Gcaud283.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud283.t1
Unique Name	Gcaud283.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	652

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3874_length_2833_cov_6.371627	contig	NODE_3874_length_2833_cov_6.371627:519..2474 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMO046CT
Preferred name	TRRAP
PFAMs	FAT,FATC,PI3_PI4_kinase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08874
KEGG Pathway	ko05166,map05166
GOs	GO:0000123,GO:0000166,GO:0003674,GO:0003712,GO:0003824,GO:0004402,GO:0004672,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006464,GO:0006468,GO:0006473,GO:0006475,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008080,GO:0008144,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010556,GO:0016043,GO:0016301,GO:0016310,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016773,GO:0017076,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0030554,GO:0031248,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034212,GO:0034641,GO:0035267,GO:0035639,GO:0036094,GO:0036211,GO:0043167,GO:0043168,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051716,GO:0060255,GO:0061733,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140096,GO:0140110,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1903506,GO:1990234,GO:2001141
Evalue	3.31e-69
EggNOG OGs	COG5032@1\|root,KOG0889@2759\|Eukaryota
Description	internal peptidyl-lysine acetylation
COG category	BDLTU
BRITE	ko00000,ko00001,ko01001,ko03021,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud283	Gcaud283	Gracilaria caudata M_176_S67 male	gene	NODE_3874_length_2833_cov_6.371627 519..2474 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud283.t1.start1	Gcaud283.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3874_length_2833_cov_6.371627 519..521 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud283.t1.CDS1	Gcaud283.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3874_length_2833_cov_6.371627 519..2474 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud283.t1.exon1	Gcaud283.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3874_length_2833_cov_6.371627 519..2474 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud283.t1.stop1	Gcaud283.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_3874_length_2833_cov_6.371627 2472..2474 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud283.t1	Gcaud283.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3874_length_2833_cov_6.371627 519..2474 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3874_length_2833_cov_6.371627:519..2474+
coding sequence from alignment at NODE_3874_length_2833_cov_6.371627:519..2474+

mRNA sequence

>Gcaud283.t1 ID=Gcaud283.t1|Name=Gcaud283.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=652bp
MNDMSRNLNPSILYAATGIEEKEVFELFAQIFTVLDPPSFQDVFGSRIRE
LFEYVVENPAAITVPQHFLANSGVSKYFADILLNFLVDNIQELEMTGDIG
NKHDTDRRNRANALLKLFKIVFASVSLFPTNEPVLHLHLATIVRRSLKHA
SSSKDPVGFLQMLKALFKSINNDKNQAQFDILYWTFVPLLEHIYSSLLSL
AEGPCGSKHKDLLIELCLLVPARTSHAFPYLETLIKPIVWALEAENEISA
YGIRSLEFWVDILQPAYLDRLFVRVEPALTTALHKQLRRPRNPIGVEILR
VMGKLGSRSRIVRGMSIPFKYEKRAIDNLKIRLEWPGGVLANMEIETLVK
LTIDSLLCRRRLHQESSTVPYGLYSWRFLFSCLNPFLGQKNGREGSERNF
YALNISSRARSGTGSSHASSKSRSTISSETDLVKALLFGLVLSTSFLRAA
SVDQDSSAPFRSERSRMDEDMEGLCRYFALLTVQENTKSFHSHRDKVEMK
KSKHSTRKAPVCLSYTLFVDVLVEAMSQESQPHAETGLLWMKLYVANVVK
YCSQLQGGVESKEDGGQSDIQMKEAESNVPIEGVTMPNESSTSPLASLLK
QSDGTEDRVVIDPLSTSENYRLGKYRGLLRVVLKRMKSRTRWSNCLIHLL
H*

spliced messenger RNA

>Gcaud283.t1 ID=Gcaud283.t1|Name=Gcaud283.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1956bp|location=Sequence derived from alignment at NODE_3874_length_2833_cov_6.371627:519..2474+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGACATGTCGCGCAACCTGAACCCTTCTATCCTCTACGCAGCAAC
CGGAATTGAAGAGAAAGAAGTTTTTGAATTGTTCGCTCAGATCTTCACTG
TTTTGGACCCGCCGAGTTTTCAAGACGTCTTTGGTTCTAGAATACGCGAA
CTCTTCGAGTATGTCGTGGAGAATCCGGCCGCGATTACAGTCCCTCAGCA
TTTTCTTGCAAACAGCGGTGTATCAAAATACTTTGCCGACATTCTTCTCA
ACTTTTTAGTGGATAACATCCAGGAGTTGGAAATGACTGGGGATATTGGA
AACAAGCACGATACTGATCGCAGAAACCGTGCCAACGCGCTGCTCAAATT
ATTCAAGATTGTATTCGCAAGCGTGAGTCTGTTTCCTACAAATGAGCCCG
TTCTCCATTTGCACCTGGCGACGATTGTGAGAAGGTCTTTGAAGCACGCC
TCGTCTTCAAAAGACCCAGTTGGTTTCTTACAGATGCTGAAAGCATTATT
CAAGTCTATAAACAATGACAAGAACCAGGCACAATTTGATATCCTCTACT
GGACCTTTGTTCCGCTTTTGGAACACATATACAGCAGTCTATTATCACTT
GCCGAAGGTCCTTGCGGCTCGAAGCATAAGGATTTGTTGATCGAACTTTG
CCTCCTGGTGCCAGCTCGAACCTCCCACGCTTTTCCGTACCTCGAAACTT
TGATTAAGCCCATAGTATGGGCGTTGGAGGCAGAGAATGAGatatcggca
tatggaatacgatcattggagttctgggtagatatcttgcagccaGCTTA
TCTTGATCGGCTTTTCGTTCGGGTGGAACCTGCGCTCACTACGGCGCTGC
ACAAGCAGTTGAGACGACCCCGCAACCCAATAGGCGTGGAAATTCTTCGT
GTTATGGGGAAGCTGGGGTCTCGCTCGAGGATTGTGCGAGGGATGTCTAT
ACCGTTTAAGTACGAAAAAAGAGCGATCGATAACCTGAAGATCAGATTAG
AATGGCCGGGTGGAGTGCTTGCCAACATGGAAATTGAGACATTAGTGAAA
CTAACAATTGATTCCCTCTTGTGTCGTAGACGTTTACATCAAGAGTCATC
CACCGTTCCTTACGGACTTTACTCCTGGAGATTTTTGTTTTCATGTCTCA
ACCCATTTCTCGGACAAAAGAATGGAAGAGAAGGTTCCGAACGGAATTTC
TATGCTTTGAACATCTCAAGCCGTGCCCGTAGTGGAACAGGCTCGTCTCA
TGCGAGTTCCAAGTCCCGAAGCACAATTTCATCCGAAACGGACCTAGTCA
AGGCTCTTCTTTTTGGACTCGTCTTGTCGACGTCCTTTCTTCGTGCGGCG
AGTGTGGACCAGGACAGTTCAGCTCCATTTAGGAGCGAACGCTCGAGAAT
GGACGAAGATATGGAAGGGCTTTGTCGTTACTTTGCTCTCCTAACAGTAC
AGGAGAACACTAAATCTTTTCACTCCCATCGAGACAAAGTGGAAATGAAG
AAGTCGAAACATTCAACACGCAAGGCGCCCGTATGCCTATCGTACACTCT
CTTCGTTGATGTTCTTGTGGAGGCAATGTCTCAAGAATCTCAACCGCACG
CCGAAACTGGGCTTTTGTGGATGAAGCTCTACGTGGCGAACGTGGTAAAG
TACTGCTCCCAACTACAAGGCGGTGTGGAATCGAAAGAGGATGGAGGACA
AAGCGATATCCAAATGAAAGAAGCGGAAAGCAATGTTCCTATAGAAGGGG
TAACTATGCCCAATGAGAGTTCTACTTCACCCCTGGCTTCTTTGTTAAAG
CAGTCTGATGGGACGGAAGATCGAGTGGTTATTGATCCACTATCAACCTC
GGAGAATTATCGGCTTGGGAAGTACCGGGGGTTGCTGCGCGTAGTTCTGA
AGCGGATGAAAAGTCGCACAAGGTGGAGCAACTGTCTCATACATCTATTA
CACTGA

protein sequence of Gcaud283.t1

>Gcaud283.t1 ID=Gcaud283.t1|Name=Gcaud283.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=652bp
MNDMSRNLNPSILYAATGIEEKEVFELFAQIFTVLDPPSFQDVFGSRIRE
LFEYVVENPAAITVPQHFLANSGVSKYFADILLNFLVDNIQELEMTGDIG
NKHDTDRRNRANALLKLFKIVFASVSLFPTNEPVLHLHLATIVRRSLKHA
SSSKDPVGFLQMLKALFKSINNDKNQAQFDILYWTFVPLLEHIYSSLLSL
AEGPCGSKHKDLLIELCLLVPARTSHAFPYLETLIKPIVWALEAENEISA
YGIRSLEFWVDILQPAYLDRLFVRVEPALTTALHKQLRRPRNPIGVEILR
VMGKLGSRSRIVRGMSIPFKYEKRAIDNLKIRLEWPGGVLANMEIETLVK
LTIDSLLCRRRLHQESSTVPYGLYSWRFLFSCLNPFLGQKNGREGSERNF
YALNISSRARSGTGSSHASSKSRSTISSETDLVKALLFGLVLSTSFLRAA
SVDQDSSAPFRSERSRMDEDMEGLCRYFALLTVQENTKSFHSHRDKVEMK
KSKHSTRKAPVCLSYTLFVDVLVEAMSQESQPHAETGLLWMKLYVANVVK
YCSQLQGGVESKEDGGQSDIQMKEAESNVPIEGVTMPNESSTSPLASLLK
QSDGTEDRVVIDPLSTSENYRLGKYRGLLRVVLKRMKSRTRWSNCLIHLL
H*

mRNA from alignment at NODE_3874_length_2833_cov_6.371627:519..2474+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud283.t1 ID=Gcaud283.t1|Name=Gcaud283.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1956bp|location=Sequence derived from alignment at NODE_3874_length_2833_cov_6.371627:519..2474+ (Gracilaria caudata M_176_S67 male)
ATGAACGACATGTCGCGCAACCTGAACCCTTCTATCCTCTACGCAGCAAC
CGGAATTGAAGAGAAAGAAGTTTTTGAATTGTTCGCTCAGATCTTCACTG
TTTTGGACCCGCCGAGTTTTCAAGACGTCTTTGGTTCTAGAATACGCGAA
CTCTTCGAGTATGTCGTGGAGAATCCGGCCGCGATTACAGTCCCTCAGCA
TTTTCTTGCAAACAGCGGTGTATCAAAATACTTTGCCGACATTCTTCTCA
ACTTTTTAGTGGATAACATCCAGGAGTTGGAAATGACTGGGGATATTGGA
AACAAGCACGATACTGATCGCAGAAACCGTGCCAACGCGCTGCTCAAATT
ATTCAAGATTGTATTCGCAAGCGTGAGTCTGTTTCCTACAAATGAGCCCG
TTCTCCATTTGCACCTGGCGACGATTGTGAGAAGGTCTTTGAAGCACGCC
TCGTCTTCAAAAGACCCAGTTGGTTTCTTACAGATGCTGAAAGCATTATT
CAAGTCTATAAACAATGACAAGAACCAGGCACAATTTGATATCCTCTACT
GGACCTTTGTTCCGCTTTTGGAACACATATACAGCAGTCTATTATCACTT
GCCGAAGGTCCTTGCGGCTCGAAGCATAAGGATTTGTTGATCGAACTTTG
CCTCCTGGTGCCAGCTCGAACCTCCCACGCTTTTCCGTACCTCGAAACTT
TGATTAAGCCCATAGTATGGGCGTTGGAGGCAGAGAATGAGatatcggca
tatggaatacgatcattggagttctgggtagatatcttgcagccaGCTTA
TCTTGATCGGCTTTTCGTTCGGGTGGAACCTGCGCTCACTACGGCGCTGC
ACAAGCAGTTGAGACGACCCCGCAACCCAATAGGCGTGGAAATTCTTCGT
GTTATGGGGAAGCTGGGGTCTCGCTCGAGGATTGTGCGAGGGATGTCTAT
ACCGTTTAAGTACGAAAAAAGAGCGATCGATAACCTGAAGATCAGATTAG
AATGGCCGGGTGGAGTGCTTGCCAACATGGAAATTGAGACATTAGTGAAA
CTAACAATTGATTCCCTCTTGTGTCGTAGACGTTTACATCAAGAGTCATC
CACCGTTCCTTACGGACTTTACTCCTGGAGATTTTTGTTTTCATGTCTCA
ACCCATTTCTCGGACAAAAGAATGGAAGAGAAGGTTCCGAACGGAATTTC
TATGCTTTGAACATCTCAAGCCGTGCCCGTAGTGGAACAGGCTCGTCTCA
TGCGAGTTCCAAGTCCCGAAGCACAATTTCATCCGAAACGGACCTAGTCA
AGGCTCTTCTTTTTGGACTCGTCTTGTCGACGTCCTTTCTTCGTGCGGCG
AGTGTGGACCAGGACAGTTCAGCTCCATTTAGGAGCGAACGCTCGAGAAT
GGACGAAGATATGGAAGGGCTTTGTCGTTACTTTGCTCTCCTAACAGTAC
AGGAGAACACTAAATCTTTTCACTCCCATCGAGACAAAGTGGAAATGAAG
AAGTCGAAACATTCAACACGCAAGGCGCCCGTATGCCTATCGTACACTCT
CTTCGTTGATGTTCTTGTGGAGGCAATGTCTCAAGAATCTCAACCGCACG
CCGAAACTGGGCTTTTGTGGATGAAGCTCTACGTGGCGAACGTGGTAAAG
TACTGCTCCCAACTACAAGGCGGTGTGGAATCGAAAGAGGATGGAGGACA
AAGCGATATCCAAATGAAAGAAGCGGAAAGCAATGTTCCTATAGAAGGGG
TAACTATGCCCAATGAGAGTTCTACTTCACCCCTGGCTTCTTTGTTAAAG
CAGTCTGATGGGACGGAAGATCGAGTGGTTATTGATCCACTATCAACCTC
GGAGAATTATCGGCTTGGGAAGTACCGGGGGTTGCTGCGCGTAGTTCTGA
AGCGGATGAAAAGTCGCACAAGGTGGAGCAACTGTCTCATACATCTATTA
CACTGA

Coding sequence (CDS) from alignment at NODE_3874_length_2833_cov_6.371627:519..2474+

>Gcaud283.t1 ID=Gcaud283.t1|Name=Gcaud283.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1956bp|location=Sequence derived from alignment at NODE_3874_length_2833_cov_6.371627:519..2474+ (Gracilaria caudata M_176_S67 male)
ATGAACGACATGTCGCGCAACCTGAACCCTTCTATCCTCTACGCAGCAAC
CGGAATTGAAGAGAAAGAAGTTTTTGAATTGTTCGCTCAGATCTTCACTG
TTTTGGACCCGCCGAGTTTTCAAGACGTCTTTGGTTCTAGAATACGCGAA
CTCTTCGAGTATGTCGTGGAGAATCCGGCCGCGATTACAGTCCCTCAGCA
TTTTCTTGCAAACAGCGGTGTATCAAAATACTTTGCCGACATTCTTCTCA
ACTTTTTAGTGGATAACATCCAGGAGTTGGAAATGACTGGGGATATTGGA
AACAAGCACGATACTGATCGCAGAAACCGTGCCAACGCGCTGCTCAAATT
ATTCAAGATTGTATTCGCAAGCGTGAGTCTGTTTCCTACAAATGAGCCCG
TTCTCCATTTGCACCTGGCGACGATTGTGAGAAGGTCTTTGAAGCACGCC
TCGTCTTCAAAAGACCCAGTTGGTTTCTTACAGATGCTGAAAGCATTATT
CAAGTCTATAAACAATGACAAGAACCAGGCACAATTTGATATCCTCTACT
GGACCTTTGTTCCGCTTTTGGAACACATATACAGCAGTCTATTATCACTT
GCCGAAGGTCCTTGCGGCTCGAAGCATAAGGATTTGTTGATCGAACTTTG
CCTCCTGGTGCCAGCTCGAACCTCCCACGCTTTTCCGTACCTCGAAACTT
TGATTAAGCCCATAGTATGGGCGTTGGAGGCAGAGAATGAGatatcggca
tatggaatacgatcattggagttctgggtagatatcttgcagccaGCTTA
TCTTGATCGGCTTTTCGTTCGGGTGGAACCTGCGCTCACTACGGCGCTGC
ACAAGCAGTTGAGACGACCCCGCAACCCAATAGGCGTGGAAATTCTTCGT
GTTATGGGGAAGCTGGGGTCTCGCTCGAGGATTGTGCGAGGGATGTCTAT
ACCGTTTAAGTACGAAAAAAGAGCGATCGATAACCTGAAGATCAGATTAG
AATGGCCGGGTGGAGTGCTTGCCAACATGGAAATTGAGACATTAGTGAAA
CTAACAATTGATTCCCTCTTGTGTCGTAGACGTTTACATCAAGAGTCATC
CACCGTTCCTTACGGACTTTACTCCTGGAGATTTTTGTTTTCATGTCTCA
ACCCATTTCTCGGACAAAAGAATGGAAGAGAAGGTTCCGAACGGAATTTC
TATGCTTTGAACATCTCAAGCCGTGCCCGTAGTGGAACAGGCTCGTCTCA
TGCGAGTTCCAAGTCCCGAAGCACAATTTCATCCGAAACGGACCTAGTCA
AGGCTCTTCTTTTTGGACTCGTCTTGTCGACGTCCTTTCTTCGTGCGGCG
AGTGTGGACCAGGACAGTTCAGCTCCATTTAGGAGCGAACGCTCGAGAAT
GGACGAAGATATGGAAGGGCTTTGTCGTTACTTTGCTCTCCTAACAGTAC
AGGAGAACACTAAATCTTTTCACTCCCATCGAGACAAAGTGGAAATGAAG
AAGTCGAAACATTCAACACGCAAGGCGCCCGTATGCCTATCGTACACTCT
CTTCGTTGATGTTCTTGTGGAGGCAATGTCTCAAGAATCTCAACCGCACG
CCGAAACTGGGCTTTTGTGGATGAAGCTCTACGTGGCGAACGTGGTAAAG
TACTGCTCCCAACTACAAGGCGGTGTGGAATCGAAAGAGGATGGAGGACA
AAGCGATATCCAAATGAAAGAAGCGGAAAGCAATGTTCCTATAGAAGGGG
TAACTATGCCCAATGAGAGTTCTACTTCACCCCTGGCTTCTTTGTTAAAG
CAGTCTGATGGGACGGAAGATCGAGTGGTTATTGATCCACTATCAACCTC
GGAGAATTATCGGCTTGGGAAGTACCGGGGGTTGCTGCGCGTAGTTCTGA
AGCGGATGAAAAGTCGCACAAGGTGGAGCAACTGTCTCATACATCTATTA
CACTGA