Gcaud2754.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2754.t1
Unique NameGcaud2754.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length767
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_954_length_15765_cov_4.409787contigNODE_954_length_15765_cov_4.409787:2..2680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705170.1
PFAMsAAA_5,VWA,zf-RVT
Max annot lvl2759|Eukaryota
KEGG koko:K14572
KEGG Pathwayko03008,map03008
Evalue1.83e-45
EggNOG OGsCOG5271@1|root,KOG1808@2759|Eukaryota
DescriptionNuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits
COG categoryM
BRITEko00000,ko00001,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2754Gcaud2754Gracilaria caudata M_176_S67 malegeneNODE_954_length_15765_cov_4.409787 2..2680 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2754.t1Gcaud2754.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_954_length_15765_cov_4.409787 2..2680 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2754.t1.CDS1Gcaud2754.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_954_length_15765_cov_4.409787 2..313 -
Gcaud2754.t1.CDS2Gcaud2754.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_954_length_15765_cov_4.409787 692..2680 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2754.t1.exon1Gcaud2754.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_954_length_15765_cov_4.409787 2..313 -
Gcaud2754.t1.exon2Gcaud2754.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_954_length_15765_cov_4.409787 692..2680 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2754.t1.intron1Gcaud2754.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_954_length_15765_cov_4.409787 314..691 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2754.t1.start1Gcaud2754.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_954_length_15765_cov_4.409787 2678..2680 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2754.t1 ID=Gcaud2754.t1|Name=Gcaud2754.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=767bp
MEIDTPEPRHERSPRSRALEVFGEVIPDVFHFSSEPTTSSLAKAFSRPEL
TPLHVYRAASHLPERVLREVVQILTYEPGNVAATAARLLSIMRGLPGNLE
LALLFLQQHVQDFNNFDLRTVTFFAFICGPLLQNMCDWGRTIQRAADNNC
PESKLALSCLYDIKVHEAMEPITHLCEWESEHEHANAPSFWRELRWASFT
RSLVSSSVPSMFRSLQNVDNDVIAALPNSYGNAAPHYVRICKNLLPRRSI
TKDFSKPDEGMEIESKADIHETLPADRMVITQSIRQAIEDISDYLACGVS
FILEGPTGCGKSTILSYLAREVLYIGTKPSDYFKVPGVTFIQMDNAMISS
DGDSFTSLVGEIVPLPDGGGFTWRPGPIGLAARNGDWLVFENISRGDQST
SSALPVLLQLAKAKPGDTLDAPGRGEPIRIAKGFRCIATRSTPESDADDS
WEPPGGWSTWKRVHMQGLSSIEKVDVLKMRFASIQDCVERVVAAVEETAR
SVESIRGTLMRRPTMREAIRICRRLEETRNSFKALSVEQAVKDSYDVLGS
SSHVHSEQEHILGILAKSWSLGPETVRDLCLKHRPIVLSDQSKLSIGRAS
YQLKRNRPQPFRPKLAINGHTSRLLEIALRSLQMQEHVLLVGEAGSGKTS
VVQELASLLDQELQEEHDEPPRKRPRSSSAYGGNTEHRLSTAKSSARNEK
KKLGFAFSEGVLAKAMREGKWILLDEINLAPPELLERLVSVIDRGEVLLG
NENGDVVSQAPGFFLFG
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spliced messenger RNA

>Gcaud2754.t1 ID=Gcaud2754.t1|Name=Gcaud2754.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2301bp|location=Sequence derived from alignment at NODE_954_length_15765_cov_4.409787:2..2680- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAATTGACACGCCTGAACCTCGACATGAGCGTTCTCCTCGTTCCAG
AGCATTAGAAGTTTTTGGGGAGGTCATTCCAGATGTATTTCACTTCTCAT
CGGAACCTACCACCTCTTCGCTGGCAAAGGCATTTTCCCGCCCTGAATTA
ACTCCATTACATGTGTATCGTGCCGCATCTCATCTTCCGGAGCGCGTTCT
GCGCGAAGTTGTTCAAATTCTAACTTACGAACCGGGCAATGTCGCAGCAA
CCGCAGCGAGATTGTTGTCAATCATGAGAGGTCTTCCGGGAAACCTTGAA
CTAGCACTTCTGTTTCTTCAACAACACGTTCAGGACTTTAACAACTTTGA
TTTAAGAACAGTTACTTTTTTTGCGTTTATATGCGGTCCACTGCTTCAAA
ACATGTGTGACTGGGGCCGAACCATACAAAGAGCGGCTGATAACAACTGT
CCAGAATCTAAACTTGCGCTTTCCTGCCTGTATGATATCAAAGTCCATGA
GGCCATGGAGCCAATCACACATCTTTGCGAATGGGAGTCTGAGCACGAAC
ATGCAAACGCACCATCCTTCTGGCGTGAACTGCGATGGGCCTCATTCACA
CGGTCCCTTGTGAGCTCTAGCGTTCCCTCTATGTTTAGGTCATTGCAGAA
TGTTGACAATGACGTAATTGCAGCCCTACCGAATTCATACGGAAATGCCG
CTCCTCATTATGTGCGAATATGCAAGAACTTGCTTCCACGAAGGTCTATC
ACGAAGGATTTTTCGAAACCTGATGAGGGTATGGAAATCGAGTCTAAAGC
TGATATTCATGAGACGTTACCCGCTGACAGAATGGTCATCACGCAGTCCA
TACGGCAGGCAATAGAAGATATTTCCGACTATCTGGCTTGTGGCGTTTCA
TTTATACTAGAAGGTCCAACGGGGTGTGGGAAGAGTACGATTCTGTCCTA
TCTTGCTAGGGAAGTTTTGTATATTGGAACAAAACCCTCGGATTACTTCA
AGGTTCCTGGTGTGACGTTCATACAGATGGATAACGCAATGATATCTTCA
GATGGCGATTCGTTCACCTCCCTTGTGGGTGAAATTGTACCCTTACCAGA
TGGGGGCGGATTCACATGGCGACCAGGACCTATTGGTCTCGCAGCTCGAA
ATGGGGACTGGCTCGTATTTGAAAACATCAGCCGCGGGGACCAAAGCACC
TCATCTGCTCTTCCCGTTCTCTTGCAGCTTGCAAAAGCGAAACCAGGTGA
TACATTAGATGCCCCTGGACGGGGAGAACCGATCCGAATAGCGAAGGGAT
TTCGCTGTATTGCAACACGAAGCACACCTGAAAGCGATGCGGACGACTCT
TGGGAGCCTCCCGGAGGATGGAGCACATGGAAGCGGGTGCACATGCAAGG
GCTTTCAAGTATTGAGAAAGTAGACGTTTTGAAGATGCGGTTTGCGTCTA
TTCAAGACTGCGTAGAGCGAGTTGTGGCAGCAGTTGAAGAGACAGCTCGG
TCTGTTGAAAGCATTAGAGGTACGCTTATGAGACGGCCAACTATGCGAGA
AGCGATCCGTATCTGTCGTCGCCTGGAAGAAACAAGAAACTCGTTTAAGG
CGTTATCTGTCGAACAAGCCGTGAAAGACTCATACGACGTTCTTGGATCA
AGTTCTCACGTTCATTCTGAGCAAGAGCATATTTTGGGCATTCTAGCAAA
GTCGTGGTCGCTGGGCCCTGAAACTGTGCGGGATCTGTGCCTCAAACACC
GACCCATTGTTTTGAGCGATCAGAGCAAACTCAGTATTGGAAGAGCATCA
TATCAGCTGAAAAGAAATAGACCTCAACCCTTCCGTCCAAAGTTGGCAAT
TAACGGTCATACGTCAAGATTGCTTGAAATTGCGCTGAGGTCTTTACAAA
TGCAAGAACATGTGTTGCTCGTTGGGGAGGCCGGATCAGGAAAGACATCT
GTCGTGCAAGAACTAGCCTCTCTTCTAGACCAGGAGCTACAAGAAGAACA
TGATGAGCCTCCTCGCAAAAGACCTCGTTCGTCATCAGCGTACGGAGGAA
ATACGGAACATCGGCTCTCGACAGCGAAGTCTTCTGCCAGAAATGAAAAG
AAGAAGCTTGGATTCGCCTTTTCAGAAGGAGTCCTCGCGAAAGCCATGCG
GGAAGGAAAATGGATTCTATTAGATGAAATAAACCTTGCCCCACCGGAAC
TTCTTGAGAGGCTCGTTAGCGTTATTGATAGAGGAGAAGTGCTGCTTGGA
AATGAAAATGGTGATGTAGTCTCCCAAGCTCCTGGATTTTTCCTTTTCGG
T
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protein sequence of Gcaud2754.t1

>Gcaud2754.t1 ID=Gcaud2754.t1|Name=Gcaud2754.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=767bp
MEIDTPEPRHERSPRSRALEVFGEVIPDVFHFSSEPTTSSLAKAFSRPEL
TPLHVYRAASHLPERVLREVVQILTYEPGNVAATAARLLSIMRGLPGNLE
LALLFLQQHVQDFNNFDLRTVTFFAFICGPLLQNMCDWGRTIQRAADNNC
PESKLALSCLYDIKVHEAMEPITHLCEWESEHEHANAPSFWRELRWASFT
RSLVSSSVPSMFRSLQNVDNDVIAALPNSYGNAAPHYVRICKNLLPRRSI
TKDFSKPDEGMEIESKADIHETLPADRMVITQSIRQAIEDISDYLACGVS
FILEGPTGCGKSTILSYLAREVLYIGTKPSDYFKVPGVTFIQMDNAMISS
DGDSFTSLVGEIVPLPDGGGFTWRPGPIGLAARNGDWLVFENISRGDQST
SSALPVLLQLAKAKPGDTLDAPGRGEPIRIAKGFRCIATRSTPESDADDS
WEPPGGWSTWKRVHMQGLSSIEKVDVLKMRFASIQDCVERVVAAVEETAR
SVESIRGTLMRRPTMREAIRICRRLEETRNSFKALSVEQAVKDSYDVLGS
SSHVHSEQEHILGILAKSWSLGPETVRDLCLKHRPIVLSDQSKLSIGRAS
YQLKRNRPQPFRPKLAINGHTSRLLEIALRSLQMQEHVLLVGEAGSGKTS
VVQELASLLDQELQEEHDEPPRKRPRSSSAYGGNTEHRLSTAKSSARNEK
KKLGFAFSEGVLAKAMREGKWILLDEINLAPPELLERLVSVIDRGEVLLG
NENGDVVSQAPGFFLFG
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mRNA from alignment at NODE_954_length_15765_cov_4.409787:2..2680-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2754.t1 ID=Gcaud2754.t1|Name=Gcaud2754.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2679bp|location=Sequence derived from alignment at NODE_954_length_15765_cov_4.409787:2..2680- (Gracilaria caudata M_176_S67 male)
ATGGAAATTGACACGCCTGAACCTCGACATGAGCGTTCTCCTCGTTCCAG AGCATTAGAAGTTTTTGGGGAGGTCATTCCAGATGTATTTCACTTCTCAT CGGAACCTACCACCTCTTCGCTGGCAAAGGCATTTTCCCGCCCTGAATTA ACTCCATTACATGTGTATCGTGCCGCATCTCATCTTCCGGAGCGCGTTCT GCGCGAAGTTGTTCAAATTCTAACTTACGAACCGGGCAATGTCGCAGCAA CCGCAGCGAGATTGTTGTCAATCATGAGAGGTCTTCCGGGAAACCTTGAA CTAGCACTTCTGTTTCTTCAACAACACGTTCAGGACTTTAACAACTTTGA TTTAAGAACAGTTACTTTTTTTGCGTTTATATGCGGTCCACTGCTTCAAA ACATGTGTGACTGGGGCCGAACCATACAAAGAGCGGCTGATAACAACTGT CCAGAATCTAAACTTGCGCTTTCCTGCCTGTATGATATCAAAGTCCATGA GGCCATGGAGCCAATCACACATCTTTGCGAATGGGAGTCTGAGCACGAAC ATGCAAACGCACCATCCTTCTGGCGTGAACTGCGATGGGCCTCATTCACA CGGTCCCTTGTGAGCTCTAGCGTTCCCTCTATGTTTAGGTCATTGCAGAA TGTTGACAATGACGTAATTGCAGCCCTACCGAATTCATACGGAAATGCCG CTCCTCATTATGTGCGAATATGCAAGAACTTGCTTCCACGAAGGTCTATC ACGAAGGATTTTTCGAAACCTGATGAGGGTATGGAAATCGAGTCTAAAGC TGATATTCATGAGACGTTACCCGCTGACAGAATGGTCATCACGCAGTCCA TACGGCAGGCAATAGAAGATATTTCCGACTATCTGGCTTGTGGCGTTTCA TTTATACTAGAAGGTCCAACGGGGTGTGGGAAGAGTACGATTCTGTCCTA TCTTGCTAGGGAAGTTTTGTATATTGGAACAAAACCCTCGGATTACTTCA AGGTTCCTGGTGTGACGTTCATACAGATGGATAACGCAATGATATCTTCA GATGGCGATTCGTTCACCTCCCTTGTGGGTGAAATTGTACCCTTACCAGA TGGGGGCGGATTCACATGGCGACCAGGACCTATTGGTCTCGCAGCTCGAA ATGGGGACTGGCTCGTATTTGAAAACATCAGCCGCGGGGACCAAAGCACC TCATCTGCTCTTCCCGTTCTCTTGCAGCTTGCAAAAGCGAAACCAGGTGA TACATTAGATGCCCCTGGACGGGGAGAACCGATCCGAATAGCGAAGGGAT TTCGCTGTATTGCAACACGAAGCACACCTGAAAGCGATGCGGACGACTCT TGGGAGCCTCCCGGAGGATGGAGCACATGGAAGCGGGTGCACATGCAAGG GCTTTCAAGTATTGAGAAAGTAGACGTTTTGAAGATGCGGTTTGCGTCTA TTCAAGACTGCGTAGAGCGAGTTGTGGCAGCAGTTGAAGAGACAGCTCGG TCTGTTGAAAGCATTAGAGGTACGCTTATGAGACGGCCAACTATGCGAGA AGCGATCCGTATCTGTCGTCGCCTGGAAGAAACAAGAAACTCGTTTAAGG CGTTATCTGTCGAACAAGCCGTGAAAGACTCATACGACGTTCTTGGATCA AGTTCTCACGTTCATTCTGAGCAAGAGCATATTTTGGGCATTCTAGCAAA GTCGTGGTCGCTGGGCCCTGAAACTGTGCGGGATCTGTGCCTCAAACACC GACCCATTGTTTTGAGCGATCAGAGCAAACTCAGTATTGGAAGAGCATCA TATCAGCTGAAAAGAAATAGACCTCAACCCTTCCGTCCAAAGTTGGCAAT TAACGGTCATACGTCAAGATTGCTTGAAATTGCGCTGAGGTCTTTACAAA TGCAAGAACATGTGTTGCTCGTTGGGGAGGCCGGATCAGGAAAGACATCT GTCGTGCAAGAACTAGCCTCTCTTCTAGACCAGGAGCTAGTGGTTGTCAA TCTTTCTCGTCAGAGTGACATCGGGGACTTAATCGGAGGTTTCAAGCCTT TGGAGCTCGAAAGTGCTGTGTCTACTCTCGGAAAGCGTTTTGAGCTTTTG TTTTGTCAAGTCATGTCGAAGGAAAAGAACACCCGCTTCCTTGATGCTTT GCAACGTGCTTGTACTTCCAGTCAAAACCACGAGCGGGCGATTAGGTTAA TGGCCGGGGCTTTGAAAGCTTTTCCAAAAGAGCAGAAAGCAGCTAATCAG CGGCTTTCACTAGAGTGGGATTCCATTGCGAAAGAGCTGGCAAAGTTACA AGTTTCGCTCTCACCATCTGAAACAGTGTGTGACGCTAGAGCAAAAAACT CCCCTGGTACAGATAAGCAAGAAGAACATGATGAGCCTCCTCGCAAAAGA CCTCGTTCGTCATCAGCGTACGGAGGAAATACGGAACATCGGCTCTCGAC AGCGAAGTCTTCTGCCAGAAATGAAAAGAAGAAGCTTGGATTCGCCTTTT CAGAAGGAGTCCTCGCGAAAGCCATGCGGGAAGGAAAATGGATTCTATTA GATGAAATAAACCTTGCCCCACCGGAACTTCTTGAGAGGCTCGTTAGCGT TATTGATAGAGGAGAAGTGCTGCTTGGAAATGAAAATGGTGATGTAGTCT CCCAAGCTCCTGGATTTTTCCTTTTCGGT
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Coding sequence (CDS) from alignment at NODE_954_length_15765_cov_4.409787:2..2680-

>Gcaud2754.t1 ID=Gcaud2754.t1|Name=Gcaud2754.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2301bp|location=Sequence derived from alignment at NODE_954_length_15765_cov_4.409787:2..2680- (Gracilaria caudata M_176_S67 male)
ATGGAAATTGACACGCCTGAACCTCGACATGAGCGTTCTCCTCGTTCCAG
AGCATTAGAAGTTTTTGGGGAGGTCATTCCAGATGTATTTCACTTCTCAT
CGGAACCTACCACCTCTTCGCTGGCAAAGGCATTTTCCCGCCCTGAATTA
ACTCCATTACATGTGTATCGTGCCGCATCTCATCTTCCGGAGCGCGTTCT
GCGCGAAGTTGTTCAAATTCTAACTTACGAACCGGGCAATGTCGCAGCAA
CCGCAGCGAGATTGTTGTCAATCATGAGAGGTCTTCCGGGAAACCTTGAA
CTAGCACTTCTGTTTCTTCAACAACACGTTCAGGACTTTAACAACTTTGA
TTTAAGAACAGTTACTTTTTTTGCGTTTATATGCGGTCCACTGCTTCAAA
ACATGTGTGACTGGGGCCGAACCATACAAAGAGCGGCTGATAACAACTGT
CCAGAATCTAAACTTGCGCTTTCCTGCCTGTATGATATCAAAGTCCATGA
GGCCATGGAGCCAATCACACATCTTTGCGAATGGGAGTCTGAGCACGAAC
ATGCAAACGCACCATCCTTCTGGCGTGAACTGCGATGGGCCTCATTCACA
CGGTCCCTTGTGAGCTCTAGCGTTCCCTCTATGTTTAGGTCATTGCAGAA
TGTTGACAATGACGTAATTGCAGCCCTACCGAATTCATACGGAAATGCCG
CTCCTCATTATGTGCGAATATGCAAGAACTTGCTTCCACGAAGGTCTATC
ACGAAGGATTTTTCGAAACCTGATGAGGGTATGGAAATCGAGTCTAAAGC
TGATATTCATGAGACGTTACCCGCTGACAGAATGGTCATCACGCAGTCCA
TACGGCAGGCAATAGAAGATATTTCCGACTATCTGGCTTGTGGCGTTTCA
TTTATACTAGAAGGTCCAACGGGGTGTGGGAAGAGTACGATTCTGTCCTA
TCTTGCTAGGGAAGTTTTGTATATTGGAACAAAACCCTCGGATTACTTCA
AGGTTCCTGGTGTGACGTTCATACAGATGGATAACGCAATGATATCTTCA
GATGGCGATTCGTTCACCTCCCTTGTGGGTGAAATTGTACCCTTACCAGA
TGGGGGCGGATTCACATGGCGACCAGGACCTATTGGTCTCGCAGCTCGAA
ATGGGGACTGGCTCGTATTTGAAAACATCAGCCGCGGGGACCAAAGCACC
TCATCTGCTCTTCCCGTTCTCTTGCAGCTTGCAAAAGCGAAACCAGGTGA
TACATTAGATGCCCCTGGACGGGGAGAACCGATCCGAATAGCGAAGGGAT
TTCGCTGTATTGCAACACGAAGCACACCTGAAAGCGATGCGGACGACTCT
TGGGAGCCTCCCGGAGGATGGAGCACATGGAAGCGGGTGCACATGCAAGG
GCTTTCAAGTATTGAGAAAGTAGACGTTTTGAAGATGCGGTTTGCGTCTA
TTCAAGACTGCGTAGAGCGAGTTGTGGCAGCAGTTGAAGAGACAGCTCGG
TCTGTTGAAAGCATTAGAGGTACGCTTATGAGACGGCCAACTATGCGAGA
AGCGATCCGTATCTGTCGTCGCCTGGAAGAAACAAGAAACTCGTTTAAGG
CGTTATCTGTCGAACAAGCCGTGAAAGACTCATACGACGTTCTTGGATCA
AGTTCTCACGTTCATTCTGAGCAAGAGCATATTTTGGGCATTCTAGCAAA
GTCGTGGTCGCTGGGCCCTGAAACTGTGCGGGATCTGTGCCTCAAACACC
GACCCATTGTTTTGAGCGATCAGAGCAAACTCAGTATTGGAAGAGCATCA
TATCAGCTGAAAAGAAATAGACCTCAACCCTTCCGTCCAAAGTTGGCAAT
TAACGGTCATACGTCAAGATTGCTTGAAATTGCGCTGAGGTCTTTACAAA
TGCAAGAACATGTGTTGCTCGTTGGGGAGGCCGGATCAGGAAAGACATCT
GTCGTGCAAGAACTAGCCTCTCTTCTAGACCAGGAGCTACAAGAAGAACA
TGATGAGCCTCCTCGCAAAAGACCTCGTTCGTCATCAGCGTACGGAGGAA
ATACGGAACATCGGCTCTCGACAGCGAAGTCTTCTGCCAGAAATGAAAAG
AAGAAGCTTGGATTCGCCTTTTCAGAAGGAGTCCTCGCGAAAGCCATGCG
GGAAGGAAAATGGATTCTATTAGATGAAATAAACCTTGCCCCACCGGAAC
TTCTTGAGAGGCTCGTTAGCGTTATTGATAGAGGAGAAGTGCTGCTTGGA
AATGAAAATGGTGATGTAGTCTCCCAAGCTCCTGGATTTTTCCTTTTCGG
T
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