud2831.t1 ID=Gcaud2831.t1|Name=Gcaud2831.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=532bp
MCGIYAELIHTDIPSLPGWKFWTGTTQQLSSTSEVSNSPRYKAVRRALDR
RGPDFQSTDVFTVDESCTLQMIQTTLSLRGSKNRADSLKGKNRLLFNGEL
YGGIPVGEDDSDTQSLFEHLNARTSTHPLIPEILDGLKGPWTIIYWHAMT
KRLYFARDCIGRRSLLMKVIPGKKLILSSVSPEPHATGFVEVPPAGVAYI
DVSDAPKFGLYERESHSVIPWRASSLLKCNKGNEVGLLSGSDISIDSFAV
LFSGGIDSMFLSVILESCLPEKEPLQLITVAFGRDTESINQCPDRITALH
GFHELQEMCSGRRTVELLCVDVFPEQADNVFENSVRRLLHPCDQLMDASI
GTAIWLASKGVGYKIVSGKESSGEITQTSARVLFSGLGADELMGGYKGRH
RTIFRSEGIDGILREMDADFSRLWFRNLGRDDRLIADHGREVRHPFLDED
LVEFITQLPLKEHVCDLSKPDGVGDKHLLRRAARMVGVSEAAASRSKRAI
QFGSRSRHVLERKKRGSDRQPNALQNNDLCG*

spliced messenger RNA

>Gcaud2831.t1 ID=Gcaud2831.t1|Name=Gcaud2831.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1596bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:21587..23341+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGGAATATATGCAGAGTTGATTCATACCGACATTCCTTCCTTGCC
AGGATGGAAGTTCTGGACAGGCACCACCCAGCAGTTGAGTAGCACTTCAG
AAGTTTCGAATTCACCACGTTATAAAGCGGTCCGACGTGCATTGGATCGA
CGTGGACCAGATTTTCAAAGCACAGATGTCTTTACCGTAGATGAATCATG
TACCTTACAAATGATTCAAACTACTCTCTCTCTTCGCGGATCTAAGAACA
GAGCAGACTCGTTGAAAGGCAAAAACAGACTTCTATTCAACGGGGAATTG
TACGGTGGAATACCTGTGGGTGAAGACGATTCTGACACTCAAAGTCTTTT
TGAGCACTTGAATGCCAGAACCTCGACACATCCATTAATCCCAGAGATCT
TGGATGGACTGAAGGGTCCATGGACAATTATTTACTGGCATGCCATGACT
AAACGGCTGTACTTTGCTAGGGATTGCATCGGACGACGGTCACTGCTTAT
GAAAGTGATCCCGGGGAAAAAGCTCATCTTGAGCTCGGTGTCCCCAGAAC
CACATGCTACGGGGTTTGTTGAAGTTCCTCCGGCCGGGGTGGCGTACATC
GATGTTTCTGATGCACCAAAATTTGGACTGTACGAGAGAGAATCTCATTC
TGTTATACCTTGGCGTGCTTCATCTTTGCTTAAATGCAATAAAGGCAATG
AAGTTGGTTTACTCAGTGGAAGCGATATCAGCATAGATTCGTTCGCTGTT
CTTTTCTCTGGTGGAATCGATTCTATGTTCCTGTCTGTCATCCTCGAATC
CTGTCTCCCCGAAAAAGAACCGCTACAACTCATAACTGTTGCGTTTGGTA
GAGATACAGAATCCATCAACCAGTGTCCGGATCGCATCACAGCCTTGCAC
GGATTTCATGAGCTGCAAGAGATGTGCTCTGGAAGGAGAACAGTGGAATT
ATTATGTGTAGATGTATTTCCTGAGCAAGCAGACAATGTGTTCGAAAACA
GTGTGCGTCGTCTTTTACATCCCTGTGACCAGCTCATGGATGCCTCTATA
GGTACTGCTATTTGGCTCGCGTCCAAGGGAGTTGGATACAAAATTGTCAG
TGGCAAGGAAAGCTCTGGTGAAATCACCCAAACTTCGGCAAGAGTCTTGT
TTAGCGGCCTTGGCGCCGATGAGCTGATGGGCGGATACAAAGGTCGGCAT
CGCACAATTTTCCGAAGCGAAGGCATAGACGGTATTCTTCGAGAGATGGA
CGCCGATTTTAGCAGGTTGTGGTTTCGAAACCTAGGACGTGATGATCGAC
TTATCGCGGATCATGGAAGGGAGGTACGTCACCCCTTCCTTGATGAAGAT
CTGGTGGAGTTCATCACACAATTACCGTTAAAGGAACATGTCTGTGATCT
CTCGAAGCCCGATGGAGTTGGTGATAAACATTTGCTTCGAAGAGCTGCAA
GAATGGTCGGAGTTTCGGAGGCCGCTGCATCGCGTAGTAAGCGAGCGATA
CAATTTGGATCGAGAAGTCGACACGTTCTCGAAAGGAAGAAAAGAGGCTC
AGACCGCCAACCAAATGCTCTTCAAAACAACGACCTCTGTGGGTAG

protein sequence of Gcaud2831.t1

>Gcaud2831.t1 ID=Gcaud2831.t1|Name=Gcaud2831.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=532bp
MCGIYAELIHTDIPSLPGWKFWTGTTQQLSSTSEVSNSPRYKAVRRALDR
RGPDFQSTDVFTVDESCTLQMIQTTLSLRGSKNRADSLKGKNRLLFNGEL
YGGIPVGEDDSDTQSLFEHLNARTSTHPLIPEILDGLKGPWTIIYWHAMT
KRLYFARDCIGRRSLLMKVIPGKKLILSSVSPEPHATGFVEVPPAGVAYI
DVSDAPKFGLYERESHSVIPWRASSLLKCNKGNEVGLLSGSDISIDSFAV
LFSGGIDSMFLSVILESCLPEKEPLQLITVAFGRDTESINQCPDRITALH
GFHELQEMCSGRRTVELLCVDVFPEQADNVFENSVRRLLHPCDQLMDASI
GTAIWLASKGVGYKIVSGKESSGEITQTSARVLFSGLGADELMGGYKGRH
RTIFRSEGIDGILREMDADFSRLWFRNLGRDDRLIADHGREVRHPFLDED
LVEFITQLPLKEHVCDLSKPDGVGDKHLLRRAARMVGVSEAAASRSKRAI
QFGSRSRHVLERKKRGSDRQPNALQNNDLCG*

mRNA from alignment at NODE_7_length_102599_cov_4.541909:21587..23341+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2831.t1 ID=Gcaud2831.t1|Name=Gcaud2831.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1755bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:21587..23341+ (Gracilaria caudata M_176_S67 male)
ATGTGTGGAATATATGCAGAGTTGATTCATACCGACATTCCTTCCTTGCC
AGGATGGAAGTTCTGGACAGGCACCACCCAGCAGTTGAGTAGCACTTCAG
AAGTTTCGAATTCACCACGTTATAAAGCGGTCCGACGTGCATTGGATCGA
CGTGGACCAGATTTTCAAAGCACAGATGTCTTTACCGTAGATGAATCATG
TACCTTACAAATGATTCAAACTACTCTCTCTCTTCGCGGATCTAAGAACA
GAGCAGACTCGTTGAAAGGCAAAAACAGACTTCTATTCAACGGGGAATTG
TACGGTGGAATACCTGTGGGTGAAGACGATTCTGACACTCAAAGTCTTTT
TGAGCACTTGAATGCCAGAACCTCGACACATCCATTAATCCCAGAGATCT
TGGATGGACTGAAGGGTCCATGGACAATTATTTACTGGCATGCCATGACT
AAACGGCTGTACTTTGCTAGGGATTGCATCGGACGACGGTCACTGCTTAT
GAAAGTGATCCCGGGGAAAAAGCTCATCTTGAGCTCGGTGTCCCCAGAAC
CACATGCTACGGGGTTTGTTGAAGTTCCTCCGGCCGGGGTGGCGTACATC
GATGTTTCTGATGCACCAAAATTTGGACTGTACGAGAGAGAATCTCATTC
TGTTATACCTTGGCGTGCTTCATCTTTGCTTAAATGCAATAAAGGCAATG
AAGTTGGTTTACTCAGTGGAAGCGATATCAGCATGTACGTTTCTTTTCTT
CCAAAAGAATGGCTACGAAGCAAAGTACAGCAAACCTACGCCAAACCACT
GACACAACCAGAGTCCGCGCAGAGATTCGTTGCTCTTTTCAAGCAAAGTA
TCAGGAGACGTATGGTGATCAATATACCACCAAATCACAACCTGCCCAGG
TTCGCTGTTCTTTTCTCTGGTGGAATCGATTCTATGTTCCTGTCTGTCAT
CCTCGAATCCTGTCTCCCCGAAAAAGAACCGCTACAACTCATAACTGTTG
CGTTTGGTAGAGATACAGAATCCATCAACCAGTGTCCGGATCGCATCACA
GCCTTGCACGGATTTCATGAGCTGCAAGAGATGTGCTCTGGAAGGAGAAC
AGTGGAATTATTATGTGTAGATGTATTTCCTGAGCAAGCAGACAATGTGT
TCGAAAACAGTGTGCGTCGTCTTTTACATCCCTGTGACCAGCTCATGGAT
GCCTCTATAGGTACTGCTATTTGGCTCGCGTCCAAGGGAGTTGGATACAA
AATTGTCAGTGGCAAGGAAAGCTCTGGTGAAATCACCCAAACTTCGGCAA
GAGTCTTGTTTAGCGGCCTTGGCGCCGATGAGCTGATGGGCGGATACAAA
GGTCGGCATCGCACAATTTTCCGAAGCGAAGGCATAGACGGTATTCTTCG
AGAGATGGACGCCGATTTTAGCAGGTTGTGGTTTCGAAACCTAGGACGTG
ATGATCGACTTATCGCGGATCATGGAAGGGAGGTACGTCACCCCTTCCTT
GATGAAGATCTGGTGGAGTTCATCACACAATTACCGTTAAAGGAACATGT
CTGTGATCTCTCGAAGCCCGATGGAGTTGGTGATAAACATTTGCTTCGAA
GAGCTGCAAGAATGGTCGGAGTTTCGGAGGCCGCTGCATCGCGTAGTAAG
CGAGCGATACAATTTGGATCGAGAAGTCGACACGTTCTCGAAAGGAAGAA
AAGAGGCTCAGACCGCCAACCAAATGCTCTTCAAAACAACGACCTCTGTG
GGTAG

Coding sequence (CDS) from alignment at NODE_7_length_102599_cov_4.541909:21587..23341+

>Gcaud2831.t1 ID=Gcaud2831.t1|Name=Gcaud2831.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1596bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:21587..23341+ (Gracilaria caudata M_176_S67 male)
ATGTGTGGAATATATGCAGAGTTGATTCATACCGACATTCCTTCCTTGCC
AGGATGGAAGTTCTGGACAGGCACCACCCAGCAGTTGAGTAGCACTTCAG
AAGTTTCGAATTCACCACGTTATAAAGCGGTCCGACGTGCATTGGATCGA
CGTGGACCAGATTTTCAAAGCACAGATGTCTTTACCGTAGATGAATCATG
TACCTTACAAATGATTCAAACTACTCTCTCTCTTCGCGGATCTAAGAACA
GAGCAGACTCGTTGAAAGGCAAAAACAGACTTCTATTCAACGGGGAATTG
TACGGTGGAATACCTGTGGGTGAAGACGATTCTGACACTCAAAGTCTTTT
TGAGCACTTGAATGCCAGAACCTCGACACATCCATTAATCCCAGAGATCT
TGGATGGACTGAAGGGTCCATGGACAATTATTTACTGGCATGCCATGACT
AAACGGCTGTACTTTGCTAGGGATTGCATCGGACGACGGTCACTGCTTAT
GAAAGTGATCCCGGGGAAAAAGCTCATCTTGAGCTCGGTGTCCCCAGAAC
CACATGCTACGGGGTTTGTTGAAGTTCCTCCGGCCGGGGTGGCGTACATC
GATGTTTCTGATGCACCAAAATTTGGACTGTACGAGAGAGAATCTCATTC
TGTTATACCTTGGCGTGCTTCATCTTTGCTTAAATGCAATAAAGGCAATG
AAGTTGGTTTACTCAGTGGAAGCGATATCAGCATAGATTCGTTCGCTGTT
CTTTTCTCTGGTGGAATCGATTCTATGTTCCTGTCTGTCATCCTCGAATC
CTGTCTCCCCGAAAAAGAACCGCTACAACTCATAACTGTTGCGTTTGGTA
GAGATACAGAATCCATCAACCAGTGTCCGGATCGCATCACAGCCTTGCAC
GGATTTCATGAGCTGCAAGAGATGTGCTCTGGAAGGAGAACAGTGGAATT
ATTATGTGTAGATGTATTTCCTGAGCAAGCAGACAATGTGTTCGAAAACA
GTGTGCGTCGTCTTTTACATCCCTGTGACCAGCTCATGGATGCCTCTATA
GGTACTGCTATTTGGCTCGCGTCCAAGGGAGTTGGATACAAAATTGTCAG
TGGCAAGGAAAGCTCTGGTGAAATCACCCAAACTTCGGCAAGAGTCTTGT
TTAGCGGCCTTGGCGCCGATGAGCTGATGGGCGGATACAAAGGTCGGCAT
CGCACAATTTTCCGAAGCGAAGGCATAGACGGTATTCTTCGAGAGATGGA
CGCCGATTTTAGCAGGTTGTGGTTTCGAAACCTAGGACGTGATGATCGAC
TTATCGCGGATCATGGAAGGGAGGTACGTCACCCCTTCCTTGATGAAGAT
CTGGTGGAGTTCATCACACAATTACCGTTAAAGGAACATGTCTGTGATCT
CTCGAAGCCCGATGGAGTTGGTGATAAACATTTGCTTCGAAGAGCTGCAA
GAATGGTCGGAGTTTCGGAGGCCGCTGCATCGCGTAGTAAGCGAGCGATA
CAATTTGGATCGAGAAGTCGACACGTTCTCGAAAGGAAGAAAAGAGGCTC
AGACCGCCAACCAAATGCTCTTCAAAACAACGACCTCTGTGGGTAG