Gcaud2829.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2829.t1
Unique NameGcaud2829.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length785
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_7_length_102599_cov_4.541909contigNODE_7_length_102599_cov_4.541909:17741..20095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4537.OPUNC02G29970.1
PFAMsCullin,Cullin_Nedd8
Max annot lvl35493|Streptophyta
KEGG koko:K03869
KEGG Pathwayko04120,ko04340,ko04341,map04120,map04340,map04341
KEGG ModuleM00384
GOsGO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009909,GO:0009911,GO:0019899,GO:0031461,GO:0031625,GO:0032991,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0048518,GO:0048580,GO:0048582,GO:0048831,GO:0050789,GO:0050793,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0065007,GO:1902494,GO:1990234,GO:2000026,GO:2000241,GO:2000243
Evalue1.03e-212
EggNOG OGsCOG5647@1|root,KOG2166@2759|Eukaryota,37I6E@33090|Viridiplantae,3GEGV@35493|Streptophyta,3KRMK@4447|Liliopsida,3I2DA@38820|Poales
DescriptionBelongs to the cullin family
COG categoryD
BRITEko00000,ko00001,ko00002,ko03400,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2829Gcaud2829Gracilaria caudata M_176_S67 malegeneNODE_7_length_102599_cov_4.541909 17741..20095 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2829.t1.start1Gcaud2829.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_7_length_102599_cov_4.541909 17741..17743 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2829.t1.CDS1Gcaud2829.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_7_length_102599_cov_4.541909 17741..20095 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2829.t1.exon1Gcaud2829.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_7_length_102599_cov_4.541909 17741..20095 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2829.t1.stop1Gcaud2829.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_7_length_102599_cov_4.541909 20093..20095 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2829.t1Gcaud2829.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_7_length_102599_cov_4.541909 17741..20095 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2829.t1 ID=Gcaud2829.t1|Name=Gcaud2829.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=785bp
MARRNSGRFVISCFPQPVQLDPHFAEKTWQTLEHAINEINKRNISNLSFE
QLYRYSYNMVLHKHGDYLYDGLTRLQTDHLIAVADLIKRTEPPVFLSEIK
RQWTWFEISLSHVREVLMYMDRHYVKPKKKKNVHELGLALFRDGVVRHPS
ILPRLSETLLASIDKERNGEPIDYLLVKSITRMLAELGVDDDGKSVYETV
FEDGFLERTRQFYAREATLYLSETTCSEYLRKASQRINQERLRVECYLEP
DTAPKVRRVAETELISKYMDKLINMENSGLIWMLRNDKIEDLKLMYTLFK
GIKHGEEEVRHNLKEEVLERGTKIIQNTENVRDPIALVNAILMLREKYDN
IVNTAFTTPAEKAPQASNPAGSAMTARYFLEQLNNGSSSDAVNGAQTRHE
SVPDKRFVSAVNDAFERFVNGFSRSAEYLSLYVDKLLRKDFKGLTDDEID
AKLDAVMALFRYLSDKDVFERYYKQHLQKRLLYSRSTSSDAERSFITKMK
TDCGYLYTSKMEIMFNDMKTSDESTSQFRDKVAQESIEMRGIDLKVFVLT
TMSWPVPQTPAVNLPEDAVHCASKFEEFYYQKHNGRRLTWQQSLGTAEIR
ARFGTRVYELYSVSAYAMCILLLFNSNDSLTYKEIADATLIPESELVRHL
QSLSLAKHKVLKKEPREKEVKPNDRFMFNSDFQSRSRRIKMQVVTAQKEN
ETERNHTRCRINADRGPVIDTVVVRIMKHRKTLEHNRLIAEVTRELESKF
EPNTQEIKKRIESLVEREYLERQKDKRQVYQYVA*
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spliced messenger RNA

>Gcaud2829.t1 ID=Gcaud2829.t1|Name=Gcaud2829.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2355bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:17741..20095+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACGTCGTAACTCTGGACGTTTTGTCATCTCTTGTTTTCCGCAGCC
TGTTCAACTTGACCCCCACTTTGCGGAGAAGACATGGCAAACGCTTGAGC
ATGCCATCAATGAGATTAACAAACGCAACATTTCCAACCTTTCGTTTGAG
CAGCTTTATCGCTATTCGTACAACATGGTACTTCACAAGCACGGCGACTA
TCTGTACGATGGTCTTACTCGCCTGCAAACTGATCATCTCATCGCAGTTG
CAGATCTCATCAAGCGCACCGAACCCCCCGTCTTTCTGTCAGAGATAAAG
CGCCAGTGGACCTGGTTTGAAATCAGTCTCTCACATGTGCGCGAGGTTTT
GATGTACATGGATCGTCACTATGTCAAACCGAAGAAGAAGAAGAACGTAC
ATGAGCTAGGGCTTGCCCTCTTCCGCGACGGAGTCGTCCGTCACCCGTCC
ATTCTTCCACGTTTATCGGAGACTCTCTTGGCGAGCATCGATAAGGAGAG
AAATGGAGAACCTATTGATTACTTGCTTGTCAAGAGCATTACAAGAATGC
TGGCCGAACTGGGCGTAGACGACGACGGCAAATCTGTTTACGAGACCGTT
TTTGAAGATGGCTTTCTTGAGCGCACACGCCAGTTTTACGCCCGAGAAGC
CACTCTATATCTCTCGGAAACAACATGCTCTGAATATTTGCGAAAGGCTA
GTCAACGCATCAATCAAGAGCGTCTGAGAGTTGAATGCTATTTGGAGCCC
GACACCGCACCAAAAGTACGTCGCGTTGCAGAGACCGAACTCATATCCAA
GTACATGGACAAACTTATCAACATGGAGAACTCTGGTCTTATCTGGATGT
TGCGTAACGACAAAATTGAGGACCTTAAGCTCATGTACACTCTTTTCAAG
GGCATTAAACACGGTGAAGAGGAGGTCCGCCATAACCTCAAAGAAGAAGT
CCTAGAAAGAGGAACTAAAATTATCCAGAATACCGAAAACGTTCGCGATC
CTATTGCTCTGGTCAACGCTATCCTCATGTTAAGGGAAAAATACGACAAC
ATTGTCAACACTGCGTTTACGACTCCGGCCGAGAAGGCTCCGCAAGCCTC
AAACCCTGCAGGTTCAGCCATGACTGCTAGATATTTCTTAGAACAGCTGA
ACAATGGGTCCAGCAGCGATGCAGTGAATGGCGCCCAAACACGGCATGAA
AGCGTTCCTGATAAGCGCTTCGTTTCTGCGGTCAATGATGCATTTGAACG
GTTTGTAAACGGCTTCAGCCGATCTGCCGAATACCTTTCGCTCTATGTAG
ACAAACTCTTGCGGAAAGATTTCAAGGGACTAACTGATGATGAGATCGAT
GCCAAACTAGATGCTGTCATGGCACTGTTCCGGTATCTAAGTGACAAGGA
CGTTTTTGAACGATACTACAAGCAGCATTTACAAAAGCGACTGCTTTATT
CCCGATCTACCTCATCTGATGCGGAACGGAGTTTCATCACCAAGATGAAG
ACCGATTGCGGGTACTTGTACACTTCGAAAATGGAAATCATGTTCAACGA
TATGAAAACTAGTGACGAAAGCACATCACAGTTTAGGGACAAAGTGGCTC
AGGAATCTATTGAAATGCGAGGAATAGATTTGAAGGTGTTTGTGCTCACC
ACCATGAGTTGGCCGGTGCCTCAAACACCAGCTGTGAATCTCCCAGAAGA
TGCTGTACACTGCGCTTCTAAGTTTGAGGAATTCTATTACCAAAAGCATA
ACGGACGACGACTGACATGGCAGCAATCTCTCGGAACGGCAGAGATACGT
GCTAGGTTTGGCACCCGTGTATATGAGCTCTATTCGGTGTCGGCCTATGC
TATGTGCATCCTTTTGTTATTTAACTCGAATGACAGTCTTACATACAAAG
AAATCGCTGACGCTACCCTCATCCCTGAATCAGAGCTTGTGAGACACTTA
CAAAGTCTTTCTCTGGCGAAGCACAAGGTCTTGAAGAAAGAACCTCGGGA
AAAGGAAGTGAAACCAAACGATAGATTCATGTTCAACTCTGATTTTCAAA
GTCGAAGCAGAAGAATCAAGATGCAAGTCGTCACAGCTCAGAAAGAGAAC
GAAACTGAGAGAAATCATACGCGCTGTCGCATCAATGCCGACCGCGGTCC
TGTGATAGATACAGTTGTCGTGCGCATCATGAAGCATCGTAAGACTTTGG
AGCACAACAGACTTATAGCTGAAGTCACCCGAGAATTAGAATCAAAGTTC
GAGCCAAACACTCAAGAGATCAAGAAGAGAATTGAAAGTCTTGTAGAGAG
AGAGTACTTGGAGAGACAAAAGGACAAGAGGCAGGTGTATCAGTATGTGG
CGTAG
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protein sequence of Gcaud2829.t1

>Gcaud2829.t1 ID=Gcaud2829.t1|Name=Gcaud2829.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=785bp
MARRNSGRFVISCFPQPVQLDPHFAEKTWQTLEHAINEINKRNISNLSFE
QLYRYSYNMVLHKHGDYLYDGLTRLQTDHLIAVADLIKRTEPPVFLSEIK
RQWTWFEISLSHVREVLMYMDRHYVKPKKKKNVHELGLALFRDGVVRHPS
ILPRLSETLLASIDKERNGEPIDYLLVKSITRMLAELGVDDDGKSVYETV
FEDGFLERTRQFYAREATLYLSETTCSEYLRKASQRINQERLRVECYLEP
DTAPKVRRVAETELISKYMDKLINMENSGLIWMLRNDKIEDLKLMYTLFK
GIKHGEEEVRHNLKEEVLERGTKIIQNTENVRDPIALVNAILMLREKYDN
IVNTAFTTPAEKAPQASNPAGSAMTARYFLEQLNNGSSSDAVNGAQTRHE
SVPDKRFVSAVNDAFERFVNGFSRSAEYLSLYVDKLLRKDFKGLTDDEID
AKLDAVMALFRYLSDKDVFERYYKQHLQKRLLYSRSTSSDAERSFITKMK
TDCGYLYTSKMEIMFNDMKTSDESTSQFRDKVAQESIEMRGIDLKVFVLT
TMSWPVPQTPAVNLPEDAVHCASKFEEFYYQKHNGRRLTWQQSLGTAEIR
ARFGTRVYELYSVSAYAMCILLLFNSNDSLTYKEIADATLIPESELVRHL
QSLSLAKHKVLKKEPREKEVKPNDRFMFNSDFQSRSRRIKMQVVTAQKEN
ETERNHTRCRINADRGPVIDTVVVRIMKHRKTLEHNRLIAEVTRELESKF
EPNTQEIKKRIESLVEREYLERQKDKRQVYQYVA*
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mRNA from alignment at NODE_7_length_102599_cov_4.541909:17741..20095+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2829.t1 ID=Gcaud2829.t1|Name=Gcaud2829.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2355bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:17741..20095+ (Gracilaria caudata M_176_S67 male)
ATGGCACGTCGTAACTCTGGACGTTTTGTCATCTCTTGTTTTCCGCAGCC TGTTCAACTTGACCCCCACTTTGCGGAGAAGACATGGCAAACGCTTGAGC ATGCCATCAATGAGATTAACAAACGCAACATTTCCAACCTTTCGTTTGAG CAGCTTTATCGCTATTCGTACAACATGGTACTTCACAAGCACGGCGACTA TCTGTACGATGGTCTTACTCGCCTGCAAACTGATCATCTCATCGCAGTTG CAGATCTCATCAAGCGCACCGAACCCCCCGTCTTTCTGTCAGAGATAAAG CGCCAGTGGACCTGGTTTGAAATCAGTCTCTCACATGTGCGCGAGGTTTT GATGTACATGGATCGTCACTATGTCAAACCGAAGAAGAAGAAGAACGTAC ATGAGCTAGGGCTTGCCCTCTTCCGCGACGGAGTCGTCCGTCACCCGTCC ATTCTTCCACGTTTATCGGAGACTCTCTTGGCGAGCATCGATAAGGAGAG AAATGGAGAACCTATTGATTACTTGCTTGTCAAGAGCATTACAAGAATGC TGGCCGAACTGGGCGTAGACGACGACGGCAAATCTGTTTACGAGACCGTT TTTGAAGATGGCTTTCTTGAGCGCACACGCCAGTTTTACGCCCGAGAAGC CACTCTATATCTCTCGGAAACAACATGCTCTGAATATTTGCGAAAGGCTA GTCAACGCATCAATCAAGAGCGTCTGAGAGTTGAATGCTATTTGGAGCCC GACACCGCACCAAAAGTACGTCGCGTTGCAGAGACCGAACTCATATCCAA GTACATGGACAAACTTATCAACATGGAGAACTCTGGTCTTATCTGGATGT TGCGTAACGACAAAATTGAGGACCTTAAGCTCATGTACACTCTTTTCAAG GGCATTAAACACGGTGAAGAGGAGGTCCGCCATAACCTCAAAGAAGAAGT CCTAGAAAGAGGAACTAAAATTATCCAGAATACCGAAAACGTTCGCGATC CTATTGCTCTGGTCAACGCTATCCTCATGTTAAGGGAAAAATACGACAAC ATTGTCAACACTGCGTTTACGACTCCGGCCGAGAAGGCTCCGCAAGCCTC AAACCCTGCAGGTTCAGCCATGACTGCTAGATATTTCTTAGAACAGCTGA ACAATGGGTCCAGCAGCGATGCAGTGAATGGCGCCCAAACACGGCATGAA AGCGTTCCTGATAAGCGCTTCGTTTCTGCGGTCAATGATGCATTTGAACG GTTTGTAAACGGCTTCAGCCGATCTGCCGAATACCTTTCGCTCTATGTAG ACAAACTCTTGCGGAAAGATTTCAAGGGACTAACTGATGATGAGATCGAT GCCAAACTAGATGCTGTCATGGCACTGTTCCGGTATCTAAGTGACAAGGA CGTTTTTGAACGATACTACAAGCAGCATTTACAAAAGCGACTGCTTTATT CCCGATCTACCTCATCTGATGCGGAACGGAGTTTCATCACCAAGATGAAG ACCGATTGCGGGTACTTGTACACTTCGAAAATGGAAATCATGTTCAACGA TATGAAAACTAGTGACGAAAGCACATCACAGTTTAGGGACAAAGTGGCTC AGGAATCTATTGAAATGCGAGGAATAGATTTGAAGGTGTTTGTGCTCACC ACCATGAGTTGGCCGGTGCCTCAAACACCAGCTGTGAATCTCCCAGAAGA TGCTGTACACTGCGCTTCTAAGTTTGAGGAATTCTATTACCAAAAGCATA ACGGACGACGACTGACATGGCAGCAATCTCTCGGAACGGCAGAGATACGT GCTAGGTTTGGCACCCGTGTATATGAGCTCTATTCGGTGTCGGCCTATGC TATGTGCATCCTTTTGTTATTTAACTCGAATGACAGTCTTACATACAAAG AAATCGCTGACGCTACCCTCATCCCTGAATCAGAGCTTGTGAGACACTTA CAAAGTCTTTCTCTGGCGAAGCACAAGGTCTTGAAGAAAGAACCTCGGGA AAAGGAAGTGAAACCAAACGATAGATTCATGTTCAACTCTGATTTTCAAA GTCGAAGCAGAAGAATCAAGATGCAAGTCGTCACAGCTCAGAAAGAGAAC GAAACTGAGAGAAATCATACGCGCTGTCGCATCAATGCCGACCGCGGTCC TGTGATAGATACAGTTGTCGTGCGCATCATGAAGCATCGTAAGACTTTGG AGCACAACAGACTTATAGCTGAAGTCACCCGAGAATTAGAATCAAAGTTC GAGCCAAACACTCAAGAGATCAAGAAGAGAATTGAAAGTCTTGTAGAGAG AGAGTACTTGGAGAGACAAAAGGACAAGAGGCAGGTGTATCAGTATGTGG CGTAG
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Coding sequence (CDS) from alignment at NODE_7_length_102599_cov_4.541909:17741..20095+

>Gcaud2829.t1 ID=Gcaud2829.t1|Name=Gcaud2829.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2355bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:17741..20095+ (Gracilaria caudata M_176_S67 male)
ATGGCACGTCGTAACTCTGGACGTTTTGTCATCTCTTGTTTTCCGCAGCC
TGTTCAACTTGACCCCCACTTTGCGGAGAAGACATGGCAAACGCTTGAGC
ATGCCATCAATGAGATTAACAAACGCAACATTTCCAACCTTTCGTTTGAG
CAGCTTTATCGCTATTCGTACAACATGGTACTTCACAAGCACGGCGACTA
TCTGTACGATGGTCTTACTCGCCTGCAAACTGATCATCTCATCGCAGTTG
CAGATCTCATCAAGCGCACCGAACCCCCCGTCTTTCTGTCAGAGATAAAG
CGCCAGTGGACCTGGTTTGAAATCAGTCTCTCACATGTGCGCGAGGTTTT
GATGTACATGGATCGTCACTATGTCAAACCGAAGAAGAAGAAGAACGTAC
ATGAGCTAGGGCTTGCCCTCTTCCGCGACGGAGTCGTCCGTCACCCGTCC
ATTCTTCCACGTTTATCGGAGACTCTCTTGGCGAGCATCGATAAGGAGAG
AAATGGAGAACCTATTGATTACTTGCTTGTCAAGAGCATTACAAGAATGC
TGGCCGAACTGGGCGTAGACGACGACGGCAAATCTGTTTACGAGACCGTT
TTTGAAGATGGCTTTCTTGAGCGCACACGCCAGTTTTACGCCCGAGAAGC
CACTCTATATCTCTCGGAAACAACATGCTCTGAATATTTGCGAAAGGCTA
GTCAACGCATCAATCAAGAGCGTCTGAGAGTTGAATGCTATTTGGAGCCC
GACACCGCACCAAAAGTACGTCGCGTTGCAGAGACCGAACTCATATCCAA
GTACATGGACAAACTTATCAACATGGAGAACTCTGGTCTTATCTGGATGT
TGCGTAACGACAAAATTGAGGACCTTAAGCTCATGTACACTCTTTTCAAG
GGCATTAAACACGGTGAAGAGGAGGTCCGCCATAACCTCAAAGAAGAAGT
CCTAGAAAGAGGAACTAAAATTATCCAGAATACCGAAAACGTTCGCGATC
CTATTGCTCTGGTCAACGCTATCCTCATGTTAAGGGAAAAATACGACAAC
ATTGTCAACACTGCGTTTACGACTCCGGCCGAGAAGGCTCCGCAAGCCTC
AAACCCTGCAGGTTCAGCCATGACTGCTAGATATTTCTTAGAACAGCTGA
ACAATGGGTCCAGCAGCGATGCAGTGAATGGCGCCCAAACACGGCATGAA
AGCGTTCCTGATAAGCGCTTCGTTTCTGCGGTCAATGATGCATTTGAACG
GTTTGTAAACGGCTTCAGCCGATCTGCCGAATACCTTTCGCTCTATGTAG
ACAAACTCTTGCGGAAAGATTTCAAGGGACTAACTGATGATGAGATCGAT
GCCAAACTAGATGCTGTCATGGCACTGTTCCGGTATCTAAGTGACAAGGA
CGTTTTTGAACGATACTACAAGCAGCATTTACAAAAGCGACTGCTTTATT
CCCGATCTACCTCATCTGATGCGGAACGGAGTTTCATCACCAAGATGAAG
ACCGATTGCGGGTACTTGTACACTTCGAAAATGGAAATCATGTTCAACGA
TATGAAAACTAGTGACGAAAGCACATCACAGTTTAGGGACAAAGTGGCTC
AGGAATCTATTGAAATGCGAGGAATAGATTTGAAGGTGTTTGTGCTCACC
ACCATGAGTTGGCCGGTGCCTCAAACACCAGCTGTGAATCTCCCAGAAGA
TGCTGTACACTGCGCTTCTAAGTTTGAGGAATTCTATTACCAAAAGCATA
ACGGACGACGACTGACATGGCAGCAATCTCTCGGAACGGCAGAGATACGT
GCTAGGTTTGGCACCCGTGTATATGAGCTCTATTCGGTGTCGGCCTATGC
TATGTGCATCCTTTTGTTATTTAACTCGAATGACAGTCTTACATACAAAG
AAATCGCTGACGCTACCCTCATCCCTGAATCAGAGCTTGTGAGACACTTA
CAAAGTCTTTCTCTGGCGAAGCACAAGGTCTTGAAGAAAGAACCTCGGGA
AAAGGAAGTGAAACCAAACGATAGATTCATGTTCAACTCTGATTTTCAAA
GTCGAAGCAGAAGAATCAAGATGCAAGTCGTCACAGCTCAGAAAGAGAAC
GAAACTGAGAGAAATCATACGCGCTGTCGCATCAATGCCGACCGCGGTCC
TGTGATAGATACAGTTGTCGTGCGCATCATGAAGCATCGTAAGACTTTGG
AGCACAACAGACTTATAGCTGAAGTCACCCGAGAATTAGAATCAAAGTTC
GAGCCAAACACTCAAGAGATCAAGAAGAGAATTGAAAGTCTTGTAGAGAG
AGAGTACTTGGAGAGACAAAAGGACAAGAGGCAGGTGTATCAGTATGTGG
CGTAG
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