Gcaud2746.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2746.t1
Unique Name	Gcaud2746.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	401

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_724_length_19053_cov_4.072935	contig	NODE_724_length_19053_cov_4.072935:1612..2814 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D8LI59
Preferred name	SMYD5
PFAMs	SET,zf-MYND
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01369,ko:K17770
KEGG TC	3.A.8.1
KEGG Pathway	ko04142,ko04612,map04142,map04612
GOs	GO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008213,GO:0008757,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018193,GO:0018205,GO:0019538,GO:0031974,GO:0031981,GO:0032259,GO:0034968,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0051276,GO:0070013,GO:0071704,GO:0071840,GO:1901564
Evalue	6.04e-64
EggNOG OGs	COG2940@1\|root,KOG2084@2759\|Eukaryota
EC	3.4.22.34
Description	methyltransferase activity
COG category	E
BRITE	ko00000,ko00001,ko01000,ko01002,ko02000,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2746	Gcaud2746	Gracilaria caudata M_176_S67 male	gene	NODE_724_length_19053_cov_4.072935 1612..2814 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2746.t1.start1	Gcaud2746.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_724_length_19053_cov_4.072935 1612..1614 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2746.t1.CDS1	Gcaud2746.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_724_length_19053_cov_4.072935 1612..2814 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2746.t1.exon1	Gcaud2746.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_724_length_19053_cov_4.072935 1612..2814 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2746.t1.stop1	Gcaud2746.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_724_length_19053_cov_4.072935 2812..2814 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2746.t1	Gcaud2746.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_724_length_19053_cov_4.072935 1612..2814 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_724_length_19053_cov_4.072935:1612..2814+
coding sequence from alignment at NODE_724_length_19053_cov_4.072935:1612..2814+

mRNA sequence

>Gcaud2746.t1 ID=Gcaud2746.t1|Name=Gcaud2746.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=401bp
MSTAFLHSFFPPIPLNRRRSITRFKTCNVNACAASSISTPPSATRGRILT
PSETNAGALTTPIVHRYLSDNDDRFAMWYTYRPRNWENTPLTPPGSLTGL
IALALSEDGITWRRVAGPHNGAVLTNNTEDWWAFDTAHVSCGDVFIDSNS
RIRADSGVYFMYYTGGDGEKVSVSGMDMPGMRMRIGLALSKDGEHFTRVE
GAYPSSAVLDVGNAGEFDELFVSSPNVTRVEKGYTMHYYTYNVEHKMYMV
GRAFSADGLRFEKRGIALKGSGIAGAADERGVWRPVVVKKGSTYVMFVVL
FDANRTTRIGMCESNDCENWGPITVVLDVGERESWDEAGVSHPYVVVLED
GSALLYYVGKSKVFDVDSGNGTSIGVAKSEGTDWTNFCRTTGTDESTFEQ
*

spliced messenger RNA

>Gcaud2746.t1 ID=Gcaud2746.t1|Name=Gcaud2746.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at NODE_724_length_19053_cov_4.072935:1612..2814+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAACCGCGTTCCTGCACTCTTTCTTTCCGCCCATTCCCCTCAATCG
TCGCCGCTCAATAACACGCTTCAAAACGTGCAATGTTAATGCCTGTGCCG
CATCATCAATATCAACACCACCTTCTGCTACGAGAGGCCGAATACTCACC
CCTTCTGAGACAAATGCCGGTGCTCTTACTACCCCGATCGTTCATCGCTA
CCTATCTGACAACGATGATCGTTTTGCCATGTGGTACACATACAGACCTC
GAAACTGGGAGAACACCCCTCTCACGCCCCCCGGGTCGCTCACTGGTCTC
ATTGCTCTCGCCCTATCGGAAGATGGTATAACTTGGCGTCGTGTGGCCGG
TCCGCACAATGGTGCTGTGCTCACCAACAACACAGAGGATTGGTGGGCCT
TCGACACCGCACACGTCAGTTGTGGAGACGTATTCATTGATTCCAACTCG
CGCATAAGAGCAGATTCTGGAGTGTACTTCATGTACTACACAGGTGGCGA
TGGAGAGAAAGTTTCTGTAAGCGGCATGGATATGCCTGGTATGCGAATGC
GAATTGGCCTTGCCCTCAGTAAGGACGGTGAGCACTTCACCAGAGTTGAG
GGTGCCTATCCTTCTTCAGCTGTGCTTGATGTGGGCAATGCAGGTGAATT
TGATGAATTGTTTGTATCGTCTCCGAACGTTACTCGCGTAGAAAAGGGAT
ACACCATGCACTACTACACATATAACGTAGAGCACAAAATGTACATGGTA
GGTCGGGCATTTTCCGCTGATGGTTTACGATTTGAAAAAAGGGGAATCGC
TTTGAAGGGTTCTGGAATAGCCGGGGCGGCTGATGAACGTGGAGTTTGGA
GACCAGTTGTTGTGAAGAAAGGAAGTACGTATGTCATGTTTGTTGTGCTC
TTTGATGCCAATCGCACAACACGGATAGGGATGTGCGAGAGCAACGACTG
TGAGAACTGGGGACCAATCACAGTTGTGTTGGATGTTGGCGAAAGAGAGT
CTTGGGACGAGGCAGGTGTTTCACATCCTTACGTTGTAGTGCTTGAGGAC
GGCTCTGCGCTTCTGTACTACGTTGGTAAGTCCAAAGTCTTTGATGTTGA
TTCGGGGAATGGTACCAGTATTGGAGTTGCAAAAAGTGAAGGAACAGACT
GGACAAACTTCTGCAGAACAACCGGCACAGATGAAAGCACATTCGAACAG
TAA

protein sequence of Gcaud2746.t1

>Gcaud2746.t1 ID=Gcaud2746.t1|Name=Gcaud2746.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=401bp
MSTAFLHSFFPPIPLNRRRSITRFKTCNVNACAASSISTPPSATRGRILT
PSETNAGALTTPIVHRYLSDNDDRFAMWYTYRPRNWENTPLTPPGSLTGL
IALALSEDGITWRRVAGPHNGAVLTNNTEDWWAFDTAHVSCGDVFIDSNS
RIRADSGVYFMYYTGGDGEKVSVSGMDMPGMRMRIGLALSKDGEHFTRVE
GAYPSSAVLDVGNAGEFDELFVSSPNVTRVEKGYTMHYYTYNVEHKMYMV
GRAFSADGLRFEKRGIALKGSGIAGAADERGVWRPVVVKKGSTYVMFVVL
FDANRTTRIGMCESNDCENWGPITVVLDVGERESWDEAGVSHPYVVVLED
GSALLYYVGKSKVFDVDSGNGTSIGVAKSEGTDWTNFCRTTGTDESTFEQ
*

mRNA from alignment at NODE_724_length_19053_cov_4.072935:1612..2814+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2746.t1 ID=Gcaud2746.t1|Name=Gcaud2746.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at NODE_724_length_19053_cov_4.072935:1612..2814+ (Gracilaria caudata M_176_S67 male)
ATGTCAACCGCGTTCCTGCACTCTTTCTTTCCGCCCATTCCCCTCAATCG
TCGCCGCTCAATAACACGCTTCAAAACGTGCAATGTTAATGCCTGTGCCG
CATCATCAATATCAACACCACCTTCTGCTACGAGAGGCCGAATACTCACC
CCTTCTGAGACAAATGCCGGTGCTCTTACTACCCCGATCGTTCATCGCTA
CCTATCTGACAACGATGATCGTTTTGCCATGTGGTACACATACAGACCTC
GAAACTGGGAGAACACCCCTCTCACGCCCCCCGGGTCGCTCACTGGTCTC
ATTGCTCTCGCCCTATCGGAAGATGGTATAACTTGGCGTCGTGTGGCCGG
TCCGCACAATGGTGCTGTGCTCACCAACAACACAGAGGATTGGTGGGCCT
TCGACACCGCACACGTCAGTTGTGGAGACGTATTCATTGATTCCAACTCG
CGCATAAGAGCAGATTCTGGAGTGTACTTCATGTACTACACAGGTGGCGA
TGGAGAGAAAGTTTCTGTAAGCGGCATGGATATGCCTGGTATGCGAATGC
GAATTGGCCTTGCCCTCAGTAAGGACGGTGAGCACTTCACCAGAGTTGAG
GGTGCCTATCCTTCTTCAGCTGTGCTTGATGTGGGCAATGCAGGTGAATT
TGATGAATTGTTTGTATCGTCTCCGAACGTTACTCGCGTAGAAAAGGGAT
ACACCATGCACTACTACACATATAACGTAGAGCACAAAATGTACATGGTA
GGTCGGGCATTTTCCGCTGATGGTTTACGATTTGAAAAAAGGGGAATCGC
TTTGAAGGGTTCTGGAATAGCCGGGGCGGCTGATGAACGTGGAGTTTGGA
GACCAGTTGTTGTGAAGAAAGGAAGTACGTATGTCATGTTTGTTGTGCTC
TTTGATGCCAATCGCACAACACGGATAGGGATGTGCGAGAGCAACGACTG
TGAGAACTGGGGACCAATCACAGTTGTGTTGGATGTTGGCGAAAGAGAGT
CTTGGGACGAGGCAGGTGTTTCACATCCTTACGTTGTAGTGCTTGAGGAC
GGCTCTGCGCTTCTGTACTACGTTGGTAAGTCCAAAGTCTTTGATGTTGA
TTCGGGGAATGGTACCAGTATTGGAGTTGCAAAAAGTGAAGGAACAGACT
GGACAAACTTCTGCAGAACAACCGGCACAGATGAAAGCACATTCGAACAG
TAA

Coding sequence (CDS) from alignment at NODE_724_length_19053_cov_4.072935:1612..2814+

>Gcaud2746.t1 ID=Gcaud2746.t1|Name=Gcaud2746.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1203bp|location=Sequence derived from alignment at NODE_724_length_19053_cov_4.072935:1612..2814+ (Gracilaria caudata M_176_S67 male)
ATGTCAACCGCGTTCCTGCACTCTTTCTTTCCGCCCATTCCCCTCAATCG
TCGCCGCTCAATAACACGCTTCAAAACGTGCAATGTTAATGCCTGTGCCG
CATCATCAATATCAACACCACCTTCTGCTACGAGAGGCCGAATACTCACC
CCTTCTGAGACAAATGCCGGTGCTCTTACTACCCCGATCGTTCATCGCTA
CCTATCTGACAACGATGATCGTTTTGCCATGTGGTACACATACAGACCTC
GAAACTGGGAGAACACCCCTCTCACGCCCCCCGGGTCGCTCACTGGTCTC
ATTGCTCTCGCCCTATCGGAAGATGGTATAACTTGGCGTCGTGTGGCCGG
TCCGCACAATGGTGCTGTGCTCACCAACAACACAGAGGATTGGTGGGCCT
TCGACACCGCACACGTCAGTTGTGGAGACGTATTCATTGATTCCAACTCG
CGCATAAGAGCAGATTCTGGAGTGTACTTCATGTACTACACAGGTGGCGA
TGGAGAGAAAGTTTCTGTAAGCGGCATGGATATGCCTGGTATGCGAATGC
GAATTGGCCTTGCCCTCAGTAAGGACGGTGAGCACTTCACCAGAGTTGAG
GGTGCCTATCCTTCTTCAGCTGTGCTTGATGTGGGCAATGCAGGTGAATT
TGATGAATTGTTTGTATCGTCTCCGAACGTTACTCGCGTAGAAAAGGGAT
ACACCATGCACTACTACACATATAACGTAGAGCACAAAATGTACATGGTA
GGTCGGGCATTTTCCGCTGATGGTTTACGATTTGAAAAAAGGGGAATCGC
TTTGAAGGGTTCTGGAATAGCCGGGGCGGCTGATGAACGTGGAGTTTGGA
GACCAGTTGTTGTGAAGAAAGGAAGTACGTATGTCATGTTTGTTGTGCTC
TTTGATGCCAATCGCACAACACGGATAGGGATGTGCGAGAGCAACGACTG
TGAGAACTGGGGACCAATCACAGTTGTGTTGGATGTTGGCGAAAGAGAGT
CTTGGGACGAGGCAGGTGTTTCACATCCTTACGTTGTAGTGCTTGAGGAC
GGCTCTGCGCTTCTGTACTACGTTGGTAAGTCCAAAGTCTTTGATGTTGA
TTCGGGGAATGGTACCAGTATTGGAGTTGCAAAAAGTGAAGGAACAGACT
GGACAAACTTCTGCAGAACAACCGGCACAGATGAAAGCACATTCGAACAG
TAA