Gcaud2777.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2777.t1
Unique Name	Gcaud2777.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	423

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_267_length_32960_cov_4.559859	contig	NODE_267_length_32960_cov_4.559859:17841..19109 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1027273.GZ77_23800
PFAMs	Metallophos,RicinB_lectin_2
Max annot lvl	1236\|Gammaproteobacteria
Evalue	8.07e-59
EggNOG OGs	COG5555@1\|root,COG5555@2\|Bacteria,1NBMC@1224\|Proteobacteria,1SECC@1236\|Gammaproteobacteria
Description	Calcineurin-like phosphoesterase
COG category	N

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2777	Gcaud2777	Gracilaria caudata M_176_S67 male	gene	NODE_267_length_32960_cov_4.559859 17841..19109 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2777.t1.stop1	Gcaud2777.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_267_length_32960_cov_4.559859 17841..17843 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2777.t1.CDS1	Gcaud2777.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_267_length_32960_cov_4.559859 17841..19109 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2777.t1.exon1	Gcaud2777.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_267_length_32960_cov_4.559859 17841..19109 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2777.t1.start1	Gcaud2777.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_267_length_32960_cov_4.559859 19107..19109 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2777.t1	Gcaud2777.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_267_length_32960_cov_4.559859 17841..19109 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_267_length_32960_cov_4.559859:17841..19109-
coding sequence from alignment at NODE_267_length_32960_cov_4.559859:17841..19109-

mRNA sequence

>Gcaud2777.t1 ID=Gcaud2777.t1|Name=Gcaud2777.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=423bp
MRFVSCYFTAFLLLGAAFGGSFEVCVSPTQVLHNGKCFPPCQPGFEGEDE
TCLVRINDEVNDVANSSNYIRGNGVDLVPCSSESFSRSAVRTEIDEHSFS
MIILNDPQLVWWQDPSDGEQCNGDEVCKRRNAEQEALDQVRAMNAITDLQ
VWPGGSETISRPRGVIINGDLTQYFHPHEFDLFQKYYSMDGNGAHKDVLQ
YPLYVGLGNHDYENNVKDCWWWLEMQYLLRTTNGCAQKAVDYMKGMISCG
TSASFPANDVESYDSGSLAYSWNYNEYHFIQLHNYATYTRTESIEISSSM
SWLERDLKQAVAEDQKIIMNVHDLDDSMDESELHALLELLESANVLAIFC
GHIISENNVGYQGDFGSIPVFRGGHGGEKNRNRFLLVHFASEYLRVLVVT
SFGGIPHFERAGDDVYDRTIYF*

spliced messenger RNA

>Gcaud2777.t1 ID=Gcaud2777.t1|Name=Gcaud2777.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at NODE_267_length_32960_cov_4.559859:17841..19109- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGTTTGTTTCTTGTTATTTCACTGCTTTCCTGTTGCTAGGTGCTGC
ATTCGGCGGCTCTTTTGAGGTGTGTGTGAGCCCTACTCAGGTATTGCACA
ATGGAAAATGCTTTCCTCCATGTCAACCTGGATTTGAAGGCGAGGATGAG
ACATGTTTAGTCAGAATTAATGATGAAGTGAACGATGTAGCCAACAGTTC
GAATTACATTCGCGGCAATGGTGTGGACTTAGTGCCATGCTCTTCGGAAA
GTTTCAGTCGAAGTGCCGTACGCACAGAAATCGATGAACACTCTTTTTCG
ATGATTATTCTGAATGATCCCCAACTGGTCTGGTGGCAGGATCCCAGCGA
TGGAGAACAATGCAACGGAGACGAAGTATGCAAACGCAGAAATGCTGAAC
AAGAAGCATTGGATCAGGTGCGAGCGATGAACGCCATCACAGATCTACAG
GTTTGGCCTGGAGGGAGTGAGACCATAAGTCGTCCGAGGGGAGTGATCAT
CAATGGCGATCTGACGCAGTACTTCCATCCTCATGAATTTGACCTGTTTC
AGAAGTACTACTCGATGGACGGTAACGGCGCACACAAGGATGTATTGCAA
TATCCGTTGTATGTGGGTCTGGGTAACCATGATTATGAAAACAATGTGAA
GGACTGCTGGTGGTGGCTAGAAATGCAATACTTGCTGCGTACTACAAACG
GTTGCGCACAGAAAGCGGTGGACTACATGAAGGGTATGATCTCATGTGGT
ACTTCTGCTTCGTTTCCTGCAAATGATGTGGAGAGCTACGATTCCGGAAG
TTTAGCTTACTCATGGAACTACAATGAGTACCATTTTATCCAGTTACACA
ACTACGCAACATACACGCGCACTGAATCAATTGAGATTTCAAGTTCGATG
AGTTGGCTAGAACGGGATCTGAAGCAGGCAGTTGCTGAAGATCAAAAGAT
AATAATGAATGTTCACGACTTGGATGACAGCATGGATGAATCAGAACTTC
ATGCATTGTTAGAGCTGCTGGAGAGCGCGAACGTTTTGGCAATATTCTGT
GGACATATTATAAGTGAGAATAATGTTGGATACCAGGGTGATTTTGGTTC
CATTCCTGTGTTCCGAGGGGGTCATGGCGGAGAGAAAAATCGGAACAGGT
TTCTATTGGTACATTTTGCATCCGAGTACCTAAGGGTGTTGGTAGTTACT
AGCTTCGGAGGAATCCCACACTTCGAAAGAGCTGGCGACGATGTTTATGA
TAGGACCATATATTTCTAG

protein sequence of Gcaud2777.t1

>Gcaud2777.t1 ID=Gcaud2777.t1|Name=Gcaud2777.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=423bp
MRFVSCYFTAFLLLGAAFGGSFEVCVSPTQVLHNGKCFPPCQPGFEGEDE
TCLVRINDEVNDVANSSNYIRGNGVDLVPCSSESFSRSAVRTEIDEHSFS
MIILNDPQLVWWQDPSDGEQCNGDEVCKRRNAEQEALDQVRAMNAITDLQ
VWPGGSETISRPRGVIINGDLTQYFHPHEFDLFQKYYSMDGNGAHKDVLQ
YPLYVGLGNHDYENNVKDCWWWLEMQYLLRTTNGCAQKAVDYMKGMISCG
TSASFPANDVESYDSGSLAYSWNYNEYHFIQLHNYATYTRTESIEISSSM
SWLERDLKQAVAEDQKIIMNVHDLDDSMDESELHALLELLESANVLAIFC
GHIISENNVGYQGDFGSIPVFRGGHGGEKNRNRFLLVHFASEYLRVLVVT
SFGGIPHFERAGDDVYDRTIYF*

mRNA from alignment at NODE_267_length_32960_cov_4.559859:17841..19109-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2777.t1 ID=Gcaud2777.t1|Name=Gcaud2777.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at NODE_267_length_32960_cov_4.559859:17841..19109- (Gracilaria caudata M_176_S67 male)
ATGCGGTTTGTTTCTTGTTATTTCACTGCTTTCCTGTTGCTAGGTGCTGC
ATTCGGCGGCTCTTTTGAGGTGTGTGTGAGCCCTACTCAGGTATTGCACA
ATGGAAAATGCTTTCCTCCATGTCAACCTGGATTTGAAGGCGAGGATGAG
ACATGTTTAGTCAGAATTAATGATGAAGTGAACGATGTAGCCAACAGTTC
GAATTACATTCGCGGCAATGGTGTGGACTTAGTGCCATGCTCTTCGGAAA
GTTTCAGTCGAAGTGCCGTACGCACAGAAATCGATGAACACTCTTTTTCG
ATGATTATTCTGAATGATCCCCAACTGGTCTGGTGGCAGGATCCCAGCGA
TGGAGAACAATGCAACGGAGACGAAGTATGCAAACGCAGAAATGCTGAAC
AAGAAGCATTGGATCAGGTGCGAGCGATGAACGCCATCACAGATCTACAG
GTTTGGCCTGGAGGGAGTGAGACCATAAGTCGTCCGAGGGGAGTGATCAT
CAATGGCGATCTGACGCAGTACTTCCATCCTCATGAATTTGACCTGTTTC
AGAAGTACTACTCGATGGACGGTAACGGCGCACACAAGGATGTATTGCAA
TATCCGTTGTATGTGGGTCTGGGTAACCATGATTATGAAAACAATGTGAA
GGACTGCTGGTGGTGGCTAGAAATGCAATACTTGCTGCGTACTACAAACG
GTTGCGCACAGAAAGCGGTGGACTACATGAAGGGTATGATCTCATGTGGT
ACTTCTGCTTCGTTTCCTGCAAATGATGTGGAGAGCTACGATTCCGGAAG
TTTAGCTTACTCATGGAACTACAATGAGTACCATTTTATCCAGTTACACA
ACTACGCAACATACACGCGCACTGAATCAATTGAGATTTCAAGTTCGATG
AGTTGGCTAGAACGGGATCTGAAGCAGGCAGTTGCTGAAGATCAAAAGAT
AATAATGAATGTTCACGACTTGGATGACAGCATGGATGAATCAGAACTTC
ATGCATTGTTAGAGCTGCTGGAGAGCGCGAACGTTTTGGCAATATTCTGT
GGACATATTATAAGTGAGAATAATGTTGGATACCAGGGTGATTTTGGTTC
CATTCCTGTGTTCCGAGGGGGTCATGGCGGAGAGAAAAATCGGAACAGGT
TTCTATTGGTACATTTTGCATCCGAGTACCTAAGGGTGTTGGTAGTTACT
AGCTTCGGAGGAATCCCACACTTCGAAAGAGCTGGCGACGATGTTTATGA
TAGGACCATATATTTCTAG

Coding sequence (CDS) from alignment at NODE_267_length_32960_cov_4.559859:17841..19109-

>Gcaud2777.t1 ID=Gcaud2777.t1|Name=Gcaud2777.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1269bp|location=Sequence derived from alignment at NODE_267_length_32960_cov_4.559859:17841..19109- (Gracilaria caudata M_176_S67 male)
ATGCGGTTTGTTTCTTGTTATTTCACTGCTTTCCTGTTGCTAGGTGCTGC
ATTCGGCGGCTCTTTTGAGGTGTGTGTGAGCCCTACTCAGGTATTGCACA
ATGGAAAATGCTTTCCTCCATGTCAACCTGGATTTGAAGGCGAGGATGAG
ACATGTTTAGTCAGAATTAATGATGAAGTGAACGATGTAGCCAACAGTTC
GAATTACATTCGCGGCAATGGTGTGGACTTAGTGCCATGCTCTTCGGAAA
GTTTCAGTCGAAGTGCCGTACGCACAGAAATCGATGAACACTCTTTTTCG
ATGATTATTCTGAATGATCCCCAACTGGTCTGGTGGCAGGATCCCAGCGA
TGGAGAACAATGCAACGGAGACGAAGTATGCAAACGCAGAAATGCTGAAC
AAGAAGCATTGGATCAGGTGCGAGCGATGAACGCCATCACAGATCTACAG
GTTTGGCCTGGAGGGAGTGAGACCATAAGTCGTCCGAGGGGAGTGATCAT
CAATGGCGATCTGACGCAGTACTTCCATCCTCATGAATTTGACCTGTTTC
AGAAGTACTACTCGATGGACGGTAACGGCGCACACAAGGATGTATTGCAA
TATCCGTTGTATGTGGGTCTGGGTAACCATGATTATGAAAACAATGTGAA
GGACTGCTGGTGGTGGCTAGAAATGCAATACTTGCTGCGTACTACAAACG
GTTGCGCACAGAAAGCGGTGGACTACATGAAGGGTATGATCTCATGTGGT
ACTTCTGCTTCGTTTCCTGCAAATGATGTGGAGAGCTACGATTCCGGAAG
TTTAGCTTACTCATGGAACTACAATGAGTACCATTTTATCCAGTTACACA
ACTACGCAACATACACGCGCACTGAATCAATTGAGATTTCAAGTTCGATG
AGTTGGCTAGAACGGGATCTGAAGCAGGCAGTTGCTGAAGATCAAAAGAT
AATAATGAATGTTCACGACTTGGATGACAGCATGGATGAATCAGAACTTC
ATGCATTGTTAGAGCTGCTGGAGAGCGCGAACGTTTTGGCAATATTCTGT
GGACATATTATAAGTGAGAATAATGTTGGATACCAGGGTGATTTTGGTTC
CATTCCTGTGTTCCGAGGGGGTCATGGCGGAGAGAAAAATCGGAACAGGT
TTCTATTGGTACATTTTGCATCCGAGTACCTAAGGGTGTTGGTAGTTACT
AGCTTCGGAGGAATCCCACACTTCGAAAGAGCTGGCGACGATGTTTATGA
TAGGACCATATATTTCTAG