Gcaud2767.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2767.t1
Unique NameGcaud2767.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length293
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_979_length_15560_cov_4.680264contigNODE_979_length_15560_cov_4.680264:12220..13098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2711.XP_006469185.1
PFAMsPhyH
Max annot lvl35493|Streptophyta
KEGG koko:K00477
KEGG Pathwayko04146,map04146
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016705,GO:0016706,GO:0044464,GO:0048244,GO:0051213,GO:0055114,GO:0071944
Evalue6.35e-57
EggNOG OGsCOG5285@1|root,KOG3290@2759|Eukaryota,37PY8@33090|Viridiplantae,3GG3P@35493|Streptophyta
EC1.14.11.18
DescriptionPhytanoyl-CoA dioxygenase
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2767Gcaud2767Gracilaria caudata M_176_S67 malegeneNODE_979_length_15560_cov_4.680264 12220..13098 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2767.t1.start1Gcaud2767.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_979_length_15560_cov_4.680264 12220..12222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2767.t1.CDS1Gcaud2767.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_979_length_15560_cov_4.680264 12220..13098 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2767.t1.exon1Gcaud2767.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_979_length_15560_cov_4.680264 12220..13098 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2767.t1.stop1Gcaud2767.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_979_length_15560_cov_4.680264 13096..13098 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2767.t1Gcaud2767.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_979_length_15560_cov_4.680264 12220..13098 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2767.t1 ID=Gcaud2767.t1|Name=Gcaud2767.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=293bp
MDGYFCWTLTDDAHTLTEARNFFNENGYVVFTSHASQKQTAALRAEAQTI
MNAFYDKPQQASVFSTDEETQKRVVPGDYFLHSATKVRCFLEEKQPSQSG
NKPAINKIGHALHELHAPFNSFSRSPNTRRLAAAFGFEHSLLVQSMYILK
NAHVGGAVSAHRDATFVRASSDRAEDCFGLWWALEPSTLQNGCLWVVPGS
QGAGTPKRRMVVGDDGHTSVLGADEQYAETDFVALPMNEGDVVVIHGGVV
HRSLPNVSEKSRHAYSVHLVRGGMARDCWLRVGAGGQPFQAL*
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spliced messenger RNA

>Gcaud2767.t1 ID=Gcaud2767.t1|Name=Gcaud2767.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=879bp|location=Sequence derived from alignment at NODE_979_length_15560_cov_4.680264:12220..13098+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGGGTATTTCTGCTGGACGTTGACGGACGACGCCCACACTCTCAC
AGAGGCGCGCAACTTCTTCAACGAGAACGGCTACGTTGTGTTCACATCGC
ATGCCAGCCAGAAGCAAACCGCTGCACTGAGAGCCGAGGCGCAGACAATC
ATGAACGCCTTCTACGACAAGCCGCAACAAGCGTCCGTCTTCAGCACCGA
CGAGGAGACCCAGAAACGCGTGGTGCCAGGCGACTACTTCCTGCACTCCG
CCACCAAAGTGCGTTGCTTCCTCGAAGAAAAGCAGCCATCACAAAGCGGA
AACAAGCCAGCCATCAACAAGATCGGGCACGCATTACACGAACTGCACGC
GCCGTTCAACTCGTTCTCGCGTTCCCCGAACACGCGTCGTCTCGCCGCGG
CGTTCGGCTTCGAACACTCGCTTCTGGTGCAGAGCATGTACATCCTGAAG
AACGCGCACGTAGGCGGCGCCGTCAGCGCACATCGCGACGCGACGTTTGT
GCGCGCTTCATCCGACCGCGCCGAAGATTGCTTCGGTCTATGGTGGGCGC
TGGAGCCGTCGACGTTACAAAACGGCTGTCTGTGGGTCGTGCCCGGCAGT
CAGGGCGCCGGCACGCCGAAGCGTCGTATGGTAGTGGGCGACGACGGGCA
CACCAGCGTGCTCGGCGCAGACGAGCAGTATGCGGAGACAGACTTCGTGG
CACTGCCGATGAATGAAGGCGACGTCGTGGTGATCCACGGCGGCGTAGTG
CATCGCAGTCTACCGAACGTGAGCGAGAAGAGTCGCCATGCGTATTCCGT
TCACCTCGTTCGCGGCGGCATGGCTCGCGATTGTTGGCTCAGAGTGGGCG
CTGGCGGTCAGCCGTTCCAAGCGCTGTGA
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protein sequence of Gcaud2767.t1

>Gcaud2767.t1 ID=Gcaud2767.t1|Name=Gcaud2767.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=293bp
MDGYFCWTLTDDAHTLTEARNFFNENGYVVFTSHASQKQTAALRAEAQTI
MNAFYDKPQQASVFSTDEETQKRVVPGDYFLHSATKVRCFLEEKQPSQSG
NKPAINKIGHALHELHAPFNSFSRSPNTRRLAAAFGFEHSLLVQSMYILK
NAHVGGAVSAHRDATFVRASSDRAEDCFGLWWALEPSTLQNGCLWVVPGS
QGAGTPKRRMVVGDDGHTSVLGADEQYAETDFVALPMNEGDVVVIHGGVV
HRSLPNVSEKSRHAYSVHLVRGGMARDCWLRVGAGGQPFQAL*
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mRNA from alignment at NODE_979_length_15560_cov_4.680264:12220..13098+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2767.t1 ID=Gcaud2767.t1|Name=Gcaud2767.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=879bp|location=Sequence derived from alignment at NODE_979_length_15560_cov_4.680264:12220..13098+ (Gracilaria caudata M_176_S67 male)
ATGGACGGGTATTTCTGCTGGACGTTGACGGACGACGCCCACACTCTCAC
AGAGGCGCGCAACTTCTTCAACGAGAACGGCTACGTTGTGTTCACATCGC
ATGCCAGCCAGAAGCAAACCGCTGCACTGAGAGCCGAGGCGCAGACAATC
ATGAACGCCTTCTACGACAAGCCGCAACAAGCGTCCGTCTTCAGCACCGA
CGAGGAGACCCAGAAACGCGTGGTGCCAGGCGACTACTTCCTGCACTCCG
CCACCAAAGTGCGTTGCTTCCTCGAAGAAAAGCAGCCATCACAAAGCGGA
AACAAGCCAGCCATCAACAAGATCGGGCACGCATTACACGAACTGCACGC
GCCGTTCAACTCGTTCTCGCGTTCCCCGAACACGCGTCGTCTCGCCGCGG
CGTTCGGCTTCGAACACTCGCTTCTGGTGCAGAGCATGTACATCCTGAAG
AACGCGCACGTAGGCGGCGCCGTCAGCGCACATCGCGACGCGACGTTTGT
GCGCGCTTCATCCGACCGCGCCGAAGATTGCTTCGGTCTATGGTGGGCGC
TGGAGCCGTCGACGTTACAAAACGGCTGTCTGTGGGTCGTGCCCGGCAGT
CAGGGCGCCGGCACGCCGAAGCGTCGTATGGTAGTGGGCGACGACGGGCA
CACCAGCGTGCTCGGCGCAGACGAGCAGTATGCGGAGACAGACTTCGTGG
CACTGCCGATGAATGAAGGCGACGTCGTGGTGATCCACGGCGGCGTAGTG
CATCGCAGTCTACCGAACGTGAGCGAGAAGAGTCGCCATGCGTATTCCGT
TCACCTCGTTCGCGGCGGCATGGCTCGCGATTGTTGGCTCAGAGTGGGCG
CTGGCGGTCAGCCGTTCCAAGCGCTGTGA
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Coding sequence (CDS) from alignment at NODE_979_length_15560_cov_4.680264:12220..13098+

>Gcaud2767.t1 ID=Gcaud2767.t1|Name=Gcaud2767.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=879bp|location=Sequence derived from alignment at NODE_979_length_15560_cov_4.680264:12220..13098+ (Gracilaria caudata M_176_S67 male)
ATGGACGGGTATTTCTGCTGGACGTTGACGGACGACGCCCACACTCTCAC
AGAGGCGCGCAACTTCTTCAACGAGAACGGCTACGTTGTGTTCACATCGC
ATGCCAGCCAGAAGCAAACCGCTGCACTGAGAGCCGAGGCGCAGACAATC
ATGAACGCCTTCTACGACAAGCCGCAACAAGCGTCCGTCTTCAGCACCGA
CGAGGAGACCCAGAAACGCGTGGTGCCAGGCGACTACTTCCTGCACTCCG
CCACCAAAGTGCGTTGCTTCCTCGAAGAAAAGCAGCCATCACAAAGCGGA
AACAAGCCAGCCATCAACAAGATCGGGCACGCATTACACGAACTGCACGC
GCCGTTCAACTCGTTCTCGCGTTCCCCGAACACGCGTCGTCTCGCCGCGG
CGTTCGGCTTCGAACACTCGCTTCTGGTGCAGAGCATGTACATCCTGAAG
AACGCGCACGTAGGCGGCGCCGTCAGCGCACATCGCGACGCGACGTTTGT
GCGCGCTTCATCCGACCGCGCCGAAGATTGCTTCGGTCTATGGTGGGCGC
TGGAGCCGTCGACGTTACAAAACGGCTGTCTGTGGGTCGTGCCCGGCAGT
CAGGGCGCCGGCACGCCGAAGCGTCGTATGGTAGTGGGCGACGACGGGCA
CACCAGCGTGCTCGGCGCAGACGAGCAGTATGCGGAGACAGACTTCGTGG
CACTGCCGATGAATGAAGGCGACGTCGTGGTGATCCACGGCGGCGTAGTG
CATCGCAGTCTACCGAACGTGAGCGAGAAGAGTCGCCATGCGTATTCCGT
TCACCTCGTTCGCGGCGGCATGGCTCGCGATTGTTGGCTCAGAGTGGGCG
CTGGCGGTCAGCCGTTCCAAGCGCTGTGA
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