Gcaud2760.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2760.t1
Unique Name	Gcaud2760.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	389

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1879_length_7911_cov_4.143223	contig	NODE_1879_length_7911_cov_4.143223:3235..4401 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	78898.MVEG_04553T0
Max annot lvl	4751\|Fungi
Evalue	1.92e-09
EggNOG OGs	2E3H1@1\|root,2SAJC@2759\|Eukaryota,3ARBF@33154\|Opisthokonta,3PFVF@4751\|Fungi
Description	Allomyces macrogynus ATCC 38327
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2760	Gcaud2760	Gracilaria caudata M_176_S67 male	gene	NODE_1879_length_7911_cov_4.143223 3235..4401 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2760.t1.start1	Gcaud2760.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1879_length_7911_cov_4.143223 3235..3237 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2760.t1.CDS1	Gcaud2760.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1879_length_7911_cov_4.143223 3235..4401 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2760.t1.exon1	Gcaud2760.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1879_length_7911_cov_4.143223 3235..4401 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2760.t1.stop1	Gcaud2760.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1879_length_7911_cov_4.143223 4399..4401 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2760.t1	Gcaud2760.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1879_length_7911_cov_4.143223 3235..4401 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1879_length_7911_cov_4.143223:3235..4401+
coding sequence from alignment at NODE_1879_length_7911_cov_4.143223:3235..4401+

mRNA sequence

>Gcaud2760.t1 ID=Gcaud2760.t1|Name=Gcaud2760.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=389bp
MLVSISVLLLFVAFAIQPSTPHAHQAIAYPWPISNDGACRLGHFKNCPGP
CPTGDLRLDQTPDAPSLTLRRGQSLEVHVKRNNHAGGFTRWTLVNVRHMY
DKKQHEQGAFYYTCGDQHVTHCTSKNRLRDCTYDGRNQYYRHELSVPKIY
ADGVYVLGFAWYGGTQAHGQGGTFGDYYDCMYVQIKGGPFEKWHQPTFDM
GSSATGTKGLCRSRTTWLGDCKKEPCTHRKSGLRVPYEFANGDAPKRLHH
SQFNKPYRMKRAGKNAPTLNGISIRDADGGKKVYASSKWAAVAKISLRKH
RKITATCDVWGAGVRHVIFYRNGIPVWKESRAPYGIAGLYKTRVKGRTVW
KLHSWKVGYGNDFYSLSCVVYGKDGSIQYAKMDVEQSI*

spliced messenger RNA

>Gcaud2760.t1 ID=Gcaud2760.t1|Name=Gcaud2760.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at NODE_1879_length_7911_cov_4.143223:3235..4401+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAGTTTCAATCAGTGTGTTGCTTTTGTTCGTGGCGTTCGCCATACA
ACCGAGCACACCGCACGCGCATCAGGCAATTGCTTACCCATGGCCCATCT
CCAATGACGGCGCGTGTCGTCTAGGACACTTCAAAAACTGCCCTGGACCG
TGTCCCACCGGCGATCTTCGTCTCGACCAAACCCCCGACGCCCCCTCCCT
CACCCTACGCAGAGGTCAATCACTCGAAGTTCACGTCAAACGCAACAACC
ACGCGGGCGGATTTACGCGCTGGACGCTGGTGAATGTGCGCCACATGTAC
GACAAGAAGCAACATGAACAGGGCGCGTTCTACTACACGTGCGGCGATCA
GCACGTCACGCACTGTACCTCCAAGAACCGCCTGCGCGACTGCACGTACG
ACGGTCGAAACCAGTACTACCGGCACGAGCTTTCGGTGCCCAAGATCTAC
GCGGACGGCGTGTATGTACTGGGTTTTGCGTGGTACGGCGGCACGCAGGC
GCACGGGCAAGGCGGCACGTTTGGCGATTACTACGATTGCATGTACGTGC
AGATCAAGGGGGGGCCTTTTGAAAAGTGGCATCAACCCACGTTCGACATG
GGCTCGTCCGCCACGGGTACAAAGGGGTTATGTCGATCGCGAACGACGTG
GCTTGGCGATTGTAAGAAGGAGCCGTGTACGCACCGCAAAAGCGGGCTTC
GTGTACCGTACGAATTTGCCAACGGCGATGCGCCGAAGCGATTGCATCAC
AGCCAGTTTAACAAACCGTACCGCATGAAACGCGCAGGGAAAAACGCGCC
CACGCTGAACGGCATCTCCATTCGCGACGCGGACGGTGGCAAGAAGGTGT
ACGCCAGTTCGAAGTGGGCGGCGGTGGCGAAGATTTCGCTGCGAAAGCAT
CGCAAGATCACGGCCACTTGCGATGTGTGGGGTGCGGGCGTGCGACACGT
GATTTTTTACCGCAACGGCATTCCGGTGTGGAAGGAAAGTCGCGCGCCGT
ATGGGATTGCGGGCTTGTACAAGACGCGCGTGAAGGGGAGGACGGTGTGG
AAGTTGCATTCGTGGAAAGTGGGGTATGGCAATGACTTTTACTCGCTTTC
TTGTGTGGTTTACGGCAAGGACGGCAGCATTCAGTATGCAAAGATGGATG
TAGAACAGAGCATATGA

protein sequence of Gcaud2760.t1

>Gcaud2760.t1 ID=Gcaud2760.t1|Name=Gcaud2760.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=389bp
MLVSISVLLLFVAFAIQPSTPHAHQAIAYPWPISNDGACRLGHFKNCPGP
CPTGDLRLDQTPDAPSLTLRRGQSLEVHVKRNNHAGGFTRWTLVNVRHMY
DKKQHEQGAFYYTCGDQHVTHCTSKNRLRDCTYDGRNQYYRHELSVPKIY
ADGVYVLGFAWYGGTQAHGQGGTFGDYYDCMYVQIKGGPFEKWHQPTFDM
GSSATGTKGLCRSRTTWLGDCKKEPCTHRKSGLRVPYEFANGDAPKRLHH
SQFNKPYRMKRAGKNAPTLNGISIRDADGGKKVYASSKWAAVAKISLRKH
RKITATCDVWGAGVRHVIFYRNGIPVWKESRAPYGIAGLYKTRVKGRTVW
KLHSWKVGYGNDFYSLSCVVYGKDGSIQYAKMDVEQSI*

mRNA from alignment at NODE_1879_length_7911_cov_4.143223:3235..4401+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2760.t1 ID=Gcaud2760.t1|Name=Gcaud2760.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at NODE_1879_length_7911_cov_4.143223:3235..4401+ (Gracilaria caudata M_176_S67 male)
ATGCTAGTTTCAATCAGTGTGTTGCTTTTGTTCGTGGCGTTCGCCATACA
ACCGAGCACACCGCACGCGCATCAGGCAATTGCTTACCCATGGCCCATCT
CCAATGACGGCGCGTGTCGTCTAGGACACTTCAAAAACTGCCCTGGACCG
TGTCCCACCGGCGATCTTCGTCTCGACCAAACCCCCGACGCCCCCTCCCT
CACCCTACGCAGAGGTCAATCACTCGAAGTTCACGTCAAACGCAACAACC
ACGCGGGCGGATTTACGCGCTGGACGCTGGTGAATGTGCGCCACATGTAC
GACAAGAAGCAACATGAACAGGGCGCGTTCTACTACACGTGCGGCGATCA
GCACGTCACGCACTGTACCTCCAAGAACCGCCTGCGCGACTGCACGTACG
ACGGTCGAAACCAGTACTACCGGCACGAGCTTTCGGTGCCCAAGATCTAC
GCGGACGGCGTGTATGTACTGGGTTTTGCGTGGTACGGCGGCACGCAGGC
GCACGGGCAAGGCGGCACGTTTGGCGATTACTACGATTGCATGTACGTGC
AGATCAAGGGGGGGCCTTTTGAAAAGTGGCATCAACCCACGTTCGACATG
GGCTCGTCCGCCACGGGTACAAAGGGGTTATGTCGATCGCGAACGACGTG
GCTTGGCGATTGTAAGAAGGAGCCGTGTACGCACCGCAAAAGCGGGCTTC
GTGTACCGTACGAATTTGCCAACGGCGATGCGCCGAAGCGATTGCATCAC
AGCCAGTTTAACAAACCGTACCGCATGAAACGCGCAGGGAAAAACGCGCC
CACGCTGAACGGCATCTCCATTCGCGACGCGGACGGTGGCAAGAAGGTGT
ACGCCAGTTCGAAGTGGGCGGCGGTGGCGAAGATTTCGCTGCGAAAGCAT
CGCAAGATCACGGCCACTTGCGATGTGTGGGGTGCGGGCGTGCGACACGT
GATTTTTTACCGCAACGGCATTCCGGTGTGGAAGGAAAGTCGCGCGCCGT
ATGGGATTGCGGGCTTGTACAAGACGCGCGTGAAGGGGAGGACGGTGTGG
AAGTTGCATTCGTGGAAAGTGGGGTATGGCAATGACTTTTACTCGCTTTC
TTGTGTGGTTTACGGCAAGGACGGCAGCATTCAGTATGCAAAGATGGATG
TAGAACAGAGCATATGA

Coding sequence (CDS) from alignment at NODE_1879_length_7911_cov_4.143223:3235..4401+

>Gcaud2760.t1 ID=Gcaud2760.t1|Name=Gcaud2760.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1167bp|location=Sequence derived from alignment at NODE_1879_length_7911_cov_4.143223:3235..4401+ (Gracilaria caudata M_176_S67 male)
ATGCTAGTTTCAATCAGTGTGTTGCTTTTGTTCGTGGCGTTCGCCATACA
ACCGAGCACACCGCACGCGCATCAGGCAATTGCTTACCCATGGCCCATCT
CCAATGACGGCGCGTGTCGTCTAGGACACTTCAAAAACTGCCCTGGACCG
TGTCCCACCGGCGATCTTCGTCTCGACCAAACCCCCGACGCCCCCTCCCT
CACCCTACGCAGAGGTCAATCACTCGAAGTTCACGTCAAACGCAACAACC
ACGCGGGCGGATTTACGCGCTGGACGCTGGTGAATGTGCGCCACATGTAC
GACAAGAAGCAACATGAACAGGGCGCGTTCTACTACACGTGCGGCGATCA
GCACGTCACGCACTGTACCTCCAAGAACCGCCTGCGCGACTGCACGTACG
ACGGTCGAAACCAGTACTACCGGCACGAGCTTTCGGTGCCCAAGATCTAC
GCGGACGGCGTGTATGTACTGGGTTTTGCGTGGTACGGCGGCACGCAGGC
GCACGGGCAAGGCGGCACGTTTGGCGATTACTACGATTGCATGTACGTGC
AGATCAAGGGGGGGCCTTTTGAAAAGTGGCATCAACCCACGTTCGACATG
GGCTCGTCCGCCACGGGTACAAAGGGGTTATGTCGATCGCGAACGACGTG
GCTTGGCGATTGTAAGAAGGAGCCGTGTACGCACCGCAAAAGCGGGCTTC
GTGTACCGTACGAATTTGCCAACGGCGATGCGCCGAAGCGATTGCATCAC
AGCCAGTTTAACAAACCGTACCGCATGAAACGCGCAGGGAAAAACGCGCC
CACGCTGAACGGCATCTCCATTCGCGACGCGGACGGTGGCAAGAAGGTGT
ACGCCAGTTCGAAGTGGGCGGCGGTGGCGAAGATTTCGCTGCGAAAGCAT
CGCAAGATCACGGCCACTTGCGATGTGTGGGGTGCGGGCGTGCGACACGT
GATTTTTTACCGCAACGGCATTCCGGTGTGGAAGGAAAGTCGCGCGCCGT
ATGGGATTGCGGGCTTGTACAAGACGCGCGTGAAGGGGAGGACGGTGTGG
AAGTTGCATTCGTGGAAAGTGGGGTATGGCAATGACTTTTACTCGCTTTC
TTGTGTGGTTTACGGCAAGGACGGCAGCATTCAGTATGCAAAGATGGATG
TAGAACAGAGCATATGA