Gcaud2816.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2816.t1
Unique Name	Gcaud2816.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	448

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_483_length_24135_cov_4.702961	contig	NODE_483_length_24135_cov_4.702961:10128..11471 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2816	Gcaud2816	Gracilaria caudata M_176_S67 male	gene	NODE_483_length_24135_cov_4.702961 10128..11471 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2816.t1.stop1	Gcaud2816.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_483_length_24135_cov_4.702961 10128..10130 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2816.t1.CDS1	Gcaud2816.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_483_length_24135_cov_4.702961 10128..11471 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2816.t1.exon1	Gcaud2816.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_483_length_24135_cov_4.702961 10128..11471 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2816.t1.start1	Gcaud2816.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_483_length_24135_cov_4.702961 11469..11471 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2816.t1	Gcaud2816.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_483_length_24135_cov_4.702961 10128..11471 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_483_length_24135_cov_4.702961:10128..11471-
coding sequence from alignment at NODE_483_length_24135_cov_4.702961:10128..11471-

mRNA sequence

>Gcaud2816.t1 ID=Gcaud2816.t1|Name=Gcaud2816.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=448bp
MLLDSKEKSLPPYLKVRSKHENIYNFGHIRNDDPEFVSRLEKRKLETHRG
VHVYFKQPWCVNIGHALFDGLYAAWVALVVVGREKISQFTIIVNKNSTSK
WKFQADYVFKKFGGTNRFYDEHELLSPSAFHRFDVVVMGTSGKGQRWMTK
DLKIPGAEFNAPKLFRNRMYSVFGVKMRKWSKRNRTDIKTIIVHNKRYDH
REVRELINLTYVGKSAGFNIDYIDWSSIGEYPNNFGEHLRILSRTDVYIS
GPGTGMMYAPFLPDKAIFVALGTWQESNGDRFVAFMEQNVVEGCSFLMSL
YYPSSLRPTGIKLQIVAGLYDTALDIVQKGFRIPVKPGLNLSPEGQVFRE
ACLELPTECSYVLDAANGINNLEGCVYYGWADCMVYEVGAFKANKLYKDT
PCMPWKFREKIQAIASRRRDSLHDLSTPCKDSVCPVDQIQSHIAKNW*

spliced messenger RNA

>Gcaud2816.t1 ID=Gcaud2816.t1|Name=Gcaud2816.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at NODE_483_length_24135_cov_4.702961:10128..11471- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCTCGACTCTAAAGAAAAATCTCTGCCACCTTATCTAAAAGTTCG
ATCAAAACATGAAAACATCTATAATTTTGGACATATTCGAAACGATGATC
CCGAATTCGTTTCTCGCCTTGAAAAAAGAAAACTAGAAACTCATAGAGGT
GTTCACGTTTACTTTAAGCAGCCATGGTGTGTTAACATTGGCCATGCGCT
TTTCGATGGCTTATATGCGGCTTGGGTAGCTTTAGTAGTTGTTGGGAGGG
AAAAGATATCCCAATTCACTATAATTGTAAATAAGAACAGTACCTCAAAA
TGGAAGTTTCAAGCAGACTACGTATTTAAGAAGTTTGGAGGCACGAACAG
ATTTTATGATGAGCACGAACTGCTCAGTCCGTCTGCGTTCCATAGATTTG
ATGTCGTGGTCATGGGAACTAGTGGAAAGGGCCAAAGATGGATGACAAAG
GATTTGAAAATACCAGGAGCTGAGTTTAATGCTCCAAAGCTTTTCAGAAA
TCGCATGTATTCAGTGTTTGGAGTCAAAATGAGGAAATGGTCGAAACGAA
ACAGAACCGATATAAAGACTATAATAGTTCACAATAAGAGATACGACCAT
CGGGAAGTCAGGGAGCTTATAAACTTGACATACGTCGGAAAATCTGCTGG
ATTTAACATAGATTATATTGATTGGTCGTCCATTGGTGAATATCCTAATA
ACTTTGGAGAACATTTAAGAATTTTGAGCCGTACAGACGTTTATATCTCT
GGGCCCGGAACTGGAATGATGTACGCACCATTCCTCCCTGACAAAGCTAT
TTTTGTTGCCCTGGGGACATGGCAGGAAAGCAATGGAGATCGCTTTGTCG
CCTTTATGGAGCAGAATGTCGTCGAAGGTTGCTCTTTTCTAATGTCACTT
TACTATCCAAGCAGTTTAAGACCAACAGGAATCAAATTACAAATAGTGGC
CGGGCTTTATGATACAGCGCTAGATATAGTACAGAAAGGGTTTCGAATAC
CCGTCAAACCTGGCTTAAATTTATCTCCAGAGGGCCAAGTCTTCAGAGAA
GCCTGTCTTGAGCTACCGACGGAATGCAGCTACGTTTTAGATGCTGCGAA
CGGTATAAACAATCTTGAAGGATGCGTGTATTACGGTTGGGCAGATTGCA
TGGTGTACGAAGTTGGAGCTTTCAAGGCAAATAAGTTGTACAAAGACACT
CCGTGCATGCCTTGGAAATTTAGAGAAAAGATTCAGGCCATTGCCTCAAG
AAGAAGAGATTCATTACATGACCTTTCTACCCCTTGCAAAGATTCTGTTT
GCCCTGTTGACCAAATTCAGTCTCATATTGCCAAGAACTGGTGA

protein sequence of Gcaud2816.t1

>Gcaud2816.t1 ID=Gcaud2816.t1|Name=Gcaud2816.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=448bp
MLLDSKEKSLPPYLKVRSKHENIYNFGHIRNDDPEFVSRLEKRKLETHRG
VHVYFKQPWCVNIGHALFDGLYAAWVALVVVGREKISQFTIIVNKNSTSK
WKFQADYVFKKFGGTNRFYDEHELLSPSAFHRFDVVVMGTSGKGQRWMTK
DLKIPGAEFNAPKLFRNRMYSVFGVKMRKWSKRNRTDIKTIIVHNKRYDH
REVRELINLTYVGKSAGFNIDYIDWSSIGEYPNNFGEHLRILSRTDVYIS
GPGTGMMYAPFLPDKAIFVALGTWQESNGDRFVAFMEQNVVEGCSFLMSL
YYPSSLRPTGIKLQIVAGLYDTALDIVQKGFRIPVKPGLNLSPEGQVFRE
ACLELPTECSYVLDAANGINNLEGCVYYGWADCMVYEVGAFKANKLYKDT
PCMPWKFREKIQAIASRRRDSLHDLSTPCKDSVCPVDQIQSHIAKNW*

mRNA from alignment at NODE_483_length_24135_cov_4.702961:10128..11471-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2816.t1 ID=Gcaud2816.t1|Name=Gcaud2816.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at NODE_483_length_24135_cov_4.702961:10128..11471- (Gracilaria caudata M_176_S67 male)
ATGCTTCTCGACTCTAAAGAAAAATCTCTGCCACCTTATCTAAAAGTTCG
ATCAAAACATGAAAACATCTATAATTTTGGACATATTCGAAACGATGATC
CCGAATTCGTTTCTCGCCTTGAAAAAAGAAAACTAGAAACTCATAGAGGT
GTTCACGTTTACTTTAAGCAGCCATGGTGTGTTAACATTGGCCATGCGCT
TTTCGATGGCTTATATGCGGCTTGGGTAGCTTTAGTAGTTGTTGGGAGGG
AAAAGATATCCCAATTCACTATAATTGTAAATAAGAACAGTACCTCAAAA
TGGAAGTTTCAAGCAGACTACGTATTTAAGAAGTTTGGAGGCACGAACAG
ATTTTATGATGAGCACGAACTGCTCAGTCCGTCTGCGTTCCATAGATTTG
ATGTCGTGGTCATGGGAACTAGTGGAAAGGGCCAAAGATGGATGACAAAG
GATTTGAAAATACCAGGAGCTGAGTTTAATGCTCCAAAGCTTTTCAGAAA
TCGCATGTATTCAGTGTTTGGAGTCAAAATGAGGAAATGGTCGAAACGAA
ACAGAACCGATATAAAGACTATAATAGTTCACAATAAGAGATACGACCAT
CGGGAAGTCAGGGAGCTTATAAACTTGACATACGTCGGAAAATCTGCTGG
ATTTAACATAGATTATATTGATTGGTCGTCCATTGGTGAATATCCTAATA
ACTTTGGAGAACATTTAAGAATTTTGAGCCGTACAGACGTTTATATCTCT
GGGCCCGGAACTGGAATGATGTACGCACCATTCCTCCCTGACAAAGCTAT
TTTTGTTGCCCTGGGGACATGGCAGGAAAGCAATGGAGATCGCTTTGTCG
CCTTTATGGAGCAGAATGTCGTCGAAGGTTGCTCTTTTCTAATGTCACTT
TACTATCCAAGCAGTTTAAGACCAACAGGAATCAAATTACAAATAGTGGC
CGGGCTTTATGATACAGCGCTAGATATAGTACAGAAAGGGTTTCGAATAC
CCGTCAAACCTGGCTTAAATTTATCTCCAGAGGGCCAAGTCTTCAGAGAA
GCCTGTCTTGAGCTACCGACGGAATGCAGCTACGTTTTAGATGCTGCGAA
CGGTATAAACAATCTTGAAGGATGCGTGTATTACGGTTGGGCAGATTGCA
TGGTGTACGAAGTTGGAGCTTTCAAGGCAAATAAGTTGTACAAAGACACT
CCGTGCATGCCTTGGAAATTTAGAGAAAAGATTCAGGCCATTGCCTCAAG
AAGAAGAGATTCATTACATGACCTTTCTACCCCTTGCAAAGATTCTGTTT
GCCCTGTTGACCAAATTCAGTCTCATATTGCCAAGAACTGGTGA

Coding sequence (CDS) from alignment at NODE_483_length_24135_cov_4.702961:10128..11471-

>Gcaud2816.t1 ID=Gcaud2816.t1|Name=Gcaud2816.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1344bp|location=Sequence derived from alignment at NODE_483_length_24135_cov_4.702961:10128..11471- (Gracilaria caudata M_176_S67 male)
ATGCTTCTCGACTCTAAAGAAAAATCTCTGCCACCTTATCTAAAAGTTCG
ATCAAAACATGAAAACATCTATAATTTTGGACATATTCGAAACGATGATC
CCGAATTCGTTTCTCGCCTTGAAAAAAGAAAACTAGAAACTCATAGAGGT
GTTCACGTTTACTTTAAGCAGCCATGGTGTGTTAACATTGGCCATGCGCT
TTTCGATGGCTTATATGCGGCTTGGGTAGCTTTAGTAGTTGTTGGGAGGG
AAAAGATATCCCAATTCACTATAATTGTAAATAAGAACAGTACCTCAAAA
TGGAAGTTTCAAGCAGACTACGTATTTAAGAAGTTTGGAGGCACGAACAG
ATTTTATGATGAGCACGAACTGCTCAGTCCGTCTGCGTTCCATAGATTTG
ATGTCGTGGTCATGGGAACTAGTGGAAAGGGCCAAAGATGGATGACAAAG
GATTTGAAAATACCAGGAGCTGAGTTTAATGCTCCAAAGCTTTTCAGAAA
TCGCATGTATTCAGTGTTTGGAGTCAAAATGAGGAAATGGTCGAAACGAA
ACAGAACCGATATAAAGACTATAATAGTTCACAATAAGAGATACGACCAT
CGGGAAGTCAGGGAGCTTATAAACTTGACATACGTCGGAAAATCTGCTGG
ATTTAACATAGATTATATTGATTGGTCGTCCATTGGTGAATATCCTAATA
ACTTTGGAGAACATTTAAGAATTTTGAGCCGTACAGACGTTTATATCTCT
GGGCCCGGAACTGGAATGATGTACGCACCATTCCTCCCTGACAAAGCTAT
TTTTGTTGCCCTGGGGACATGGCAGGAAAGCAATGGAGATCGCTTTGTCG
CCTTTATGGAGCAGAATGTCGTCGAAGGTTGCTCTTTTCTAATGTCACTT
TACTATCCAAGCAGTTTAAGACCAACAGGAATCAAATTACAAATAGTGGC
CGGGCTTTATGATACAGCGCTAGATATAGTACAGAAAGGGTTTCGAATAC
CCGTCAAACCTGGCTTAAATTTATCTCCAGAGGGCCAAGTCTTCAGAGAA
GCCTGTCTTGAGCTACCGACGGAATGCAGCTACGTTTTAGATGCTGCGAA
CGGTATAAACAATCTTGAAGGATGCGTGTATTACGGTTGGGCAGATTGCA
TGGTGTACGAAGTTGGAGCTTTCAAGGCAAATAAGTTGTACAAAGACACT
CCGTGCATGCCTTGGAAATTTAGAGAAAAGATTCAGGCCATTGCCTCAAG
AAGAAGAGATTCATTACATGACCTTTCTACCCCTTGCAAAGATTCTGTTT
GCCCTGTTGACCAAATTCAGTCTCATATTGCCAAGAACTGGTGA