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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005705170.1 |
| PFAMs | AAA_5,VWA,zf-RVT |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K14572 |
| KEGG Pathway | ko03008,map03008 |
| Evalue | 1.83e-45 |
| EggNOG OGs | COG5271@1|root,KOG1808@2759|Eukaryota |
| Description | Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits |
| COG category | M |
| BRITE | ko00000,ko00001,ko03009 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2754.t1.intron1 | Gcaud2754.t1.intron1 | Gracilaria caudata M_176_S67 male | intron | NODE_954_length_15765_cov_4.409787 314..691 - |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2754.t1.start1 | Gcaud2754.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_954_length_15765_cov_4.409787 2678..2680 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2754.t1 ID=Gcaud2754.t1|Name=Gcaud2754.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=767bp MEIDTPEPRHERSPRSRALEVFGEVIPDVFHFSSEPTTSSLAKAFSRPEL TPLHVYRAASHLPERVLREVVQILTYEPGNVAATAARLLSIMRGLPGNLE LALLFLQQHVQDFNNFDLRTVTFFAFICGPLLQNMCDWGRTIQRAADNNC PESKLALSCLYDIKVHEAMEPITHLCEWESEHEHANAPSFWRELRWASFT RSLVSSSVPSMFRSLQNVDNDVIAALPNSYGNAAPHYVRICKNLLPRRSI TKDFSKPDEGMEIESKADIHETLPADRMVITQSIRQAIEDISDYLACGVS FILEGPTGCGKSTILSYLAREVLYIGTKPSDYFKVPGVTFIQMDNAMISS DGDSFTSLVGEIVPLPDGGGFTWRPGPIGLAARNGDWLVFENISRGDQST SSALPVLLQLAKAKPGDTLDAPGRGEPIRIAKGFRCIATRSTPESDADDS WEPPGGWSTWKRVHMQGLSSIEKVDVLKMRFASIQDCVERVVAAVEETAR SVESIRGTLMRRPTMREAIRICRRLEETRNSFKALSVEQAVKDSYDVLGS SSHVHSEQEHILGILAKSWSLGPETVRDLCLKHRPIVLSDQSKLSIGRAS YQLKRNRPQPFRPKLAINGHTSRLLEIALRSLQMQEHVLLVGEAGSGKTS VVQELASLLDQELQEEHDEPPRKRPRSSSAYGGNTEHRLSTAKSSARNEK KKLGFAFSEGVLAKAMREGKWILLDEINLAPPELLERLVSVIDRGEVLLG NENGDVVSQAPGFFLFG back to topspliced messenger RNA >Gcaud2754.t1 ID=Gcaud2754.t1|Name=Gcaud2754.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2301bp|location=Sequence derived from alignment at NODE_954_length_15765_cov_4.409787:2..2680- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGAAATTGACACGCCTGAACCTCGACATGAGCGTTCTCCTCGTTCCAG AGCATTAGAAGTTTTTGGGGAGGTCATTCCAGATGTATTTCACTTCTCAT CGGAACCTACCACCTCTTCGCTGGCAAAGGCATTTTCCCGCCCTGAATTA ACTCCATTACATGTGTATCGTGCCGCATCTCATCTTCCGGAGCGCGTTCT GCGCGAAGTTGTTCAAATTCTAACTTACGAACCGGGCAATGTCGCAGCAA CCGCAGCGAGATTGTTGTCAATCATGAGAGGTCTTCCGGGAAACCTTGAA CTAGCACTTCTGTTTCTTCAACAACACGTTCAGGACTTTAACAACTTTGA TTTAAGAACAGTTACTTTTTTTGCGTTTATATGCGGTCCACTGCTTCAAA ACATGTGTGACTGGGGCCGAACCATACAAAGAGCGGCTGATAACAACTGT CCAGAATCTAAACTTGCGCTTTCCTGCCTGTATGATATCAAAGTCCATGA GGCCATGGAGCCAATCACACATCTTTGCGAATGGGAGTCTGAGCACGAAC ATGCAAACGCACCATCCTTCTGGCGTGAACTGCGATGGGCCTCATTCACA CGGTCCCTTGTGAGCTCTAGCGTTCCCTCTATGTTTAGGTCATTGCAGAA TGTTGACAATGACGTAATTGCAGCCCTACCGAATTCATACGGAAATGCCG CTCCTCATTATGTGCGAATATGCAAGAACTTGCTTCCACGAAGGTCTATC ACGAAGGATTTTTCGAAACCTGATGAGGGTATGGAAATCGAGTCTAAAGC TGATATTCATGAGACGTTACCCGCTGACAGAATGGTCATCACGCAGTCCA TACGGCAGGCAATAGAAGATATTTCCGACTATCTGGCTTGTGGCGTTTCA TTTATACTAGAAGGTCCAACGGGGTGTGGGAAGAGTACGATTCTGTCCTA TCTTGCTAGGGAAGTTTTGTATATTGGAACAAAACCCTCGGATTACTTCA AGGTTCCTGGTGTGACGTTCATACAGATGGATAACGCAATGATATCTTCA GATGGCGATTCGTTCACCTCCCTTGTGGGTGAAATTGTACCCTTACCAGA TGGGGGCGGATTCACATGGCGACCAGGACCTATTGGTCTCGCAGCTCGAA ATGGGGACTGGCTCGTATTTGAAAACATCAGCCGCGGGGACCAAAGCACC TCATCTGCTCTTCCCGTTCTCTTGCAGCTTGCAAAAGCGAAACCAGGTGA TACATTAGATGCCCCTGGACGGGGAGAACCGATCCGAATAGCGAAGGGAT TTCGCTGTATTGCAACACGAAGCACACCTGAAAGCGATGCGGACGACTCT TGGGAGCCTCCCGGAGGATGGAGCACATGGAAGCGGGTGCACATGCAAGG GCTTTCAAGTATTGAGAAAGTAGACGTTTTGAAGATGCGGTTTGCGTCTA TTCAAGACTGCGTAGAGCGAGTTGTGGCAGCAGTTGAAGAGACAGCTCGG TCTGTTGAAAGCATTAGAGGTACGCTTATGAGACGGCCAACTATGCGAGA AGCGATCCGTATCTGTCGTCGCCTGGAAGAAACAAGAAACTCGTTTAAGG CGTTATCTGTCGAACAAGCCGTGAAAGACTCATACGACGTTCTTGGATCA AGTTCTCACGTTCATTCTGAGCAAGAGCATATTTTGGGCATTCTAGCAAA GTCGTGGTCGCTGGGCCCTGAAACTGTGCGGGATCTGTGCCTCAAACACC GACCCATTGTTTTGAGCGATCAGAGCAAACTCAGTATTGGAAGAGCATCA TATCAGCTGAAAAGAAATAGACCTCAACCCTTCCGTCCAAAGTTGGCAAT TAACGGTCATACGTCAAGATTGCTTGAAATTGCGCTGAGGTCTTTACAAA TGCAAGAACATGTGTTGCTCGTTGGGGAGGCCGGATCAGGAAAGACATCT GTCGTGCAAGAACTAGCCTCTCTTCTAGACCAGGAGCTACAAGAAGAACA TGATGAGCCTCCTCGCAAAAGACCTCGTTCGTCATCAGCGTACGGAGGAA ATACGGAACATCGGCTCTCGACAGCGAAGTCTTCTGCCAGAAATGAAAAG AAGAAGCTTGGATTCGCCTTTTCAGAAGGAGTCCTCGCGAAAGCCATGCG GGAAGGAAAATGGATTCTATTAGATGAAATAAACCTTGCCCCACCGGAAC TTCTTGAGAGGCTCGTTAGCGTTATTGATAGAGGAGAAGTGCTGCTTGGA AATGAAAATGGTGATGTAGTCTCCCAAGCTCCTGGATTTTTCCTTTTCGG T back to topprotein sequence of Gcaud2754.t1 >Gcaud2754.t1 ID=Gcaud2754.t1|Name=Gcaud2754.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=767bp
MEIDTPEPRHERSPRSRALEVFGEVIPDVFHFSSEPTTSSLAKAFSRPEL TPLHVYRAASHLPERVLREVVQILTYEPGNVAATAARLLSIMRGLPGNLE LALLFLQQHVQDFNNFDLRTVTFFAFICGPLLQNMCDWGRTIQRAADNNC PESKLALSCLYDIKVHEAMEPITHLCEWESEHEHANAPSFWRELRWASFT RSLVSSSVPSMFRSLQNVDNDVIAALPNSYGNAAPHYVRICKNLLPRRSI TKDFSKPDEGMEIESKADIHETLPADRMVITQSIRQAIEDISDYLACGVS FILEGPTGCGKSTILSYLAREVLYIGTKPSDYFKVPGVTFIQMDNAMISS DGDSFTSLVGEIVPLPDGGGFTWRPGPIGLAARNGDWLVFENISRGDQST SSALPVLLQLAKAKPGDTLDAPGRGEPIRIAKGFRCIATRSTPESDADDS WEPPGGWSTWKRVHMQGLSSIEKVDVLKMRFASIQDCVERVVAAVEETAR SVESIRGTLMRRPTMREAIRICRRLEETRNSFKALSVEQAVKDSYDVLGS SSHVHSEQEHILGILAKSWSLGPETVRDLCLKHRPIVLSDQSKLSIGRAS YQLKRNRPQPFRPKLAINGHTSRLLEIALRSLQMQEHVLLVGEAGSGKTS VVQELASLLDQELQEEHDEPPRKRPRSSSAYGGNTEHRLSTAKSSARNEK KKLGFAFSEGVLAKAMREGKWILLDEINLAPPELLERLVSVIDRGEVLLG NENGDVVSQAPGFFLFG back to topmRNA from alignment at NODE_954_length_15765_cov_4.409787:2..2680- Legend: polypeptideCDSexonstart_codonintron Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2754.t1 ID=Gcaud2754.t1|Name=Gcaud2754.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2679bp|location=Sequence derived from alignment at NODE_954_length_15765_cov_4.409787:2..2680- (Gracilaria caudata M_176_S67 male) ATGGAAATTGACACGCCTGAACCTCGACATGAGCGTTCTCCTCGTTCCAG
AGCATTAGAAGTTTTTGGGGAGGTCATTCCAGATGTATTTCACTTCTCAT
CGGAACCTACCACCTCTTCGCTGGCAAAGGCATTTTCCCGCCCTGAATTA
ACTCCATTACATGTGTATCGTGCCGCATCTCATCTTCCGGAGCGCGTTCT
GCGCGAAGTTGTTCAAATTCTAACTTACGAACCGGGCAATGTCGCAGCAA
CCGCAGCGAGATTGTTGTCAATCATGAGAGGTCTTCCGGGAAACCTTGAA
CTAGCACTTCTGTTTCTTCAACAACACGTTCAGGACTTTAACAACTTTGA
TTTAAGAACAGTTACTTTTTTTGCGTTTATATGCGGTCCACTGCTTCAAA
ACATGTGTGACTGGGGCCGAACCATACAAAGAGCGGCTGATAACAACTGT
CCAGAATCTAAACTTGCGCTTTCCTGCCTGTATGATATCAAAGTCCATGA
GGCCATGGAGCCAATCACACATCTTTGCGAATGGGAGTCTGAGCACGAAC
ATGCAAACGCACCATCCTTCTGGCGTGAACTGCGATGGGCCTCATTCACA
CGGTCCCTTGTGAGCTCTAGCGTTCCCTCTATGTTTAGGTCATTGCAGAA
TGTTGACAATGACGTAATTGCAGCCCTACCGAATTCATACGGAAATGCCG
CTCCTCATTATGTGCGAATATGCAAGAACTTGCTTCCACGAAGGTCTATC
ACGAAGGATTTTTCGAAACCTGATGAGGGTATGGAAATCGAGTCTAAAGC
TGATATTCATGAGACGTTACCCGCTGACAGAATGGTCATCACGCAGTCCA
TACGGCAGGCAATAGAAGATATTTCCGACTATCTGGCTTGTGGCGTTTCA
TTTATACTAGAAGGTCCAACGGGGTGTGGGAAGAGTACGATTCTGTCCTA
TCTTGCTAGGGAAGTTTTGTATATTGGAACAAAACCCTCGGATTACTTCA
AGGTTCCTGGTGTGACGTTCATACAGATGGATAACGCAATGATATCTTCA
GATGGCGATTCGTTCACCTCCCTTGTGGGTGAAATTGTACCCTTACCAGA
TGGGGGCGGATTCACATGGCGACCAGGACCTATTGGTCTCGCAGCTCGAA
ATGGGGACTGGCTCGTATTTGAAAACATCAGCCGCGGGGACCAAAGCACC
TCATCTGCTCTTCCCGTTCTCTTGCAGCTTGCAAAAGCGAAACCAGGTGA
TACATTAGATGCCCCTGGACGGGGAGAACCGATCCGAATAGCGAAGGGAT
TTCGCTGTATTGCAACACGAAGCACACCTGAAAGCGATGCGGACGACTCT
TGGGAGCCTCCCGGAGGATGGAGCACATGGAAGCGGGTGCACATGCAAGG
GCTTTCAAGTATTGAGAAAGTAGACGTTTTGAAGATGCGGTTTGCGTCTA
TTCAAGACTGCGTAGAGCGAGTTGTGGCAGCAGTTGAAGAGACAGCTCGG
TCTGTTGAAAGCATTAGAGGTACGCTTATGAGACGGCCAACTATGCGAGA
AGCGATCCGTATCTGTCGTCGCCTGGAAGAAACAAGAAACTCGTTTAAGG
CGTTATCTGTCGAACAAGCCGTGAAAGACTCATACGACGTTCTTGGATCA
AGTTCTCACGTTCATTCTGAGCAAGAGCATATTTTGGGCATTCTAGCAAA
GTCGTGGTCGCTGGGCCCTGAAACTGTGCGGGATCTGTGCCTCAAACACC
GACCCATTGTTTTGAGCGATCAGAGCAAACTCAGTATTGGAAGAGCATCA
TATCAGCTGAAAAGAAATAGACCTCAACCCTTCCGTCCAAAGTTGGCAAT
TAACGGTCATACGTCAAGATTGCTTGAAATTGCGCTGAGGTCTTTACAAA
TGCAAGAACATGTGTTGCTCGTTGGGGAGGCCGGATCAGGAAAGACATCT
GTCGTGCAAGAACTAGCCTCTCTTCTAGACCAGGAGCTAGTGGTTGTCAA
TCTTTCTCGTCAGAGTGACATCGGGGACTTAATCGGAGGTTTCAAGCCTT
TGGAGCTCGAAAGTGCTGTGTCTACTCTCGGAAAGCGTTTTGAGCTTTTG
TTTTGTCAAGTCATGTCGAAGGAAAAGAACACCCGCTTCCTTGATGCTTT
GCAACGTGCTTGTACTTCCAGTCAAAACCACGAGCGGGCGATTAGGTTAA
TGGCCGGGGCTTTGAAAGCTTTTCCAAAAGAGCAGAAAGCAGCTAATCAG
CGGCTTTCACTAGAGTGGGATTCCATTGCGAAAGAGCTGGCAAAGTTACA
AGTTTCGCTCTCACCATCTGAAACAGTGTGTGACGCTAGAGCAAAAAACT
CCCCTGGTACAGATAAGCAAGAAGAACATGATGAGCCTCCTCGCAAAAGA
CCTCGTTCGTCATCAGCGTACGGAGGAAATACGGAACATCGGCTCTCGAC
AGCGAAGTCTTCTGCCAGAAATGAAAAGAAGAAGCTTGGATTCGCCTTTT
CAGAAGGAGTCCTCGCGAAAGCCATGCGGGAAGGAAAATGGATTCTATTA
GATGAAATAAACCTTGCCCCACCGGAACTTCTTGAGAGGCTCGTTAGCGT
TATTGATAGAGGAGAAGTGCTGCTTGGAAATGAAAATGGTGATGTAGTCT
CCCAAGCTCCTGGATTTTTCCTTTTCGGT back to topCoding sequence (CDS) from alignment at NODE_954_length_15765_cov_4.409787:2..2680- >Gcaud2754.t1 ID=Gcaud2754.t1|Name=Gcaud2754.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2301bp|location=Sequence derived from alignment at NODE_954_length_15765_cov_4.409787:2..2680- (Gracilaria caudata M_176_S67 male) ATGGAAATTGACACGCCTGAACCTCGACATGAGCGTTCTCCTCGTTCCAG AGCATTAGAAGTTTTTGGGGAGGTCATTCCAGATGTATTTCACTTCTCAT CGGAACCTACCACCTCTTCGCTGGCAAAGGCATTTTCCCGCCCTGAATTA ACTCCATTACATGTGTATCGTGCCGCATCTCATCTTCCGGAGCGCGTTCT GCGCGAAGTTGTTCAAATTCTAACTTACGAACCGGGCAATGTCGCAGCAA CCGCAGCGAGATTGTTGTCAATCATGAGAGGTCTTCCGGGAAACCTTGAA CTAGCACTTCTGTTTCTTCAACAACACGTTCAGGACTTTAACAACTTTGA TTTAAGAACAGTTACTTTTTTTGCGTTTATATGCGGTCCACTGCTTCAAA ACATGTGTGACTGGGGCCGAACCATACAAAGAGCGGCTGATAACAACTGT CCAGAATCTAAACTTGCGCTTTCCTGCCTGTATGATATCAAAGTCCATGA GGCCATGGAGCCAATCACACATCTTTGCGAATGGGAGTCTGAGCACGAAC ATGCAAACGCACCATCCTTCTGGCGTGAACTGCGATGGGCCTCATTCACA CGGTCCCTTGTGAGCTCTAGCGTTCCCTCTATGTTTAGGTCATTGCAGAA TGTTGACAATGACGTAATTGCAGCCCTACCGAATTCATACGGAAATGCCG CTCCTCATTATGTGCGAATATGCAAGAACTTGCTTCCACGAAGGTCTATC ACGAAGGATTTTTCGAAACCTGATGAGGGTATGGAAATCGAGTCTAAAGC TGATATTCATGAGACGTTACCCGCTGACAGAATGGTCATCACGCAGTCCA TACGGCAGGCAATAGAAGATATTTCCGACTATCTGGCTTGTGGCGTTTCA TTTATACTAGAAGGTCCAACGGGGTGTGGGAAGAGTACGATTCTGTCCTA TCTTGCTAGGGAAGTTTTGTATATTGGAACAAAACCCTCGGATTACTTCA AGGTTCCTGGTGTGACGTTCATACAGATGGATAACGCAATGATATCTTCA GATGGCGATTCGTTCACCTCCCTTGTGGGTGAAATTGTACCCTTACCAGA TGGGGGCGGATTCACATGGCGACCAGGACCTATTGGTCTCGCAGCTCGAA ATGGGGACTGGCTCGTATTTGAAAACATCAGCCGCGGGGACCAAAGCACC TCATCTGCTCTTCCCGTTCTCTTGCAGCTTGCAAAAGCGAAACCAGGTGA TACATTAGATGCCCCTGGACGGGGAGAACCGATCCGAATAGCGAAGGGAT TTCGCTGTATTGCAACACGAAGCACACCTGAAAGCGATGCGGACGACTCT TGGGAGCCTCCCGGAGGATGGAGCACATGGAAGCGGGTGCACATGCAAGG GCTTTCAAGTATTGAGAAAGTAGACGTTTTGAAGATGCGGTTTGCGTCTA TTCAAGACTGCGTAGAGCGAGTTGTGGCAGCAGTTGAAGAGACAGCTCGG TCTGTTGAAAGCATTAGAGGTACGCTTATGAGACGGCCAACTATGCGAGA AGCGATCCGTATCTGTCGTCGCCTGGAAGAAACAAGAAACTCGTTTAAGG CGTTATCTGTCGAACAAGCCGTGAAAGACTCATACGACGTTCTTGGATCA AGTTCTCACGTTCATTCTGAGCAAGAGCATATTTTGGGCATTCTAGCAAA GTCGTGGTCGCTGGGCCCTGAAACTGTGCGGGATCTGTGCCTCAAACACC GACCCATTGTTTTGAGCGATCAGAGCAAACTCAGTATTGGAAGAGCATCA TATCAGCTGAAAAGAAATAGACCTCAACCCTTCCGTCCAAAGTTGGCAAT TAACGGTCATACGTCAAGATTGCTTGAAATTGCGCTGAGGTCTTTACAAA TGCAAGAACATGTGTTGCTCGTTGGGGAGGCCGGATCAGGAAAGACATCT GTCGTGCAAGAACTAGCCTCTCTTCTAGACCAGGAGCTACAAGAAGAACA TGATGAGCCTCCTCGCAAAAGACCTCGTTCGTCATCAGCGTACGGAGGAA ATACGGAACATCGGCTCTCGACAGCGAAGTCTTCTGCCAGAAATGAAAAG AAGAAGCTTGGATTCGCCTTTTCAGAAGGAGTCCTCGCGAAAGCCATGCG GGAAGGAAAATGGATTCTATTAGATGAAATAAACCTTGCCCCACCGGAAC TTCTTGAGAGGCTCGTTAGCGTTATTGATAGAGGAGAAGTGCTGCTTGGA AATGAAAATGGTGATGTAGTCTCCCAAGCTCCTGGATTTTTCCTTTTCGG T back to top
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