Gcaud2826.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2826.t1
Unique NameGcaud2826.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length116
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_7_length_102599_cov_4.541909contigNODE_7_length_102599_cov_4.541909:13356..13846 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_132158
Preferred nameBLOC1S1
PFAMsGCN5L1
Max annot lvl2759|Eukaryota
KEGG rclassRC00649
KEGG koko:K00061,ko:K15078,ko:K20185
KEGG ReactionR03048,R08382
KEGG Pathwayko00830,ko03460,map00830,map03460
GOsGO:0000323,GO:0003008,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005759,GO:0005764,GO:0005765,GO:0005768,GO:0005769,GO:0005773,GO:0005774,GO:0005829,GO:0006091,GO:0006464,GO:0006473,GO:0006807,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007034,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007275,GO:0007399,GO:0007610,GO:0007611,GO:0007612,GO:0007635,GO:0008057,GO:0008088,GO:0008089,GO:0008150,GO:0008152,GO:0008306,GO:0008355,GO:0009060,GO:0009987,GO:0010256,GO:0010970,GO:0012505,GO:0015980,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0018193,GO:0018205,GO:0018394,GO:0019538,GO:0022008,GO:0022622,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0030705,GO:0031082,GO:0031083,GO:0031090,GO:0031175,GO:0031410,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031982,GO:0032418,GO:0032438,GO:0032501,GO:0032502,GO:0032991,GO:0033059,GO:0033363,GO:0036211,GO:0036465,GO:0036466,GO:0042048,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043473,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045324,GO:0045333,GO:0046907,GO:0047496,GO:0048364,GO:0048468,GO:0048489,GO:0048490,GO:0048666,GO:0048699,GO:0048731,GO:0048753,GO:0048856,GO:0048869,GO:0050808,GO:0050877,GO:0050890,GO:0050896,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0055114,GO:0060155,GO:0070013,GO:0071704,GO:0071840,GO:0072384,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098805,GO:0098852,GO:0098916,GO:0098930,GO:0099003,GO:0099078,GO:0099111,GO:0099402,GO:0099504,GO:0099514,GO:0099517,GO:0099518,GO:0099536,GO:0099537,GO:0120036,GO:1901564
Evalue2.2e-11
EggNOG OGsKOG3390@1|root,KOG3390@2759|Eukaryota
EC1.1.1.315
Descriptionanterograde synaptic vesicle transport
COG categoryH
BRITEko00000,ko00001,ko01000,ko03400,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2826Gcaud2826Gracilaria caudata M_176_S67 malegeneNODE_7_length_102599_cov_4.541909 13356..13846 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2826.t1Gcaud2826.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_7_length_102599_cov_4.541909 13356..13846 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2826.t1.stop1Gcaud2826.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_7_length_102599_cov_4.541909 13356..13358 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2826.t1.CDS1Gcaud2826.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_7_length_102599_cov_4.541909 13356..13559 -
Gcaud2826.t1.CDS2Gcaud2826.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_7_length_102599_cov_4.541909 13638..13720 -
Gcaud2826.t1.CDS3Gcaud2826.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_7_length_102599_cov_4.541909 13786..13846 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2826.t1.exon1Gcaud2826.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_7_length_102599_cov_4.541909 13356..13559 -
Gcaud2826.t1.exon2Gcaud2826.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_7_length_102599_cov_4.541909 13638..13720 -
Gcaud2826.t1.exon3Gcaud2826.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_7_length_102599_cov_4.541909 13786..13846 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2826.t1.intron1Gcaud2826.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_7_length_102599_cov_4.541909 13560..13637 -
Gcaud2826.t1.intron2Gcaud2826.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_7_length_102599_cov_4.541909 13721..13785 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2826.t1.start1Gcaud2826.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_7_length_102599_cov_4.541909 13844..13846 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2826.t1 ID=Gcaud2826.t1|Name=Gcaud2826.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=116bp
MLSVHIREAERRKNELKQSLSAGAQTVQKAASDLSDALLKVINEDVQEVY
QAERQIETELRNIERLLSSNGYQIHQWTTLLDRLTKELKELGDVSNWVEV
LEQSANEIKNIATQL*
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spliced messenger RNA

>Gcaud2826.t1 ID=Gcaud2826.t1|Name=Gcaud2826.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=348bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:13356..13846- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTCCGTACACATTCGAGAGGCGGAGCGAAGAAAAAATGAGTTAAA
GCAGTCGTTAAGTGCTGGGGCGCAAACAGTCCAAAAAGCAGCTTCCGATC
TTAGTGATGCTCTTCTCAAGGTTATTAATGAAGATGTTCAAGAGGTCTAT
CAAGCAGAACGCCAGATCGAAACGGAGCTTCGAAACATTGAGCGTTTGTT
GTCTTCTAACGGTTATCAAATCCATCAGTGGACCACACTTCTCGATCGAC
TTACTAAAGAACTGAAGGAGCTTGGTGATGTATCTAACTGGGTAGAAGTA
CTGGAGCAATCTGCGAACGAAATCAAGAACATCGCTACTCAACTCTGA
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protein sequence of Gcaud2826.t1

>Gcaud2826.t1 ID=Gcaud2826.t1|Name=Gcaud2826.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=116bp
MLSVHIREAERRKNELKQSLSAGAQTVQKAASDLSDALLKVINEDVQEVY
QAERQIETELRNIERLLSSNGYQIHQWTTLLDRLTKELKELGDVSNWVEV
LEQSANEIKNIATQL*
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mRNA from alignment at NODE_7_length_102599_cov_4.541909:13356..13846-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2826.t1 ID=Gcaud2826.t1|Name=Gcaud2826.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=491bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:13356..13846- (Gracilaria caudata M_176_S67 male)
ATGCTTTCCGTACACATTCGAGAGGCGGAGCGAAGAAAAAATGAGTTAAA
GCAGTCGTTAAGTACGTTTCCAATTCCTGCGGAATATCGCCATCTTATGT
CTGACAAAGTGTCATTCCCTACTCAGGTGCTGGGGCGCAAACAGTCCAAA
AAGCAGCTTCCGATCTTAGTGATGCTCTTCTCAAGGTTATTAATGAAGAT
GTTCAAGAGGTAGCTTAAGATGAATTAATTCAGAACTCATTCTAATCAAT
ATCTCGACCTTGTCTAACACTTTCTTGTTGTGATCAGGTCTATCAAGCAG
AACGCCAGATCGAAACGGAGCTTCGAAACATTGAGCGTTTGTTGTCTTCT
AACGGTTATCAAATCCATCAGTGGACCACACTTCTCGATCGACTTACTAA
AGAACTGAAGGAGCTTGGTGATGTATCTAACTGGGTAGAAGTACTGGAGC
AATCTGCGAACGAAATCAAGAACATCGCTACTCAACTCTGA
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Coding sequence (CDS) from alignment at NODE_7_length_102599_cov_4.541909:13356..13846-

>Gcaud2826.t1 ID=Gcaud2826.t1|Name=Gcaud2826.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=348bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:13356..13846- (Gracilaria caudata M_176_S67 male)
ATGCTTTCCGTACACATTCGAGAGGCGGAGCGAAGAAAAAATGAGTTAAA
GCAGTCGTTAAGTGCTGGGGCGCAAACAGTCCAAAAAGCAGCTTCCGATC
TTAGTGATGCTCTTCTCAAGGTTATTAATGAAGATGTTCAAGAGGTCTAT
CAAGCAGAACGCCAGATCGAAACGGAGCTTCGAAACATTGAGCGTTTGTT
GTCTTCTAACGGTTATCAAATCCATCAGTGGACCACACTTCTCGATCGAC
TTACTAAAGAACTGAAGGAGCTTGGTGATGTATCTAACTGGGTAGAAGTA
CTGGAGCAATCTGCGAACGAAATCAAGAACATCGCTACTCAACTCTGA
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