Gcaud279.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud279.t1
Unique Name	Gcaud279.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	350

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_6057_length_1305_cov_5.335255	contig	NODE_6057_length_1305_cov_5.335255:258..1305 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud279	Gcaud279	Gracilaria caudata M_176_S67 male	gene	NODE_6057_length_1305_cov_5.335255 258..1305 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud279.t1.CDS1	Gcaud279.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_6057_length_1305_cov_5.335255 258..1305 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud279.t1.exon1	Gcaud279.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_6057_length_1305_cov_5.335255 258..1305 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud279.t1	Gcaud279.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_6057_length_1305_cov_5.335255 258..1305 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_6057_length_1305_cov_5.335255:258..1305+
coding sequence from alignment at NODE_6057_length_1305_cov_5.335255:258..1305+

mRNA sequence

>Gcaud279.t1 ID=Gcaud279.t1|Name=Gcaud279.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=350bp
XDGKQPQSTSHDENLGGKSVESNSGNEDQESDLMEPPAVVHVLSTRLTES
EVQKGRYQSPGLGHYSSRTTSASDKNSGGSDGSITADIVTLDIAKDDVDN
ESQRDEIDDNVAEILMLKHVKSSRIAQPKVDGLQIPGMDDDRIPVLGLGF
VANGNRLNDSPPRSNTMMLESFVSPFAGAQFAESRVTDENGRKEYTKTSS
VSQPEDNHIAGAEVTKVEMEKHGTDLQGAIPFPSIDIGAVLAEPSRPSPI
KPQTPSNGSASSSKGTTPNGQERFSPEKRTMNSCSSPDNIEIEQKDLFEL
KQNDKLAFVDSTVNGSHQAVSQNSPGSVSAQAAFNNQVHVPPSTSTPPSD

spliced messenger RNA

>Gcaud279.t1 ID=Gcaud279.t1|Name=Gcaud279.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1048bp|location=Sequence derived from alignment at NODE_6057_length_1305_cov_5.335255:258..1305+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CGACGGAAAGCAACCCCAGTCGACTTCCCATGATGAGAACTTGGGAGGAA
AAAGCGTAGAATCAAACTCGGGCAATGAGGACCAAGAGTCAGACTTGATG
GAACCACCTGCAGTCGTACATGTTCTAAGCACGAGATTGACCGAATCTGA
AGTTCAGAAGGGTCGATACCAATCTCCTGGTCTAGGTCATTACTCATCGA
GAACCACCTCCGCGTCTGACAAGAATTCCGGCGGTAGCGACGGAAGCATA
ACCGCGGATATAGTAACTCTCGATATTGCAAAAGACGATGTTGATAACGA
GAGTCAAAGAGATGAAATTGATGACAATGTAGCCGAAATTTTGATGTTGA
AGCACGTGAAGAGTAGCAGAATCGCGCAACCGAAAGTCGATGGGTTACAA
ATACCAGGAATGGATGATGATCGGATACCGGTTTTGGGCCTTGGTTTTGT
CGCCAACGGCAATAGATTGAACGACAGTCCACCACGATCCAACACGATGA
TGCTCGAATCCTTTGTTTCTCCTTTCGCAGGTGCACAGTTTGCAGAGTCG
AGAGTGACTGATGAAAATGGGAGAAAAGAATATACCAAGACTTCCAGTGT
TTCTCAACCCGAAGACAATCACATTGCGGGTGCAGAAGTCACCAAAGTTG
AGATGGAGAAGCATGGTACTGATCTCCAGGGCGCAATACCTTTCCCGAGC
ATTGACATAGGCGCTGTTCTAGCAGAGCCTTCGAGACCGAGTCCTATCAA
ACCTCAGACACCTTCGAACGGCAGCGCTTCTTCATCAAAAGGCACGACCC
CTAACGGCCAGGAAAGGTTTAGCCCGGAAAAGAGGACGATGAACTCTTGT
TCAAGTCCAGATAACATTGAAATTGAGCAAAAGGACCTTTTCGAACTCAA
ACAGAACGACAAACTGGCTTTCGTCGACAGTACAGTGAATGGGAGTCATC
AAGCCGTAAGCCAGAACAGCCCAGGAAGTGTTTCGGCTCAGGCCGCGTTT
AACAATCAAGTTCATGTTCCGCCCTCAACATCCACACCACCATCGGAC

protein sequence of Gcaud279.t1

>Gcaud279.t1 ID=Gcaud279.t1|Name=Gcaud279.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=350bp
XDGKQPQSTSHDENLGGKSVESNSGNEDQESDLMEPPAVVHVLSTRLTES
EVQKGRYQSPGLGHYSSRTTSASDKNSGGSDGSITADIVTLDIAKDDVDN
ESQRDEIDDNVAEILMLKHVKSSRIAQPKVDGLQIPGMDDDRIPVLGLGF
VANGNRLNDSPPRSNTMMLESFVSPFAGAQFAESRVTDENGRKEYTKTSS
VSQPEDNHIAGAEVTKVEMEKHGTDLQGAIPFPSIDIGAVLAEPSRPSPI
KPQTPSNGSASSSKGTTPNGQERFSPEKRTMNSCSSPDNIEIEQKDLFEL
KQNDKLAFVDSTVNGSHQAVSQNSPGSVSAQAAFNNQVHVPPSTSTPPSD

mRNA from alignment at NODE_6057_length_1305_cov_5.335255:258..1305+

Legend: CDSpolypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud279.t1 ID=Gcaud279.t1|Name=Gcaud279.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1048bp|location=Sequence derived from alignment at NODE_6057_length_1305_cov_5.335255:258..1305+ (Gracilaria caudata M_176_S67 male)
CGACGGAAAGCAACCCCAGTCGACTTCCCATGATGAGAACTTGGGAGGAA
AAAGCGTAGAATCAAACTCGGGCAATGAGGACCAAGAGTCAGACTTGATG
GAACCACCTGCAGTCGTACATGTTCTAAGCACGAGATTGACCGAATCTGA
AGTTCAGAAGGGTCGATACCAATCTCCTGGTCTAGGTCATTACTCATCGA
GAACCACCTCCGCGTCTGACAAGAATTCCGGCGGTAGCGACGGAAGCATA
ACCGCGGATATAGTAACTCTCGATATTGCAAAAGACGATGTTGATAACGA
GAGTCAAAGAGATGAAATTGATGACAATGTAGCCGAAATTTTGATGTTGA
AGCACGTGAAGAGTAGCAGAATCGCGCAACCGAAAGTCGATGGGTTACAA
ATACCAGGAATGGATGATGATCGGATACCGGTTTTGGGCCTTGGTTTTGT
CGCCAACGGCAATAGATTGAACGACAGTCCACCACGATCCAACACGATGA
TGCTCGAATCCTTTGTTTCTCCTTTCGCAGGTGCACAGTTTGCAGAGTCG
AGAGTGACTGATGAAAATGGGAGAAAAGAATATACCAAGACTTCCAGTGT
TTCTCAACCCGAAGACAATCACATTGCGGGTGCAGAAGTCACCAAAGTTG
AGATGGAGAAGCATGGTACTGATCTCCAGGGCGCAATACCTTTCCCGAGC
ATTGACATAGGCGCTGTTCTAGCAGAGCCTTCGAGACCGAGTCCTATCAA
ACCTCAGACACCTTCGAACGGCAGCGCTTCTTCATCAAAAGGCACGACCC
CTAACGGCCAGGAAAGGTTTAGCCCGGAAAAGAGGACGATGAACTCTTGT
TCAAGTCCAGATAACATTGAAATTGAGCAAAAGGACCTTTTCGAACTCAA
ACAGAACGACAAACTGGCTTTCGTCGACAGTACAGTGAATGGGAGTCATC
AAGCCGTAAGCCAGAACAGCCCAGGAAGTGTTTCGGCTCAGGCCGCGTTT
AACAATCAAGTTCATGTTCCGCCCTCAACATCCACACCACCATCGGAC

Coding sequence (CDS) from alignment at NODE_6057_length_1305_cov_5.335255:258..1305+

>Gcaud279.t1 ID=Gcaud279.t1|Name=Gcaud279.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1048bp|location=Sequence derived from alignment at NODE_6057_length_1305_cov_5.335255:258..1305+ (Gracilaria caudata M_176_S67 male)
CGACGGAAAGCAACCCCAGTCGACTTCCCATGATGAGAACTTGGGAGGAA
AAAGCGTAGAATCAAACTCGGGCAATGAGGACCAAGAGTCAGACTTGATG
GAACCACCTGCAGTCGTACATGTTCTAAGCACGAGATTGACCGAATCTGA
AGTTCAGAAGGGTCGATACCAATCTCCTGGTCTAGGTCATTACTCATCGA
GAACCACCTCCGCGTCTGACAAGAATTCCGGCGGTAGCGACGGAAGCATA
ACCGCGGATATAGTAACTCTCGATATTGCAAAAGACGATGTTGATAACGA
GAGTCAAAGAGATGAAATTGATGACAATGTAGCCGAAATTTTGATGTTGA
AGCACGTGAAGAGTAGCAGAATCGCGCAACCGAAAGTCGATGGGTTACAA
ATACCAGGAATGGATGATGATCGGATACCGGTTTTGGGCCTTGGTTTTGT
CGCCAACGGCAATAGATTGAACGACAGTCCACCACGATCCAACACGATGA
TGCTCGAATCCTTTGTTTCTCCTTTCGCAGGTGCACAGTTTGCAGAGTCG
AGAGTGACTGATGAAAATGGGAGAAAAGAATATACCAAGACTTCCAGTGT
TTCTCAACCCGAAGACAATCACATTGCGGGTGCAGAAGTCACCAAAGTTG
AGATGGAGAAGCATGGTACTGATCTCCAGGGCGCAATACCTTTCCCGAGC
ATTGACATAGGCGCTGTTCTAGCAGAGCCTTCGAGACCGAGTCCTATCAA
ACCTCAGACACCTTCGAACGGCAGCGCTTCTTCATCAAAAGGCACGACCC
CTAACGGCCAGGAAAGGTTTAGCCCGGAAAAGAGGACGATGAACTCTTGT
TCAAGTCCAGATAACATTGAAATTGAGCAAAAGGACCTTTTCGAACTCAA
ACAGAACGACAAACTGGCTTTCGTCGACAGTACAGTGAATGGGAGTCATC
AAGCCGTAAGCCAGAACAGCCCAGGAAGTGTTTCGGCTCAGGCCGCGTTT
AACAATCAAGTTCATGTTCCGCCCTCAACATCCACACCACCATCGGAC