Gcaud2802.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2802.t1
Unique Name	Gcaud2802.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	683

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_127_length_46135_cov_4.421901	contig	NODE_127_length_46135_cov_4.421901:32750..34798 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX47076
Preferred name	FTSH1
PFAMs	AAA,Peptidase_M41
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03798
KEGG Module	M00742
GOs	GO:0003674,GO:0003824,GO:0004176,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009628,GO:0009642,GO:0009644,GO:0009719,GO:0009725,GO:0009735,GO:0009765,GO:0009892,GO:0009941,GO:0009987,GO:0010033,GO:0010109,GO:0010205,GO:0010206,GO:0010304,GO:0015979,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019538,GO:0019684,GO:0022607,GO:0030091,GO:0030163,GO:0031323,GO:0031324,GO:0031967,GO:0031975,GO:0031976,GO:0031977,GO:0031984,GO:0034357,GO:0034622,GO:0042221,GO:0042548,GO:0042623,GO:0042651,GO:0043155,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043467,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0048564,GO:0050789,GO:0050794,GO:0050896,GO:0055035,GO:0065003,GO:0065007,GO:0070011,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1905156
Evalue	0.0
EggNOG OGs	COG0465@1\|root,KOG0731@2759\|Eukaryota
Description	metalloendopeptidase activity
COG category	O
BRITE	ko00000,ko00002,ko01000,ko01002,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2802	Gcaud2802	Gracilaria caudata M_176_S67 male	gene	NODE_127_length_46135_cov_4.421901 32750..34798 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2802.t1.stop1	Gcaud2802.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_127_length_46135_cov_4.421901 32750..32752 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2802.t1.CDS1	Gcaud2802.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_127_length_46135_cov_4.421901 32750..34798 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2802.t1.exon1	Gcaud2802.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_127_length_46135_cov_4.421901 32750..34798 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2802.t1.start1	Gcaud2802.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_127_length_46135_cov_4.421901 34796..34798 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2802.t1	Gcaud2802.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_127_length_46135_cov_4.421901 32750..34798 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_127_length_46135_cov_4.421901:32750..34798-
coding sequence from alignment at NODE_127_length_46135_cov_4.421901:32750..34798-

mRNA sequence

>Gcaud2802.t1 ID=Gcaud2802.t1|Name=Gcaud2802.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=683bp
MSKASPSPSLPAILLDSQSSNRLQRVATLLSQELNRTASLAAAAAILAAV
ATNASPVHAAADPVQMTGMRQETSAAATRSMSSENSPAPVSNGVQDWRYS
QFINAVEKDQVEKVTFSADGQRLLAVDTDGNRFKLDALPNDPDLLKTLTG
HKVDVTVLPSQPESGAGDFIRSLIFPALLFGGLFLLSRRAGGAGGGFGPM
GGPMDLQRSGARVSMVPETGITFKDVAGVDGAKLELQEVVQFLKESERFT
ELGAKIPRGVILEGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGV
GASRVRDLFANAKKNAPCIIFIDEIDAVGRQRGAGIAGGNDEREQTLNQM
LTEMDGFEGNSGVIVIAATNRADVLDNALLRPGRFDRRVIVDLPDFNGRV
AILKVHARGKPLAKDVDIEQIARRTPGFSGASLQNLLNEAAIFTARRQKT
EIGPDEVSDAIDRITIGAEKKETVMSPQRQKLVAYHEAGHAIVGALTPDY
DQVAKISIIPRGGAGGLTFFAPNEQRVDTGLYSRQFLEGQLAVALGGRIA
EELVFGDEKVTTGASNDLQRVTQVAKQMVTRFGMSQKVGQLSLNTDGGNP
FLGRQMASGSPQMSSVLKAEIDEEVRRLVNVAYTRAKSLLTSNRQLLDAL
ANLLIEKETVSAEEFQRLIAENKIEMMPYAAY*

spliced messenger RNA

>Gcaud2802.t1 ID=Gcaud2802.t1|Name=Gcaud2802.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2049bp|location=Sequence derived from alignment at NODE_127_length_46135_cov_4.421901:32750..34798- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAAGGCTTCTCCGTCCCCCTCCCTGCCAGCAATACTTCTCGACAG
TCAATCGAGCAACCGTCTGCAGCGAGTGGCGACCTTACTCTCGCAAGAGT
TGAATCGTACCGCATCTCTCGCCGCAGCTGCAGCCATCTTAGCAGCCGTT
GCGACCAATGCTTCCCCTGTTCACGCTGCGGCCGATCCCGTGCAAATGAC
AGGCATGCGACAAGAAACAAGCGCCGCGGCAACCCGGTCGATGTCATCGG
AGAATTCACCCGCACCGGTATCCAATGGCGTTCAGGACTGGCGTTATTCG
CAGTTCATCAATGCCGTGGAGAAAGACCAGGTGGAAAAGGTAACCTTTTC
GGCTGATGGCCAGCGTCTTCTTGCCGTCGATACTGATGGCAACCGATTTA
AGCTTGATGCTTTGCCCAACGACCCGGACTTGTTGAAAACACTTACCGGT
CATAAGGTCGATGTAACTGTGCTTCCGTCTCAACCCGAATCTGGTGCAGG
CGACTTTATCCGCTCGCTCATATTCCCAGCTCTGCTTTTCGGTGGTTTGT
TCTTGCTCTCTCGTCGCGCAGGAGGTGCTGGCGGTGGTTTCGGACCAATG
GGTGGTCCGATGGATTTGCAGCGTTCCGGAGCGCGCGTTTCAATGGTCCC
CGAGACCGGCATTACCTTCAAAGACGTCGCGGGTGTAGACGGTGCCAAAC
TTGAACTTCAAGAAGTCGTTCAGTTCCTTAAAGAATCTGAGCGTTTTACC
GAACTAGGAGCTAAGATTCCACGCGGCGTCATCTTGGAAGGTCCTCCAGG
AACTGGAAAGACCCTTCTGGCTCGTGCTGTCGCGGGAGAAGCGGGTGTAC
CGTTCTTTTCAATTTCGGGCTCCGAGTTTGTCGAGATGTTTGTCGGTGTG
GGTGCTTCTCGTGTCAGGGATCTTTTCGCGAATGCTAAGAAGAACGCCCC
GTGCATTATCTTTATTGATGAAATTGATGCGGTTGGTCGTCAACGTGGAG
CTGGTATTGCAGGAGGAAATGACGAGCGTGAACAGACGCTTAACCAAATG
CTTACCGAAATGGACGGCTTTGAAGGTAATTCTGGAGTGATTGTCATTGC
TGCGACGAACAGAGCCGATGTCCTTGACAATGCCCTTCTTCGACCGGGAC
GTTTTGATCGCCGCGTCATAGTTGACCTTCCAGACTTCAACGGACGTGTT
GCAATTCTTAAGGTTCATGCACGCGGGAAACCATTGGCGAAGGATGTCGA
CATTGAACAGATTGCGCGCCGTACTCCTGGGTTTTCTGGGGCTTCTCTGC
AGAACCTTCTCAACGAGGCTGCTATCTTCACGGCTCGTCGCCAGAAGACC
GAGATTGGTCCGGATGAAGTGAGCGATGCCATCGACCGTATCACTATAGG
GGCTGAGAAGAAAGAAACCGTCATGTCACCTCAGCGTCAGAAGCTCGTCG
CGTACCACGAAGCTGGTCACGCCATTGTCGGCGCGTTGACACCTGACTAC
GATCAAGTTGCTAAGATTAGCATCATTCCAAGAGGTGGTGCCGGTGGACT
AACCTTCTTTGCACCAAACGAGCAAAGAGTCGACACTGGTCTGTACTCAC
GACAATTCCTCGAGGGACAGCTTGCCGTTGCTCTGGGCGGACGCATCGCA
GAGGAACTGGTGTTTGGAGACGAGAAGGTGACAACTGGTGCCTCTAATGA
TCTTCAAAGAGTTACCCAAGTTGCGAAACAAATGGTAACAAGGTTCGGCA
TGTCGCAAAAGGTCGGTCAATTATCGCTCAACACCGACGGTGGAAATCCG
TTCCTCGGACGTCAAATGGCAAGCGGTTCGCCGCAAATGAGCTCAGTACT
CAAAGCAGAAATAGATGAAGAGGTCCGACGTCTAGTGAACGTTGCGTACA
CTAGGGCGAAGAGTCTTCTGACTAGCAACAGGCAATTGCTCGATGCGCTG
GCTAACCTGCTGATAGAGAAAGAAACTGTGTCGGCCGAAGAATTCCAGAG
ACTGATAGCTGAGAATAAGATCGAAATGATGCCTTACGCTGCCTATTAA

protein sequence of Gcaud2802.t1

>Gcaud2802.t1 ID=Gcaud2802.t1|Name=Gcaud2802.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=683bp
MSKASPSPSLPAILLDSQSSNRLQRVATLLSQELNRTASLAAAAAILAAV
ATNASPVHAAADPVQMTGMRQETSAAATRSMSSENSPAPVSNGVQDWRYS
QFINAVEKDQVEKVTFSADGQRLLAVDTDGNRFKLDALPNDPDLLKTLTG
HKVDVTVLPSQPESGAGDFIRSLIFPALLFGGLFLLSRRAGGAGGGFGPM
GGPMDLQRSGARVSMVPETGITFKDVAGVDGAKLELQEVVQFLKESERFT
ELGAKIPRGVILEGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGV
GASRVRDLFANAKKNAPCIIFIDEIDAVGRQRGAGIAGGNDEREQTLNQM
LTEMDGFEGNSGVIVIAATNRADVLDNALLRPGRFDRRVIVDLPDFNGRV
AILKVHARGKPLAKDVDIEQIARRTPGFSGASLQNLLNEAAIFTARRQKT
EIGPDEVSDAIDRITIGAEKKETVMSPQRQKLVAYHEAGHAIVGALTPDY
DQVAKISIIPRGGAGGLTFFAPNEQRVDTGLYSRQFLEGQLAVALGGRIA
EELVFGDEKVTTGASNDLQRVTQVAKQMVTRFGMSQKVGQLSLNTDGGNP
FLGRQMASGSPQMSSVLKAEIDEEVRRLVNVAYTRAKSLLTSNRQLLDAL
ANLLIEKETVSAEEFQRLIAENKIEMMPYAAY*

mRNA from alignment at NODE_127_length_46135_cov_4.421901:32750..34798-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2802.t1 ID=Gcaud2802.t1|Name=Gcaud2802.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2049bp|location=Sequence derived from alignment at NODE_127_length_46135_cov_4.421901:32750..34798- (Gracilaria caudata M_176_S67 male)
ATGAGCAAGGCTTCTCCGTCCCCCTCCCTGCCAGCAATACTTCTCGACAG
TCAATCGAGCAACCGTCTGCAGCGAGTGGCGACCTTACTCTCGCAAGAGT
TGAATCGTACCGCATCTCTCGCCGCAGCTGCAGCCATCTTAGCAGCCGTT
GCGACCAATGCTTCCCCTGTTCACGCTGCGGCCGATCCCGTGCAAATGAC
AGGCATGCGACAAGAAACAAGCGCCGCGGCAACCCGGTCGATGTCATCGG
AGAATTCACCCGCACCGGTATCCAATGGCGTTCAGGACTGGCGTTATTCG
CAGTTCATCAATGCCGTGGAGAAAGACCAGGTGGAAAAGGTAACCTTTTC
GGCTGATGGCCAGCGTCTTCTTGCCGTCGATACTGATGGCAACCGATTTA
AGCTTGATGCTTTGCCCAACGACCCGGACTTGTTGAAAACACTTACCGGT
CATAAGGTCGATGTAACTGTGCTTCCGTCTCAACCCGAATCTGGTGCAGG
CGACTTTATCCGCTCGCTCATATTCCCAGCTCTGCTTTTCGGTGGTTTGT
TCTTGCTCTCTCGTCGCGCAGGAGGTGCTGGCGGTGGTTTCGGACCAATG
GGTGGTCCGATGGATTTGCAGCGTTCCGGAGCGCGCGTTTCAATGGTCCC
CGAGACCGGCATTACCTTCAAAGACGTCGCGGGTGTAGACGGTGCCAAAC
TTGAACTTCAAGAAGTCGTTCAGTTCCTTAAAGAATCTGAGCGTTTTACC
GAACTAGGAGCTAAGATTCCACGCGGCGTCATCTTGGAAGGTCCTCCAGG
AACTGGAAAGACCCTTCTGGCTCGTGCTGTCGCGGGAGAAGCGGGTGTAC
CGTTCTTTTCAATTTCGGGCTCCGAGTTTGTCGAGATGTTTGTCGGTGTG
GGTGCTTCTCGTGTCAGGGATCTTTTCGCGAATGCTAAGAAGAACGCCCC
GTGCATTATCTTTATTGATGAAATTGATGCGGTTGGTCGTCAACGTGGAG
CTGGTATTGCAGGAGGAAATGACGAGCGTGAACAGACGCTTAACCAAATG
CTTACCGAAATGGACGGCTTTGAAGGTAATTCTGGAGTGATTGTCATTGC
TGCGACGAACAGAGCCGATGTCCTTGACAATGCCCTTCTTCGACCGGGAC
GTTTTGATCGCCGCGTCATAGTTGACCTTCCAGACTTCAACGGACGTGTT
GCAATTCTTAAGGTTCATGCACGCGGGAAACCATTGGCGAAGGATGTCGA
CATTGAACAGATTGCGCGCCGTACTCCTGGGTTTTCTGGGGCTTCTCTGC
AGAACCTTCTCAACGAGGCTGCTATCTTCACGGCTCGTCGCCAGAAGACC
GAGATTGGTCCGGATGAAGTGAGCGATGCCATCGACCGTATCACTATAGG
GGCTGAGAAGAAAGAAACCGTCATGTCACCTCAGCGTCAGAAGCTCGTCG
CGTACCACGAAGCTGGTCACGCCATTGTCGGCGCGTTGACACCTGACTAC
GATCAAGTTGCTAAGATTAGCATCATTCCAAGAGGTGGTGCCGGTGGACT
AACCTTCTTTGCACCAAACGAGCAAAGAGTCGACACTGGTCTGTACTCAC
GACAATTCCTCGAGGGACAGCTTGCCGTTGCTCTGGGCGGACGCATCGCA
GAGGAACTGGTGTTTGGAGACGAGAAGGTGACAACTGGTGCCTCTAATGA
TCTTCAAAGAGTTACCCAAGTTGCGAAACAAATGGTAACAAGGTTCGGCA
TGTCGCAAAAGGTCGGTCAATTATCGCTCAACACCGACGGTGGAAATCCG
TTCCTCGGACGTCAAATGGCAAGCGGTTCGCCGCAAATGAGCTCAGTACT
CAAAGCAGAAATAGATGAAGAGGTCCGACGTCTAGTGAACGTTGCGTACA
CTAGGGCGAAGAGTCTTCTGACTAGCAACAGGCAATTGCTCGATGCGCTG
GCTAACCTGCTGATAGAGAAAGAAACTGTGTCGGCCGAAGAATTCCAGAG
ACTGATAGCTGAGAATAAGATCGAAATGATGCCTTACGCTGCCTATTAA

Coding sequence (CDS) from alignment at NODE_127_length_46135_cov_4.421901:32750..34798-

>Gcaud2802.t1 ID=Gcaud2802.t1|Name=Gcaud2802.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2049bp|location=Sequence derived from alignment at NODE_127_length_46135_cov_4.421901:32750..34798- (Gracilaria caudata M_176_S67 male)
ATGAGCAAGGCTTCTCCGTCCCCCTCCCTGCCAGCAATACTTCTCGACAG
TCAATCGAGCAACCGTCTGCAGCGAGTGGCGACCTTACTCTCGCAAGAGT
TGAATCGTACCGCATCTCTCGCCGCAGCTGCAGCCATCTTAGCAGCCGTT
GCGACCAATGCTTCCCCTGTTCACGCTGCGGCCGATCCCGTGCAAATGAC
AGGCATGCGACAAGAAACAAGCGCCGCGGCAACCCGGTCGATGTCATCGG
AGAATTCACCCGCACCGGTATCCAATGGCGTTCAGGACTGGCGTTATTCG
CAGTTCATCAATGCCGTGGAGAAAGACCAGGTGGAAAAGGTAACCTTTTC
GGCTGATGGCCAGCGTCTTCTTGCCGTCGATACTGATGGCAACCGATTTA
AGCTTGATGCTTTGCCCAACGACCCGGACTTGTTGAAAACACTTACCGGT
CATAAGGTCGATGTAACTGTGCTTCCGTCTCAACCCGAATCTGGTGCAGG
CGACTTTATCCGCTCGCTCATATTCCCAGCTCTGCTTTTCGGTGGTTTGT
TCTTGCTCTCTCGTCGCGCAGGAGGTGCTGGCGGTGGTTTCGGACCAATG
GGTGGTCCGATGGATTTGCAGCGTTCCGGAGCGCGCGTTTCAATGGTCCC
CGAGACCGGCATTACCTTCAAAGACGTCGCGGGTGTAGACGGTGCCAAAC
TTGAACTTCAAGAAGTCGTTCAGTTCCTTAAAGAATCTGAGCGTTTTACC
GAACTAGGAGCTAAGATTCCACGCGGCGTCATCTTGGAAGGTCCTCCAGG
AACTGGAAAGACCCTTCTGGCTCGTGCTGTCGCGGGAGAAGCGGGTGTAC
CGTTCTTTTCAATTTCGGGCTCCGAGTTTGTCGAGATGTTTGTCGGTGTG
GGTGCTTCTCGTGTCAGGGATCTTTTCGCGAATGCTAAGAAGAACGCCCC
GTGCATTATCTTTATTGATGAAATTGATGCGGTTGGTCGTCAACGTGGAG
CTGGTATTGCAGGAGGAAATGACGAGCGTGAACAGACGCTTAACCAAATG
CTTACCGAAATGGACGGCTTTGAAGGTAATTCTGGAGTGATTGTCATTGC
TGCGACGAACAGAGCCGATGTCCTTGACAATGCCCTTCTTCGACCGGGAC
GTTTTGATCGCCGCGTCATAGTTGACCTTCCAGACTTCAACGGACGTGTT
GCAATTCTTAAGGTTCATGCACGCGGGAAACCATTGGCGAAGGATGTCGA
CATTGAACAGATTGCGCGCCGTACTCCTGGGTTTTCTGGGGCTTCTCTGC
AGAACCTTCTCAACGAGGCTGCTATCTTCACGGCTCGTCGCCAGAAGACC
GAGATTGGTCCGGATGAAGTGAGCGATGCCATCGACCGTATCACTATAGG
GGCTGAGAAGAAAGAAACCGTCATGTCACCTCAGCGTCAGAAGCTCGTCG
CGTACCACGAAGCTGGTCACGCCATTGTCGGCGCGTTGACACCTGACTAC
GATCAAGTTGCTAAGATTAGCATCATTCCAAGAGGTGGTGCCGGTGGACT
AACCTTCTTTGCACCAAACGAGCAAAGAGTCGACACTGGTCTGTACTCAC
GACAATTCCTCGAGGGACAGCTTGCCGTTGCTCTGGGCGGACGCATCGCA
GAGGAACTGGTGTTTGGAGACGAGAAGGTGACAACTGGTGCCTCTAATGA
TCTTCAAAGAGTTACCCAAGTTGCGAAACAAATGGTAACAAGGTTCGGCA
TGTCGCAAAAGGTCGGTCAATTATCGCTCAACACCGACGGTGGAAATCCG
TTCCTCGGACGTCAAATGGCAAGCGGTTCGCCGCAAATGAGCTCAGTACT
CAAAGCAGAAATAGATGAAGAGGTCCGACGTCTAGTGAACGTTGCGTACA
CTAGGGCGAAGAGTCTTCTGACTAGCAACAGGCAATTGCTCGATGCGCTG
GCTAACCTGCTGATAGAGAAAGAAACTGTGTCGGCCGAAGAATTCCAGAG
ACTGATAGCTGAGAATAAGATCGAAATGATGCCTTACGCTGCCTATTAA