Gcaud2784.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2784.t1
Unique Name	Gcaud2784.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	397

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1910_length_7737_cov_4.855611	contig	NODE_1910_length_7737_cov_4.855611:2640..3830 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705883.1
Preferred name	TMEM120B
PFAMs	TMPIT
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14574
KEGG Pathway	ko03008,map03008
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005637,GO:0008150,GO:0009987,GO:0012505,GO:0016020,GO:0016043,GO:0019866,GO:0022607,GO:0030154,GO:0031090,GO:0031965,GO:0031967,GO:0031975,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045444,GO:0048869,GO:0051259,GO:0051260,GO:0051291,GO:0065003,GO:0071840
Evalue	2.37e-84
EggNOG OGs	KOG4758@1\|root,KOG4758@2759\|Eukaryota
Description	fat cell differentiation
COG category	S
BRITE	ko00000,ko00001,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2784	Gcaud2784	Gracilaria caudata M_176_S67 male	gene	NODE_1910_length_7737_cov_4.855611 2640..3830 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2784.t1.start1	Gcaud2784.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1910_length_7737_cov_4.855611 2640..2642 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2784.t1.CDS1	Gcaud2784.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1910_length_7737_cov_4.855611 2640..3830 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2784.t1.exon1	Gcaud2784.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1910_length_7737_cov_4.855611 2640..3830 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2784.t1.stop1	Gcaud2784.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1910_length_7737_cov_4.855611 3828..3830 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2784.t1	Gcaud2784.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1910_length_7737_cov_4.855611 2640..3830 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1910_length_7737_cov_4.855611:2640..3830+
coding sequence from alignment at NODE_1910_length_7737_cov_4.855611:2640..3830+

mRNA sequence

>Gcaud2784.t1 ID=Gcaud2784.t1|Name=Gcaud2784.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=397bp
MVVTAGSSSSANTFDASTLNNLKASQDDLDRLADSLQSSMKELHTLQDNF
ETAVKKQQKALKVASKMCSSMTSRRRRRGQNASGDADNRSTPNERESSEL
QAPSADGSVTIEQFSEELRTISNRLHASQQLMPATGGFFVECFLGSINVR
FARKKERLSFKKEYEKLKLKLAPVFLIVTIICFFFEDYRWVHMMLQLALS
FYYTALAIRENILRVNGSNLRAWWIIHHYFTMFQGVLLLTWPNGASYAQY
RRMLHLYGMYNAILMIFQYRYQMARLYALRSLGMANEMDVASSDSTQIHW
SETMTLLLPLIVIGHFMQAFQAFYLFSLYRTFSNELQIMLLSALFLANFI
GNSITTAQVLFAKRAERKHTSRPRVPSSTPAQASSSNVAAKGDKAS*

spliced messenger RNA

>Gcaud2784.t1 ID=Gcaud2784.t1|Name=Gcaud2784.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1191bp|location=Sequence derived from alignment at NODE_1910_length_7737_cov_4.855611:2640..3830+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGTTACCGCAGGAAGTTCATCTTCCGCAAACACATTCGATGCATC
TACTTTGAATAACCTAAAGGCATCCCAAGATGATCTGGATCGTTTAGCTG
ATTCGCTGCAGTCCAGCATGAAAGAGCTTCATACTTTGCAGGATAATTTC
GAAACAGCCGTGAAGAAACAACAAAAGGCTCTCAAGGTTGCTTCTAAGAT
GTGCTCTTCAATGACATCTCGCCGAAGAAGACGTGGTCAGAATGCGAGTG
GCGATGCGGACAATCGGAGCACACCAAACGAACGAGAGTCATCTGAATTA
CAAGCACCTTCTGCAGATGGGTCGGTAACCATTGAGCAGTTTTCTGAAGA
GCTTCGTACCATTTCAAATCGATTGCATGCCAGTCAGCAGCTCATGCCTG
CAACTGGTGGGTTTTTTGTGGAGTGTTTCTTGGGTTCGATTAATGTTCGC
TTTGCTCGCAAGAAAGAACGACTTTCATTCAAGAAGGAGTACGAAAAGCT
CAAGTTGAAATTAGCGCCGGTGTTTCTCATCGTCACGATAATATGCTTCT
TTTTCGAAGACTACCGGTGGGTGCATATGATGCTTCAACTGGCGCTGTCG
TTCTACTACACCGCTCTCGCAATACGCGAAAACATCTTACGCGTCAATGG
TAGCAACCTGAGGGCGTGGTGGATCATTCACCACTATTTCACAATGTTTC
AGGGGGTTCTGCTGCTCACTTGGCCAAATGGGGCATCTTACGCGCAATAC
CGAAGAATGCTTCACCTCTACGGTATGTACAACGCTATTCTCATGATATT
CCAGTACAGATATCAAATGGCACGCCTCTATGCGCTCCGTTCGCTTGGTA
TGGCAAATGAAATGGATGTTGCGAGTTCGGACTCTACCCAAATTCACTGG
AGCGAAACCATGACCTTGTTGCTTCCTCTCATCGTCATCGGGCATTTCAT
GCAAGCCTTTCAGGCTTTTTATCTCTTCTCGCTTTATCGCACGTTCTCCA
ACGAGCTCCAAATTATGCTACTCAGTGCTCTATTTCTGGCTAATTTCATT
GGCAATTCCATTACCACAGCTCAAGTCTTGTTTGCCAAGCGTGCCGAGAG
GAAGCACACGTCTCGGCCACGAGTACCTTCGTCTACACCGGCACAGGCAT
CTTCATCGAATGTTGCTGCCAAAGGTGACAAGGCTTCATAG

protein sequence of Gcaud2784.t1

>Gcaud2784.t1 ID=Gcaud2784.t1|Name=Gcaud2784.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=397bp
MVVTAGSSSSANTFDASTLNNLKASQDDLDRLADSLQSSMKELHTLQDNF
ETAVKKQQKALKVASKMCSSMTSRRRRRGQNASGDADNRSTPNERESSEL
QAPSADGSVTIEQFSEELRTISNRLHASQQLMPATGGFFVECFLGSINVR
FARKKERLSFKKEYEKLKLKLAPVFLIVTIICFFFEDYRWVHMMLQLALS
FYYTALAIRENILRVNGSNLRAWWIIHHYFTMFQGVLLLTWPNGASYAQY
RRMLHLYGMYNAILMIFQYRYQMARLYALRSLGMANEMDVASSDSTQIHW
SETMTLLLPLIVIGHFMQAFQAFYLFSLYRTFSNELQIMLLSALFLANFI
GNSITTAQVLFAKRAERKHTSRPRVPSSTPAQASSSNVAAKGDKAS*

mRNA from alignment at NODE_1910_length_7737_cov_4.855611:2640..3830+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2784.t1 ID=Gcaud2784.t1|Name=Gcaud2784.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1191bp|location=Sequence derived from alignment at NODE_1910_length_7737_cov_4.855611:2640..3830+ (Gracilaria caudata M_176_S67 male)
ATGGTTGTTACCGCAGGAAGTTCATCTTCCGCAAACACATTCGATGCATC
TACTTTGAATAACCTAAAGGCATCCCAAGATGATCTGGATCGTTTAGCTG
ATTCGCTGCAGTCCAGCATGAAAGAGCTTCATACTTTGCAGGATAATTTC
GAAACAGCCGTGAAGAAACAACAAAAGGCTCTCAAGGTTGCTTCTAAGAT
GTGCTCTTCAATGACATCTCGCCGAAGAAGACGTGGTCAGAATGCGAGTG
GCGATGCGGACAATCGGAGCACACCAAACGAACGAGAGTCATCTGAATTA
CAAGCACCTTCTGCAGATGGGTCGGTAACCATTGAGCAGTTTTCTGAAGA
GCTTCGTACCATTTCAAATCGATTGCATGCCAGTCAGCAGCTCATGCCTG
CAACTGGTGGGTTTTTTGTGGAGTGTTTCTTGGGTTCGATTAATGTTCGC
TTTGCTCGCAAGAAAGAACGACTTTCATTCAAGAAGGAGTACGAAAAGCT
CAAGTTGAAATTAGCGCCGGTGTTTCTCATCGTCACGATAATATGCTTCT
TTTTCGAAGACTACCGGTGGGTGCATATGATGCTTCAACTGGCGCTGTCG
TTCTACTACACCGCTCTCGCAATACGCGAAAACATCTTACGCGTCAATGG
TAGCAACCTGAGGGCGTGGTGGATCATTCACCACTATTTCACAATGTTTC
AGGGGGTTCTGCTGCTCACTTGGCCAAATGGGGCATCTTACGCGCAATAC
CGAAGAATGCTTCACCTCTACGGTATGTACAACGCTATTCTCATGATATT
CCAGTACAGATATCAAATGGCACGCCTCTATGCGCTCCGTTCGCTTGGTA
TGGCAAATGAAATGGATGTTGCGAGTTCGGACTCTACCCAAATTCACTGG
AGCGAAACCATGACCTTGTTGCTTCCTCTCATCGTCATCGGGCATTTCAT
GCAAGCCTTTCAGGCTTTTTATCTCTTCTCGCTTTATCGCACGTTCTCCA
ACGAGCTCCAAATTATGCTACTCAGTGCTCTATTTCTGGCTAATTTCATT
GGCAATTCCATTACCACAGCTCAAGTCTTGTTTGCCAAGCGTGCCGAGAG
GAAGCACACGTCTCGGCCACGAGTACCTTCGTCTACACCGGCACAGGCAT
CTTCATCGAATGTTGCTGCCAAAGGTGACAAGGCTTCATAG

Coding sequence (CDS) from alignment at NODE_1910_length_7737_cov_4.855611:2640..3830+

>Gcaud2784.t1 ID=Gcaud2784.t1|Name=Gcaud2784.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1191bp|location=Sequence derived from alignment at NODE_1910_length_7737_cov_4.855611:2640..3830+ (Gracilaria caudata M_176_S67 male)
ATGGTTGTTACCGCAGGAAGTTCATCTTCCGCAAACACATTCGATGCATC
TACTTTGAATAACCTAAAGGCATCCCAAGATGATCTGGATCGTTTAGCTG
ATTCGCTGCAGTCCAGCATGAAAGAGCTTCATACTTTGCAGGATAATTTC
GAAACAGCCGTGAAGAAACAACAAAAGGCTCTCAAGGTTGCTTCTAAGAT
GTGCTCTTCAATGACATCTCGCCGAAGAAGACGTGGTCAGAATGCGAGTG
GCGATGCGGACAATCGGAGCACACCAAACGAACGAGAGTCATCTGAATTA
CAAGCACCTTCTGCAGATGGGTCGGTAACCATTGAGCAGTTTTCTGAAGA
GCTTCGTACCATTTCAAATCGATTGCATGCCAGTCAGCAGCTCATGCCTG
CAACTGGTGGGTTTTTTGTGGAGTGTTTCTTGGGTTCGATTAATGTTCGC
TTTGCTCGCAAGAAAGAACGACTTTCATTCAAGAAGGAGTACGAAAAGCT
CAAGTTGAAATTAGCGCCGGTGTTTCTCATCGTCACGATAATATGCTTCT
TTTTCGAAGACTACCGGTGGGTGCATATGATGCTTCAACTGGCGCTGTCG
TTCTACTACACCGCTCTCGCAATACGCGAAAACATCTTACGCGTCAATGG
TAGCAACCTGAGGGCGTGGTGGATCATTCACCACTATTTCACAATGTTTC
AGGGGGTTCTGCTGCTCACTTGGCCAAATGGGGCATCTTACGCGCAATAC
CGAAGAATGCTTCACCTCTACGGTATGTACAACGCTATTCTCATGATATT
CCAGTACAGATATCAAATGGCACGCCTCTATGCGCTCCGTTCGCTTGGTA
TGGCAAATGAAATGGATGTTGCGAGTTCGGACTCTACCCAAATTCACTGG
AGCGAAACCATGACCTTGTTGCTTCCTCTCATCGTCATCGGGCATTTCAT
GCAAGCCTTTCAGGCTTTTTATCTCTTCTCGCTTTATCGCACGTTCTCCA
ACGAGCTCCAAATTATGCTACTCAGTGCTCTATTTCTGGCTAATTTCATT
GGCAATTCCATTACCACAGCTCAAGTCTTGTTTGCCAAGCGTGCCGAGAG
GAAGCACACGTCTCGGCCACGAGTACCTTCGTCTACACCGGCACAGGCAT
CTTCATCGAATGTTGCTGCCAAAGGTGACAAGGCTTCATAG