Gcaud2772.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2772.t1
Unique Name	Gcaud2772.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	532

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_267_length_32960_cov_4.559859	contig	NODE_267_length_32960_cov_4.559859:5729..7324 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	946362.XP_004997996.1
PFAMs	DUF72
Max annot lvl	33154\|Opisthokonta
Evalue	7.79e-42
EggNOG OGs	COG1801@1\|root,2S9RJ@2759\|Eukaryota,3ASFI@33154\|Opisthokonta
Description	Protein of unknown function DUF72
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2772	Gcaud2772	Gracilaria caudata M_176_S67 male	gene	NODE_267_length_32960_cov_4.559859 5729..7324 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2772.t1.start1	Gcaud2772.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_267_length_32960_cov_4.559859 5729..5731 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2772.t1.CDS1	Gcaud2772.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_267_length_32960_cov_4.559859 5729..7324 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2772.t1.exon1	Gcaud2772.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_267_length_32960_cov_4.559859 5729..7324 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2772.t1.stop1	Gcaud2772.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_267_length_32960_cov_4.559859 7322..7324 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2772.t1	Gcaud2772.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_267_length_32960_cov_4.559859 5729..7324 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_267_length_32960_cov_4.559859:5729..7324+
coding sequence from alignment at NODE_267_length_32960_cov_4.559859:5729..7324+

mRNA sequence

>Gcaud2772.t1 ID=Gcaud2772.t1|Name=Gcaud2772.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=532bp
MSIHIGTAGYVYPHWRKGAFYPRGLTQSQELTHYLRNFPTVEINATWHAF
PRRQTLQKWRALAPSNAIFALKVPKLITHQKRLRDVRQDILAFCSLAIDE
LQSNLGPLLFQCPPSLPYSFELLRDFIRDIEYVREQCPSASFKVALELRD
RTWFRPQVFQLLASNDIALVDNVVVFDHDSSLINHSSFPNARLLKDVPAA
PWRYVRFHGSKNPAVLTDFGHSILLPFAKRAGSDPNVSEFAFFLNDWGAF
APKNAVLYTQLVAKEKGLSVKKLCHGFLPLWCKKPTTIKSFFKSKPASNC
KVPSKGQNVKGCHMPPAENVRHSLLEPQALSVSQQIVTEKEAGQHSMEQS
VSKNAAVKTPETMDSLGLLEDGAHYLPPKPERTPYSRRDTVAAEMPQHEA
VDRDSNISKSQCTPLHNDTVKPSLPSCNIIERGSFTGAMIPEMPSDSDNS
VVAELESPPQPLVPITSQQGSFKMPGLKRSPELLSYPPRKSLGVSKNGLR
KSSTPKKKPKAKAARGFADIAIFFKPAPEER*

spliced messenger RNA

>Gcaud2772.t1 ID=Gcaud2772.t1|Name=Gcaud2772.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1596bp|location=Sequence derived from alignment at NODE_267_length_32960_cov_4.559859:5729..7324+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGATACACATAGGAACAGCCGGATACGTTTATCCTCACTGGCGAAA
GGGGGCATTTTATCCCAGGGGTCTTACTCAATCTCAAGAGCTCACGCACT
ATCTGAGAAACTTCCCCACGGTGGAGATAAACGCCACATGGCACGCCTTT
CCGCGCCGACAAACGCTTCAAAAATGGCGCGCCTTAGCTCCATCAAATGC
AATCTTCGCACTCAAAGTTCCCAAGCTCATCACGCACCAAAAGCGACTAC
GCGATGTCAGACAAGACATCCTTGCCTTCTGTTCACTAGCAATTGACGAG
CTGCAGTCCAACCTTGGGCCCCTTTTGTTTCAATGTCCACCGTCGCTTCC
GTATTCTTTCGAGCTCCTACGTGATTTCATTCGTGACATTGAGTACGTGC
GAGAGCAGTGTCCCTCCGCGTCGTTCAAAGTCGCTCTGGAGCTGCGTGAT
AGAACTTGGTTCCGTCCGCAAGTCTTCCAGCTACTGGCCTCTAATGACAT
TGCCCTAGTTGACAACGTCGTCGTGTTCGACCATGACTCCTCCTTGATTA
ACCACAGTTCCTTCCCAAACGCCCGTTTACTCAAAGATGTTCCTGCAGCA
CCATGGAGATATGTTCGATTTCATGGGTCGAAGAATCCAGCAGTGCTCAC
TGATTTCGGACATTCCATCCTCCTTCCGTTTGCCAAACGTGCCGGAAGCG
ATCCAAACGTCAGTGAGTTCGCATTCTTTTTGAATGACTGGGGTGCTTTC
GCTCCAAAGAACGCTGTCTTGTATACCCAGCTCGTTGCCAAAGAGAAAGG
TTTATCAGTTAAGAAATTGTGCCATGGCTTTCTGCCTCTCTGGTGCAAGA
AGCCCACTACCATCAAATCTTTTTTCAAGTCGAAACCTGCCAGCAATTGC
AAAGTGCCTTCCAAGGGGCAGAACGTGAAGGGGTGCCATATGCCTCCAGC
TGAAAACGTACGACATAGCTTGCTTGAACCTCAGGCGTTATCAGTCTCGC
AACAAATTGTCACAGAAAAGGAGGCGGGACAGCACAGCATGGAGCAGAGT
GTGTCGAAGAATGCAGCAGTAAAAACGCCTGAGACAATGGATTCTTTGGG
GTTACTCGAAGATGGAGCACATTACCTGCCTCCGAAACCTGAACGAACTC
CCTATTCTCGGCGAGATACCGTTGCGGCAGAGATGCCTCAACACGAAGCA
GTGGACAGAGATTCGAATATTTCTAAGAGTCAATGCACACCGTTACACAA
CGATACGGTGAAACCAAGTCTTCCATCTTGTAACATTATCGAACGTGGGA
GCTTTACAGGGGCAATGATTCCGGAAATGCCTTCTGACAGCGATAATAGC
GTAGTAGCTGAGCTCGAATCCCCACCTCAACCTCTCGTTCCCATCACATC
ACAGCAAGGCAGCTTCAAGATGCCTGGGTTAAAAAGATCACCAGAGTTGC
TTTCGTATCCACCGAGAAAGTCTCTAGGTGTTAGTAAAAATGGTTTGAGA
AAGTCTTCTACCCCGAAGAAAAAGCCAAAGGCGAAGGCCGCAAGAGGATT
TGCGGATATCGCGATCTTTTTCAAACCAGCTCCTGAGGAACGATGA

protein sequence of Gcaud2772.t1

>Gcaud2772.t1 ID=Gcaud2772.t1|Name=Gcaud2772.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=532bp
MSIHIGTAGYVYPHWRKGAFYPRGLTQSQELTHYLRNFPTVEINATWHAF
PRRQTLQKWRALAPSNAIFALKVPKLITHQKRLRDVRQDILAFCSLAIDE
LQSNLGPLLFQCPPSLPYSFELLRDFIRDIEYVREQCPSASFKVALELRD
RTWFRPQVFQLLASNDIALVDNVVVFDHDSSLINHSSFPNARLLKDVPAA
PWRYVRFHGSKNPAVLTDFGHSILLPFAKRAGSDPNVSEFAFFLNDWGAF
APKNAVLYTQLVAKEKGLSVKKLCHGFLPLWCKKPTTIKSFFKSKPASNC
KVPSKGQNVKGCHMPPAENVRHSLLEPQALSVSQQIVTEKEAGQHSMEQS
VSKNAAVKTPETMDSLGLLEDGAHYLPPKPERTPYSRRDTVAAEMPQHEA
VDRDSNISKSQCTPLHNDTVKPSLPSCNIIERGSFTGAMIPEMPSDSDNS
VVAELESPPQPLVPITSQQGSFKMPGLKRSPELLSYPPRKSLGVSKNGLR
KSSTPKKKPKAKAARGFADIAIFFKPAPEER*

mRNA from alignment at NODE_267_length_32960_cov_4.559859:5729..7324+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2772.t1 ID=Gcaud2772.t1|Name=Gcaud2772.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1596bp|location=Sequence derived from alignment at NODE_267_length_32960_cov_4.559859:5729..7324+ (Gracilaria caudata M_176_S67 male)
ATGTCGATACACATAGGAACAGCCGGATACGTTTATCCTCACTGGCGAAA
GGGGGCATTTTATCCCAGGGGTCTTACTCAATCTCAAGAGCTCACGCACT
ATCTGAGAAACTTCCCCACGGTGGAGATAAACGCCACATGGCACGCCTTT
CCGCGCCGACAAACGCTTCAAAAATGGCGCGCCTTAGCTCCATCAAATGC
AATCTTCGCACTCAAAGTTCCCAAGCTCATCACGCACCAAAAGCGACTAC
GCGATGTCAGACAAGACATCCTTGCCTTCTGTTCACTAGCAATTGACGAG
CTGCAGTCCAACCTTGGGCCCCTTTTGTTTCAATGTCCACCGTCGCTTCC
GTATTCTTTCGAGCTCCTACGTGATTTCATTCGTGACATTGAGTACGTGC
GAGAGCAGTGTCCCTCCGCGTCGTTCAAAGTCGCTCTGGAGCTGCGTGAT
AGAACTTGGTTCCGTCCGCAAGTCTTCCAGCTACTGGCCTCTAATGACAT
TGCCCTAGTTGACAACGTCGTCGTGTTCGACCATGACTCCTCCTTGATTA
ACCACAGTTCCTTCCCAAACGCCCGTTTACTCAAAGATGTTCCTGCAGCA
CCATGGAGATATGTTCGATTTCATGGGTCGAAGAATCCAGCAGTGCTCAC
TGATTTCGGACATTCCATCCTCCTTCCGTTTGCCAAACGTGCCGGAAGCG
ATCCAAACGTCAGTGAGTTCGCATTCTTTTTGAATGACTGGGGTGCTTTC
GCTCCAAAGAACGCTGTCTTGTATACCCAGCTCGTTGCCAAAGAGAAAGG
TTTATCAGTTAAGAAATTGTGCCATGGCTTTCTGCCTCTCTGGTGCAAGA
AGCCCACTACCATCAAATCTTTTTTCAAGTCGAAACCTGCCAGCAATTGC
AAAGTGCCTTCCAAGGGGCAGAACGTGAAGGGGTGCCATATGCCTCCAGC
TGAAAACGTACGACATAGCTTGCTTGAACCTCAGGCGTTATCAGTCTCGC
AACAAATTGTCACAGAAAAGGAGGCGGGACAGCACAGCATGGAGCAGAGT
GTGTCGAAGAATGCAGCAGTAAAAACGCCTGAGACAATGGATTCTTTGGG
GTTACTCGAAGATGGAGCACATTACCTGCCTCCGAAACCTGAACGAACTC
CCTATTCTCGGCGAGATACCGTTGCGGCAGAGATGCCTCAACACGAAGCA
GTGGACAGAGATTCGAATATTTCTAAGAGTCAATGCACACCGTTACACAA
CGATACGGTGAAACCAAGTCTTCCATCTTGTAACATTATCGAACGTGGGA
GCTTTACAGGGGCAATGATTCCGGAAATGCCTTCTGACAGCGATAATAGC
GTAGTAGCTGAGCTCGAATCCCCACCTCAACCTCTCGTTCCCATCACATC
ACAGCAAGGCAGCTTCAAGATGCCTGGGTTAAAAAGATCACCAGAGTTGC
TTTCGTATCCACCGAGAAAGTCTCTAGGTGTTAGTAAAAATGGTTTGAGA
AAGTCTTCTACCCCGAAGAAAAAGCCAAAGGCGAAGGCCGCAAGAGGATT
TGCGGATATCGCGATCTTTTTCAAACCAGCTCCTGAGGAACGATGA

Coding sequence (CDS) from alignment at NODE_267_length_32960_cov_4.559859:5729..7324+

>Gcaud2772.t1 ID=Gcaud2772.t1|Name=Gcaud2772.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1596bp|location=Sequence derived from alignment at NODE_267_length_32960_cov_4.559859:5729..7324+ (Gracilaria caudata M_176_S67 male)
ATGTCGATACACATAGGAACAGCCGGATACGTTTATCCTCACTGGCGAAA
GGGGGCATTTTATCCCAGGGGTCTTACTCAATCTCAAGAGCTCACGCACT
ATCTGAGAAACTTCCCCACGGTGGAGATAAACGCCACATGGCACGCCTTT
CCGCGCCGACAAACGCTTCAAAAATGGCGCGCCTTAGCTCCATCAAATGC
AATCTTCGCACTCAAAGTTCCCAAGCTCATCACGCACCAAAAGCGACTAC
GCGATGTCAGACAAGACATCCTTGCCTTCTGTTCACTAGCAATTGACGAG
CTGCAGTCCAACCTTGGGCCCCTTTTGTTTCAATGTCCACCGTCGCTTCC
GTATTCTTTCGAGCTCCTACGTGATTTCATTCGTGACATTGAGTACGTGC
GAGAGCAGTGTCCCTCCGCGTCGTTCAAAGTCGCTCTGGAGCTGCGTGAT
AGAACTTGGTTCCGTCCGCAAGTCTTCCAGCTACTGGCCTCTAATGACAT
TGCCCTAGTTGACAACGTCGTCGTGTTCGACCATGACTCCTCCTTGATTA
ACCACAGTTCCTTCCCAAACGCCCGTTTACTCAAAGATGTTCCTGCAGCA
CCATGGAGATATGTTCGATTTCATGGGTCGAAGAATCCAGCAGTGCTCAC
TGATTTCGGACATTCCATCCTCCTTCCGTTTGCCAAACGTGCCGGAAGCG
ATCCAAACGTCAGTGAGTTCGCATTCTTTTTGAATGACTGGGGTGCTTTC
GCTCCAAAGAACGCTGTCTTGTATACCCAGCTCGTTGCCAAAGAGAAAGG
TTTATCAGTTAAGAAATTGTGCCATGGCTTTCTGCCTCTCTGGTGCAAGA
AGCCCACTACCATCAAATCTTTTTTCAAGTCGAAACCTGCCAGCAATTGC
AAAGTGCCTTCCAAGGGGCAGAACGTGAAGGGGTGCCATATGCCTCCAGC
TGAAAACGTACGACATAGCTTGCTTGAACCTCAGGCGTTATCAGTCTCGC
AACAAATTGTCACAGAAAAGGAGGCGGGACAGCACAGCATGGAGCAGAGT
GTGTCGAAGAATGCAGCAGTAAAAACGCCTGAGACAATGGATTCTTTGGG
GTTACTCGAAGATGGAGCACATTACCTGCCTCCGAAACCTGAACGAACTC
CCTATTCTCGGCGAGATACCGTTGCGGCAGAGATGCCTCAACACGAAGCA
GTGGACAGAGATTCGAATATTTCTAAGAGTCAATGCACACCGTTACACAA
CGATACGGTGAAACCAAGTCTTCCATCTTGTAACATTATCGAACGTGGGA
GCTTTACAGGGGCAATGATTCCGGAAATGCCTTCTGACAGCGATAATAGC
GTAGTAGCTGAGCTCGAATCCCCACCTCAACCTCTCGTTCCCATCACATC
ACAGCAAGGCAGCTTCAAGATGCCTGGGTTAAAAAGATCACCAGAGTTGC
TTTCGTATCCACCGAGAAAGTCTCTAGGTGTTAGTAAAAATGGTTTGAGA
AAGTCTTCTACCCCGAAGAAAAAGCCAAAGGCGAAGGCCGCAAGAGGATT
TGCGGATATCGCGATCTTTTTCAAACCAGCTCCTGAGGAACGATGA