Gcaud2822.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2822.t1
Unique Name	Gcaud2822.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	548

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_7_length_102599_cov_4.541909	contig	NODE_7_length_102599_cov_4.541909:3915..5558 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	400682.PAC_15726053
Max annot lvl	400682.PAC_15726053\|-
KEGG rclass	RC00005,RC00049
KEGG ko	ko:K13499
KEGG Reaction	R04603,R05931,R05932,R05933,R05934,R07336
KEGG Pathway	ko00532,ko01100,map00532,map01100
KEGG Module	M00058
Evalue	3.53e-30
EggNOG OGs	KOG3588@1\|root,KOG3588@2759\|Eukaryota,38D3Y@33154\|Opisthokonta,3BBF5@33208\|Metazoa
EC	2.4.1.175,2.4.1.226
Description	Chondroitin sulfate synthase
COG category	G
CAZy	GT31,GT7
BRITE	ko00000,ko00001,ko00002,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2822	Gcaud2822	Gracilaria caudata M_176_S67 male	gene	NODE_7_length_102599_cov_4.541909 3915..5558 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2822.t1.start1	Gcaud2822.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_7_length_102599_cov_4.541909 3915..3917 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2822.t1.CDS1	Gcaud2822.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_7_length_102599_cov_4.541909 3915..5558 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2822.t1.exon1	Gcaud2822.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_7_length_102599_cov_4.541909 3915..5558 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2822.t1.stop1	Gcaud2822.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_7_length_102599_cov_4.541909 5556..5558 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2822.t1	Gcaud2822.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_7_length_102599_cov_4.541909 3915..5558 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_7_length_102599_cov_4.541909:3915..5558+
coding sequence from alignment at NODE_7_length_102599_cov_4.541909:3915..5558+

mRNA sequence

>Gcaud2822.t1 ID=Gcaud2822.t1|Name=Gcaud2822.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=548bp
MAATTFVGTSRRARTTSSIVSSPPLPTHRRSPQSKKRFRFSCGLLLVPIS
CLLLLALVLLWKPARHARPPSLQASLSSLPTAQLERFFSAAVPAVSNPSA
AFADRPPRLLGGAHDGQPFFMTDDVSDSFFGKCYVASQRSMFHPCLSRGA
DRAEIEARRFAKQPRDFDDVFAVVDEKRFLYHADRPSVHTVDELGAGLVT
DYDDVRKVAISLTQQDVKKGTLSNFSTPVVYMRNTRRDGFQSIVNVRAIV
EYFNRNGTKRAAKPLVSRVVAVTKGYGRPCEVHFVRPRESVRIHIVVAYS
GRPARLAAFLNMFDAYYKKTQTDLLRIIVTTTQKEEAQVKSEVKKCKHLT
STRIKIVHSRGDINGGFSRAVAMREAAKLVPDKEIMFLSDIDVVIRGNFL
QNCRVNSIMGSQAWFPVMFSLYPYGKSLSSKDGFWRRSSYGMVCMYKADF
DKVGGFGGNEEKNFQGWGSEDVFLYNQFRDNADYAVLRTLEPGLLHQWHS
KECPRNKHYKECMRTLYMTIGSQETLAKLMAEADLDISSLTKDALPV*

spliced messenger RNA

>Gcaud2822.t1 ID=Gcaud2822.t1|Name=Gcaud2822.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1644bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:3915..5558+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCTACGACCTTCGTGGGCACTTCGCGTCGCGCTCGCACTACCTC
GTCCATTGTCTCCTCGCCGCCGTTACCGACGCACCGTCGTTCACCGCAGT
CGAAGAAGCGCTTCCGCTTCTCCTGCGGTCTGCTTCTTGTACCCATATCT
TGCCTCCTTCTGCTCGCACTAGTGTTACTATGGAAGCCGGCGCGACACGC
CAGACCGCCCAGTCTGCAAGCATCCCTTTCCAGCCTGCCGACAGCACAGT
TGGAACGCTTCTTTTCTGCTGCCGTGCCAGCTGTGTCCAACCCGTCAGCG
GCGTTTGCCGATCGTCCACCGCGCTTGCTTGGCGGTGCACATGATGGGCA
GCCCTTTTTCATGACGGATGACGTCAGTGACTCCTTTTTTGGCAAGTGTT
ATGTTGCGTCGCAGCGTTCCATGTTTCATCCTTGCTTGAGTCGCGGCGCT
GATCGCGCGGAGATTGAGGCCAGGCGCTTTGCCAAGCAGCCTCGAGATTT
TGACGACGTTTTTGCTGTGGTGGATGAGAAGCGCTTTCTGTATCACGCCG
ATCGACCCAGTGTGCATACGGTGGATGAACTAGGTGCTGGGTTGGTCACC
GATTACGACGATGTTCGAAAAGTTGCCATCTCACTCACACAACAAGATGT
GAAAAAGGGCACGCTCAGCAACTTTAGCACACCTGTTGTATACATGCGCA
ATACCCGCCGTGACGGCTTTCAAAGCATTGTTAACGTTCGCGCCATTGTC
GAGTACTTCAATCGTAACGGAACCAAACGCGCGGCCAAGCCGCTGGTGAG
TCGCGTTGTTGCGGTCACAAAGGGTTATGGCAGACCGTGTGAAGTCCATT
TTGTACGCCCCCGTGAGTCGGTGCGCATTCACATAGTGGTGGCGTATTCC
GGACGTCCCGCCAGGTTGGCGGCCTTTTTGAACATGTTTGATGCTTACTA
CAAAAAGACTCAAACGGATCTGCTTCGTATCATCGTGACCACCACACAGA
AAGAGGAAGCACAGGTCAAATCTGAAGTGAAGAAATGTAAACATCTCACT
TCAACCAGGATCAAGATAGTGCATTCACGTGGAGATATAAACGGCGGTTT
TTCACGCGCTGTGGCGATGCGAGAGGCAGCCAAGCTTGTGCCCGATAAGG
AGATCATGTTCCTCTCAGACATTGATGTGGTCATTCGTGGAAACTTTCTG
CAAAACTGCAGAGTGAACTCCATAATGGGATCGCAAGCATGGTTCCCCGT
AATGTTCTCACTGTATCCGTACGGAAAGTCGCTGTCGAGTAAAGATGGAT
TTTGGAGAAGAAGCAGCTACGGAATGGTGTGCATGTACAAGGCTGACTTT
GACAAGGTTGGCGGATTTGGAGGAAATGAAGAAAAGAACTTCCAAGGTTG
GGGTTCTGAAGATGTTTTCTTGTACAATCAGTTCCGAGACAATGCGGACT
ATGCAGTGCTGAGAACGCTGGAGCCGGGTCTGTTACACCAGTGGCACAGC
AAAGAGTGTCCCCGAAACAAGCACTACAAAGAATGCATGCGGACTCTGTA
CATGACAATCGGCAGCCAGGAAACATTGGCAAAGTTGATGGCGGAAGCGG
ATTTGGATATTTCCAGCTTGACCAAGGATGCGCTACCAGTGTGA

protein sequence of Gcaud2822.t1

>Gcaud2822.t1 ID=Gcaud2822.t1|Name=Gcaud2822.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=548bp
MAATTFVGTSRRARTTSSIVSSPPLPTHRRSPQSKKRFRFSCGLLLVPIS
CLLLLALVLLWKPARHARPPSLQASLSSLPTAQLERFFSAAVPAVSNPSA
AFADRPPRLLGGAHDGQPFFMTDDVSDSFFGKCYVASQRSMFHPCLSRGA
DRAEIEARRFAKQPRDFDDVFAVVDEKRFLYHADRPSVHTVDELGAGLVT
DYDDVRKVAISLTQQDVKKGTLSNFSTPVVYMRNTRRDGFQSIVNVRAIV
EYFNRNGTKRAAKPLVSRVVAVTKGYGRPCEVHFVRPRESVRIHIVVAYS
GRPARLAAFLNMFDAYYKKTQTDLLRIIVTTTQKEEAQVKSEVKKCKHLT
STRIKIVHSRGDINGGFSRAVAMREAAKLVPDKEIMFLSDIDVVIRGNFL
QNCRVNSIMGSQAWFPVMFSLYPYGKSLSSKDGFWRRSSYGMVCMYKADF
DKVGGFGGNEEKNFQGWGSEDVFLYNQFRDNADYAVLRTLEPGLLHQWHS
KECPRNKHYKECMRTLYMTIGSQETLAKLMAEADLDISSLTKDALPV*

mRNA from alignment at NODE_7_length_102599_cov_4.541909:3915..5558+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2822.t1 ID=Gcaud2822.t1|Name=Gcaud2822.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1644bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:3915..5558+ (Gracilaria caudata M_176_S67 male)
ATGGCTGCTACGACCTTCGTGGGCACTTCGCGTCGCGCTCGCACTACCTC
GTCCATTGTCTCCTCGCCGCCGTTACCGACGCACCGTCGTTCACCGCAGT
CGAAGAAGCGCTTCCGCTTCTCCTGCGGTCTGCTTCTTGTACCCATATCT
TGCCTCCTTCTGCTCGCACTAGTGTTACTATGGAAGCCGGCGCGACACGC
CAGACCGCCCAGTCTGCAAGCATCCCTTTCCAGCCTGCCGACAGCACAGT
TGGAACGCTTCTTTTCTGCTGCCGTGCCAGCTGTGTCCAACCCGTCAGCG
GCGTTTGCCGATCGTCCACCGCGCTTGCTTGGCGGTGCACATGATGGGCA
GCCCTTTTTCATGACGGATGACGTCAGTGACTCCTTTTTTGGCAAGTGTT
ATGTTGCGTCGCAGCGTTCCATGTTTCATCCTTGCTTGAGTCGCGGCGCT
GATCGCGCGGAGATTGAGGCCAGGCGCTTTGCCAAGCAGCCTCGAGATTT
TGACGACGTTTTTGCTGTGGTGGATGAGAAGCGCTTTCTGTATCACGCCG
ATCGACCCAGTGTGCATACGGTGGATGAACTAGGTGCTGGGTTGGTCACC
GATTACGACGATGTTCGAAAAGTTGCCATCTCACTCACACAACAAGATGT
GAAAAAGGGCACGCTCAGCAACTTTAGCACACCTGTTGTATACATGCGCA
ATACCCGCCGTGACGGCTTTCAAAGCATTGTTAACGTTCGCGCCATTGTC
GAGTACTTCAATCGTAACGGAACCAAACGCGCGGCCAAGCCGCTGGTGAG
TCGCGTTGTTGCGGTCACAAAGGGTTATGGCAGACCGTGTGAAGTCCATT
TTGTACGCCCCCGTGAGTCGGTGCGCATTCACATAGTGGTGGCGTATTCC
GGACGTCCCGCCAGGTTGGCGGCCTTTTTGAACATGTTTGATGCTTACTA
CAAAAAGACTCAAACGGATCTGCTTCGTATCATCGTGACCACCACACAGA
AAGAGGAAGCACAGGTCAAATCTGAAGTGAAGAAATGTAAACATCTCACT
TCAACCAGGATCAAGATAGTGCATTCACGTGGAGATATAAACGGCGGTTT
TTCACGCGCTGTGGCGATGCGAGAGGCAGCCAAGCTTGTGCCCGATAAGG
AGATCATGTTCCTCTCAGACATTGATGTGGTCATTCGTGGAAACTTTCTG
CAAAACTGCAGAGTGAACTCCATAATGGGATCGCAAGCATGGTTCCCCGT
AATGTTCTCACTGTATCCGTACGGAAAGTCGCTGTCGAGTAAAGATGGAT
TTTGGAGAAGAAGCAGCTACGGAATGGTGTGCATGTACAAGGCTGACTTT
GACAAGGTTGGCGGATTTGGAGGAAATGAAGAAAAGAACTTCCAAGGTTG
GGGTTCTGAAGATGTTTTCTTGTACAATCAGTTCCGAGACAATGCGGACT
ATGCAGTGCTGAGAACGCTGGAGCCGGGTCTGTTACACCAGTGGCACAGC
AAAGAGTGTCCCCGAAACAAGCACTACAAAGAATGCATGCGGACTCTGTA
CATGACAATCGGCAGCCAGGAAACATTGGCAAAGTTGATGGCGGAAGCGG
ATTTGGATATTTCCAGCTTGACCAAGGATGCGCTACCAGTGTGA

Coding sequence (CDS) from alignment at NODE_7_length_102599_cov_4.541909:3915..5558+

>Gcaud2822.t1 ID=Gcaud2822.t1|Name=Gcaud2822.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1644bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:3915..5558+ (Gracilaria caudata M_176_S67 male)
ATGGCTGCTACGACCTTCGTGGGCACTTCGCGTCGCGCTCGCACTACCTC
GTCCATTGTCTCCTCGCCGCCGTTACCGACGCACCGTCGTTCACCGCAGT
CGAAGAAGCGCTTCCGCTTCTCCTGCGGTCTGCTTCTTGTACCCATATCT
TGCCTCCTTCTGCTCGCACTAGTGTTACTATGGAAGCCGGCGCGACACGC
CAGACCGCCCAGTCTGCAAGCATCCCTTTCCAGCCTGCCGACAGCACAGT
TGGAACGCTTCTTTTCTGCTGCCGTGCCAGCTGTGTCCAACCCGTCAGCG
GCGTTTGCCGATCGTCCACCGCGCTTGCTTGGCGGTGCACATGATGGGCA
GCCCTTTTTCATGACGGATGACGTCAGTGACTCCTTTTTTGGCAAGTGTT
ATGTTGCGTCGCAGCGTTCCATGTTTCATCCTTGCTTGAGTCGCGGCGCT
GATCGCGCGGAGATTGAGGCCAGGCGCTTTGCCAAGCAGCCTCGAGATTT
TGACGACGTTTTTGCTGTGGTGGATGAGAAGCGCTTTCTGTATCACGCCG
ATCGACCCAGTGTGCATACGGTGGATGAACTAGGTGCTGGGTTGGTCACC
GATTACGACGATGTTCGAAAAGTTGCCATCTCACTCACACAACAAGATGT
GAAAAAGGGCACGCTCAGCAACTTTAGCACACCTGTTGTATACATGCGCA
ATACCCGCCGTGACGGCTTTCAAAGCATTGTTAACGTTCGCGCCATTGTC
GAGTACTTCAATCGTAACGGAACCAAACGCGCGGCCAAGCCGCTGGTGAG
TCGCGTTGTTGCGGTCACAAAGGGTTATGGCAGACCGTGTGAAGTCCATT
TTGTACGCCCCCGTGAGTCGGTGCGCATTCACATAGTGGTGGCGTATTCC
GGACGTCCCGCCAGGTTGGCGGCCTTTTTGAACATGTTTGATGCTTACTA
CAAAAAGACTCAAACGGATCTGCTTCGTATCATCGTGACCACCACACAGA
AAGAGGAAGCACAGGTCAAATCTGAAGTGAAGAAATGTAAACATCTCACT
TCAACCAGGATCAAGATAGTGCATTCACGTGGAGATATAAACGGCGGTTT
TTCACGCGCTGTGGCGATGCGAGAGGCAGCCAAGCTTGTGCCCGATAAGG
AGATCATGTTCCTCTCAGACATTGATGTGGTCATTCGTGGAAACTTTCTG
CAAAACTGCAGAGTGAACTCCATAATGGGATCGCAAGCATGGTTCCCCGT
AATGTTCTCACTGTATCCGTACGGAAAGTCGCTGTCGAGTAAAGATGGAT
TTTGGAGAAGAAGCAGCTACGGAATGGTGTGCATGTACAAGGCTGACTTT
GACAAGGTTGGCGGATTTGGAGGAAATGAAGAAAAGAACTTCCAAGGTTG
GGGTTCTGAAGATGTTTTCTTGTACAATCAGTTCCGAGACAATGCGGACT
ATGCAGTGCTGAGAACGCTGGAGCCGGGTCTGTTACACCAGTGGCACAGC
AAAGAGTGTCCCCGAAACAAGCACTACAAAGAATGCATGCGGACTCTGTA
CATGACAATCGGCAGCCAGGAAACATTGGCAAAGTTGATGGCGGAAGCGG
ATTTGGATATTTCCAGCTTGACCAAGGATGCGCTACCAGTGTGA