Gcaud2787.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2787.t1
Unique NameGcaud2787.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length140
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_127_length_46135_cov_4.421901contigNODE_127_length_46135_cov_4.421901:2555..3063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1117318.PRUB_23296
PFAMsDUF1761
Max annot lvl1236|Gammaproteobacteria
Evalue4.41e-06
EggNOG OGs29E7I@1|root,3015I@2|Bacteria,1NCJP@1224|Proteobacteria,1SB4D@1236|Gammaproteobacteria,2Q34Y@267888|Pseudoalteromonadaceae
DescriptionProtein of unknown function (DUF1761)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2787Gcaud2787Gracilaria caudata M_176_S67 malegeneNODE_127_length_46135_cov_4.421901 2555..3063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2787.t1Gcaud2787.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_127_length_46135_cov_4.421901 2555..3063 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2787.t1.start1Gcaud2787.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_127_length_46135_cov_4.421901 2555..2557 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2787.t1.CDS1Gcaud2787.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_127_length_46135_cov_4.421901 2555..2629 +
Gcaud2787.t1.CDS2Gcaud2787.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_127_length_46135_cov_4.421901 2719..3063 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2787.t1.exon1Gcaud2787.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_127_length_46135_cov_4.421901 2555..2629 +
Gcaud2787.t1.exon2Gcaud2787.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_127_length_46135_cov_4.421901 2719..3063 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2787.t1.intron1Gcaud2787.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_127_length_46135_cov_4.421901 2630..2718 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2787.t1.stop1Gcaud2787.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_127_length_46135_cov_4.421901 3061..3063 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2787.t1 ID=Gcaud2787.t1|Name=Gcaud2787.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=140bp
MAAVFDFVSFPAFFIGWIVHMTMGMIWYSTPVFGKAFVQLALKGKMPVKP
DPRAMFAAVLGTATAIPFFSFLLRVANCRGAGEGALWGLAFGVFFDSGLN
ASHSFFENRPFALFVLHRGYHCVSLALVGAVLGRLCGVA*
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spliced messenger RNA

>Gcaud2787.t1 ID=Gcaud2787.t1|Name=Gcaud2787.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=420bp|location=Sequence derived from alignment at NODE_127_length_46135_cov_4.421901:2555..3063+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCAGTTTTCGATTTCGTCAGTTTCCCAGCGTTCTTCATCGGCTG
GATAGTGCACATGACCATGGGCATGATTTGGTACTCAACGCCCGTGTTTG
GAAAGGCGTTCGTGCAGCTCGCTCTCAAAGGTAAGATGCCAGTAAAACCT
GACCCCCGTGCAATGTTTGCGGCCGTGTTAGGCACTGCCACCGCAATTCC
GTTCTTCTCGTTTCTGTTGCGGGTGGCTAATTGTCGCGGCGCTGGTGAGG
GTGCGTTGTGGGGTTTGGCGTTCGGTGTTTTCTTTGATTCGGGGTTGAAT
GCATCGCATTCCTTCTTTGAGAATCGACCTTTCGCGCTCTTCGTTTTGCA
TAGAGGTTATCATTGTGTGAGTCTGGCTCTTGTGGGAGCGGTGCTTGGTC
GCCTTTGTGGCGTTGCATAG
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protein sequence of Gcaud2787.t1

>Gcaud2787.t1 ID=Gcaud2787.t1|Name=Gcaud2787.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=140bp
MAAVFDFVSFPAFFIGWIVHMTMGMIWYSTPVFGKAFVQLALKGKMPVKP
DPRAMFAAVLGTATAIPFFSFLLRVANCRGAGEGALWGLAFGVFFDSGLN
ASHSFFENRPFALFVLHRGYHCVSLALVGAVLGRLCGVA*
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mRNA from alignment at NODE_127_length_46135_cov_4.421901:2555..3063+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2787.t1 ID=Gcaud2787.t1|Name=Gcaud2787.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=509bp|location=Sequence derived from alignment at NODE_127_length_46135_cov_4.421901:2555..3063+ (Gracilaria caudata M_176_S67 male)
ATGGCCGCAGTTTTCGATTTCGTCAGTTTCCCAGCGTTCTTCATCGGCTG
GATAGTGCACATGACCATGGGCATGGTAAGCATATGAGTTGTCGTTCCTT
CGAAGACCCCATCATCATCCCTCTCATCGTTACTGACTCAATAGTCGTTT
GCGGCGTTGCCCAGATTTGGTACTCAACGCCCGTGTTTGGAAAGGCGTTC
GTGCAGCTCGCTCTCAAAGGTAAGATGCCAGTAAAACCTGACCCCCGTGC
AATGTTTGCGGCCGTGTTAGGCACTGCCACCGCAATTCCGTTCTTCTCGT
TTCTGTTGCGGGTGGCTAATTGTCGCGGCGCTGGTGAGGGTGCGTTGTGG
GGTTTGGCGTTCGGTGTTTTCTTTGATTCGGGGTTGAATGCATCGCATTC
CTTCTTTGAGAATCGACCTTTCGCGCTCTTCGTTTTGCATAGAGGTTATC
ATTGTGTGAGTCTGGCTCTTGTGGGAGCGGTGCTTGGTCGCCTTTGTGGC
GTTGCATAG
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Coding sequence (CDS) from alignment at NODE_127_length_46135_cov_4.421901:2555..3063+

>Gcaud2787.t1 ID=Gcaud2787.t1|Name=Gcaud2787.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=420bp|location=Sequence derived from alignment at NODE_127_length_46135_cov_4.421901:2555..3063+ (Gracilaria caudata M_176_S67 male)
ATGGCCGCAGTTTTCGATTTCGTCAGTTTCCCAGCGTTCTTCATCGGCTG
GATAGTGCACATGACCATGGGCATGATTTGGTACTCAACGCCCGTGTTTG
GAAAGGCGTTCGTGCAGCTCGCTCTCAAAGGTAAGATGCCAGTAAAACCT
GACCCCCGTGCAATGTTTGCGGCCGTGTTAGGCACTGCCACCGCAATTCC
GTTCTTCTCGTTTCTGTTGCGGGTGGCTAATTGTCGCGGCGCTGGTGAGG
GTGCGTTGTGGGGTTTGGCGTTCGGTGTTTTCTTTGATTCGGGGTTGAAT
GCATCGCATTCCTTCTTTGAGAATCGACCTTTCGCGCTCTTCGTTTTGCA
TAGAGGTTATCATTGTGTGAGTCTGGCTCTTGTGGGAGCGGTGCTTGGTC
GCCTTTGTGGCGTTGCATAG
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