Gcaud2765.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2765.t1
Unique Name	Gcaud2765.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	381

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_979_length_15560_cov_4.680264	contig	NODE_979_length_15560_cov_4.680264:5857..7067 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	28583.AMAG_03858T0
Max annot lvl	33154\|Opisthokonta
Evalue	9.69e-11
EggNOG OGs	2E64A@1\|root,2SCVP@2759\|Eukaryota,3ABD2@33154\|Opisthokonta

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2765	Gcaud2765	Gracilaria caudata M_176_S67 male	gene	NODE_979_length_15560_cov_4.680264 5857..7067 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2765.t1	Gcaud2765.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_979_length_15560_cov_4.680264 5857..7067 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2765.t1.start1	Gcaud2765.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_979_length_15560_cov_4.680264 5857..5859 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2765.t1.CDS1	Gcaud2765.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_979_length_15560_cov_4.680264 5857..5955 +
Gcaud2765.t1.CDS2	Gcaud2765.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_979_length_15560_cov_4.680264 6024..7067 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2765.t1.exon1	Gcaud2765.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_979_length_15560_cov_4.680264 5857..5955 +
Gcaud2765.t1.exon2	Gcaud2765.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_979_length_15560_cov_4.680264 6024..7067 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2765.t1.intron1	Gcaud2765.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_979_length_15560_cov_4.680264 5956..6023 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2765.t1.stop1	Gcaud2765.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_979_length_15560_cov_4.680264 7065..7067 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_979_length_15560_cov_4.680264:5857..7067+
coding sequence from alignment at NODE_979_length_15560_cov_4.680264:5857..7067+

mRNA sequence

>Gcaud2765.t1 ID=Gcaud2765.t1|Name=Gcaud2765.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=381bp
MFILLRCVTFLFSVLQVALAHSTMTDPQSISPGTCRLGGEPQFGVLNCPG
PCDLQAVEGTYKYSNYGSPENPARVYKRGERTTIKYQRNNHGPGGFIRLT
LVTPDQIMDREAHKRNAFHYSCWGAQPVRAASNELEKDHFGFTFVGSDGE
QHSQPKGYYMADVTIPSCVPDGDYVMGWVWYGGTGGSITSNVPQQPVPWG
YFGDYWSCSFVRISGGIPLAPSCEPVFVNDMAQFSEEGCMSANDEPGVCP
SEPCKVDGTYQKPQPFKYGSKPEPLTPANFGGILDKSFETEATIATPSVS
NSALPESSFSDTSPSPVSVQDMILTPSTAPSPFVGIDMVDTYPDHSMEPA
YETFDAMPSVTEELTEEPGLPVEELKSEVR*

spliced messenger RNA

>Gcaud2765.t1 ID=Gcaud2765.t1|Name=Gcaud2765.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1143bp|location=Sequence derived from alignment at NODE_979_length_15560_cov_4.680264:5857..7067+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTATTCTTTTGAGATGTGTCACGTTTCTGTTTTCTGTTCTACAAGT
AGCTTTGGCTCATTCAACTATGACCGATCCACAATCCATTTCGCCTGGGA
CTTGCCGGCTTGGTGGTGAACCGCAGTTTGGAGTGCTCAATTGCCCTGGT
CCATGCGACCTCCAAGCAGTAGAGGGCACGTACAAGTACTCAAATTACGG
ATCTCCAGAGAACCCTGCGCGAGTGTATAAGCGGGGCGAACGAACAACTA
TCAAGTATCAAAGGAACAATCACGGTCCAGGCGGTTTCATCCGCCTCACA
CTCGTTACTCCAGACCAAATTATGGATCGAGAAGCTCACAAACGCAATGC
CTTTCATTACAGCTGCTGGGGCGCACAACCTGTGCGAGCAGCCTCCAACG
AACTCGAGAAGGACCATTTTGGCTTTACTTTCGTCGGCAGTGATGGAGAG
CAGCACAGCCAACCCAAGGGCTATTACATGGCTGATGTCACAATTCCCTC
ATGCGTCCCAGATGGTGACTATGTGATGGGCTGGGTCTGGTATGGCGGGA
CTGGTGGATCAATCACGAGCAATGTTCCCCAGCAACCAGTCCCGTGGGGA
TACTTTGGGGACTACTGGTCCTGTTCTTTCGTTCGGATCAGCGGTGGAAT
ACCGCTTGCCCCCTCGTGCGAGCCTGTTTTTGTGAACGATATGGCTCAAT
TCTCCGAGGAAGGATGCATGTCTGCAAATGATGAACCGGGGGTTTGTCCA
AGCGAGCCTTGCAAAGTAGACGGAACATACCAGAAACCTCAGCCTTTCAA
GTACGGATCAAAGCCAGAACCACTTACTCCAGCGAACTTTGGTGGGATTC
TTGATAAGAGCTTCGAAACTGAAGCAACCATCGCGACCCCCTCCGTTTCT
AACTCAGCTTTGCCAGAGTCTTCCTTCTCCGACACATCACCATCTCCTGT
ATCAGTTCAGGATATGATATTGACTCCCTCAACGGCTCCTTCCCCGTTTG
TCGGAATAGATATGGTTGATACATATCCAGATCATAGCATGGAACCCGCA
TATGAAACTTTTGACGCTATGCCGTCAGTGACTGAGGAGCTTACCGAAGA
GCCAGGACTGCCGGTGGAGGAACTCAAGAGCGAGGTAAGGTGA

protein sequence of Gcaud2765.t1

>Gcaud2765.t1 ID=Gcaud2765.t1|Name=Gcaud2765.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=381bp
MFILLRCVTFLFSVLQVALAHSTMTDPQSISPGTCRLGGEPQFGVLNCPG
PCDLQAVEGTYKYSNYGSPENPARVYKRGERTTIKYQRNNHGPGGFIRLT
LVTPDQIMDREAHKRNAFHYSCWGAQPVRAASNELEKDHFGFTFVGSDGE
QHSQPKGYYMADVTIPSCVPDGDYVMGWVWYGGTGGSITSNVPQQPVPWG
YFGDYWSCSFVRISGGIPLAPSCEPVFVNDMAQFSEEGCMSANDEPGVCP
SEPCKVDGTYQKPQPFKYGSKPEPLTPANFGGILDKSFETEATIATPSVS
NSALPESSFSDTSPSPVSVQDMILTPSTAPSPFVGIDMVDTYPDHSMEPA
YETFDAMPSVTEELTEEPGLPVEELKSEVR*

mRNA from alignment at NODE_979_length_15560_cov_4.680264:5857..7067+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2765.t1 ID=Gcaud2765.t1|Name=Gcaud2765.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1211bp|location=Sequence derived from alignment at NODE_979_length_15560_cov_4.680264:5857..7067+ (Gracilaria caudata M_176_S67 male)
ATGTTTATTCTTTTGAGATGTGTCACGTTTCTGTTTTCTGTTCTACAAGT
AGCTTTGGCTCATTCAACTATGACCGATCCACAATCCATTTCGCCTGGGG
TAAGCTTTTTCAACGTCGTTTTGGAGTAACTATCTACACATATCTAACAT
TTTTCGTATCTGCTCAGACTTGCCGGCTTGGTGGTGAACCGCAGTTTGGA
GTGCTCAATTGCCCTGGTCCATGCGACCTCCAAGCAGTAGAGGGCACGTA
CAAGTACTCAAATTACGGATCTCCAGAGAACCCTGCGCGAGTGTATAAGC
GGGGCGAACGAACAACTATCAAGTATCAAAGGAACAATCACGGTCCAGGC
GGTTTCATCCGCCTCACACTCGTTACTCCAGACCAAATTATGGATCGAGA
AGCTCACAAACGCAATGCCTTTCATTACAGCTGCTGGGGCGCACAACCTG
TGCGAGCAGCCTCCAACGAACTCGAGAAGGACCATTTTGGCTTTACTTTC
GTCGGCAGTGATGGAGAGCAGCACAGCCAACCCAAGGGCTATTACATGGC
TGATGTCACAATTCCCTCATGCGTCCCAGATGGTGACTATGTGATGGGCT
GGGTCTGGTATGGCGGGACTGGTGGATCAATCACGAGCAATGTTCCCCAG
CAACCAGTCCCGTGGGGATACTTTGGGGACTACTGGTCCTGTTCTTTCGT
TCGGATCAGCGGTGGAATACCGCTTGCCCCCTCGTGCGAGCCTGTTTTTG
TGAACGATATGGCTCAATTCTCCGAGGAAGGATGCATGTCTGCAAATGAT
GAACCGGGGGTTTGTCCAAGCGAGCCTTGCAAAGTAGACGGAACATACCA
GAAACCTCAGCCTTTCAAGTACGGATCAAAGCCAGAACCACTTACTCCAG
CGAACTTTGGTGGGATTCTTGATAAGAGCTTCGAAACTGAAGCAACCATC
GCGACCCCCTCCGTTTCTAACTCAGCTTTGCCAGAGTCTTCCTTCTCCGA
CACATCACCATCTCCTGTATCAGTTCAGGATATGATATTGACTCCCTCAA
CGGCTCCTTCCCCGTTTGTCGGAATAGATATGGTTGATACATATCCAGAT
CATAGCATGGAACCCGCATATGAAACTTTTGACGCTATGCCGTCAGTGAC
TGAGGAGCTTACCGAAGAGCCAGGACTGCCGGTGGAGGAACTCAAGAGCG
AGGTAAGGTGA

Coding sequence (CDS) from alignment at NODE_979_length_15560_cov_4.680264:5857..7067+

>Gcaud2765.t1 ID=Gcaud2765.t1|Name=Gcaud2765.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1143bp|location=Sequence derived from alignment at NODE_979_length_15560_cov_4.680264:5857..7067+ (Gracilaria caudata M_176_S67 male)
ATGTTTATTCTTTTGAGATGTGTCACGTTTCTGTTTTCTGTTCTACAAGT
AGCTTTGGCTCATTCAACTATGACCGATCCACAATCCATTTCGCCTGGGA
CTTGCCGGCTTGGTGGTGAACCGCAGTTTGGAGTGCTCAATTGCCCTGGT
CCATGCGACCTCCAAGCAGTAGAGGGCACGTACAAGTACTCAAATTACGG
ATCTCCAGAGAACCCTGCGCGAGTGTATAAGCGGGGCGAACGAACAACTA
TCAAGTATCAAAGGAACAATCACGGTCCAGGCGGTTTCATCCGCCTCACA
CTCGTTACTCCAGACCAAATTATGGATCGAGAAGCTCACAAACGCAATGC
CTTTCATTACAGCTGCTGGGGCGCACAACCTGTGCGAGCAGCCTCCAACG
AACTCGAGAAGGACCATTTTGGCTTTACTTTCGTCGGCAGTGATGGAGAG
CAGCACAGCCAACCCAAGGGCTATTACATGGCTGATGTCACAATTCCCTC
ATGCGTCCCAGATGGTGACTATGTGATGGGCTGGGTCTGGTATGGCGGGA
CTGGTGGATCAATCACGAGCAATGTTCCCCAGCAACCAGTCCCGTGGGGA
TACTTTGGGGACTACTGGTCCTGTTCTTTCGTTCGGATCAGCGGTGGAAT
ACCGCTTGCCCCCTCGTGCGAGCCTGTTTTTGTGAACGATATGGCTCAAT
TCTCCGAGGAAGGATGCATGTCTGCAAATGATGAACCGGGGGTTTGTCCA
AGCGAGCCTTGCAAAGTAGACGGAACATACCAGAAACCTCAGCCTTTCAA
GTACGGATCAAAGCCAGAACCACTTACTCCAGCGAACTTTGGTGGGATTC
TTGATAAGAGCTTCGAAACTGAAGCAACCATCGCGACCCCCTCCGTTTCT
AACTCAGCTTTGCCAGAGTCTTCCTTCTCCGACACATCACCATCTCCTGT
ATCAGTTCAGGATATGATATTGACTCCCTCAACGGCTCCTTCCCCGTTTG
TCGGAATAGATATGGTTGATACATATCCAGATCATAGCATGGAACCCGCA
TATGAAACTTTTGACGCTATGCCGTCAGTGACTGAGGAGCTTACCGAAGA
GCCAGGACTGCCGGTGGAGGAACTCAAGAGCGAGGTAAGGTGA