Gcaud2745.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2745.t1
Unique Name	Gcaud2745.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	101

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_724_length_19053_cov_4.072935	contig	NODE_724_length_19053_cov_4.072935:2..304 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	281687.CJA06384
Preferred name	RAD23B
PFAMs	UBA,XPC-binding,ubiquitin
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K10839
KEGG Pathway	ko03420,ko04141,map03420,map04141
GOs	GO:0000003,GO:0000109,GO:0000715,GO:0002020,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006294,GO:0006457,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0009790,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0015630,GO:0016043,GO:0016579,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0019953,GO:0022414,GO:0022607,GO:0030162,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031593,GO:0031647,GO:0031648,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0036211,GO:0042176,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043900,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045069,GO:0045070,GO:0045732,GO:0045787,GO:0045862,GO:0046483,GO:0048232,GO:0048513,GO:0048518,GO:0048522,GO:0048524,GO:0048568,GO:0048609,GO:0048731,GO:0048856,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051276,GO:0051704,GO:0051716,GO:0051726,GO:0060255,GO:0061136,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070646,GO:0070647,GO:0070911,GO:0071704,GO:0071824,GO:0071840,GO:0071942,GO:0080090,GO:0090304,GO:0097159,GO:0140030,GO:1901360,GO:1901363,GO:1901564,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903900,GO:1903902,GO:1990381,GO:1990391,GO:2000058,GO:2000060
Evalue	1.2e-09
EggNOG OGs	COG5272@1\|root,KOG0011@2759\|Eukaryota,38CFS@33154\|Opisthokonta,3BDTC@33208\|Metazoa,3CSSB@33213\|Bilateria,40QXG@6231\|Nematoda,1KVPM@119089\|Chromadorea,40YDM@6236\|Rhabditida
Description	XPC-binding domain
COG category	L
BRITE	ko00000,ko00001,ko03051,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2745	Gcaud2745	Gracilaria caudata M_176_S67 male	gene	NODE_724_length_19053_cov_4.072935 2..304 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2745.t1.CDS1	Gcaud2745.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_724_length_19053_cov_4.072935 2..304 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2745.t1.exon1	Gcaud2745.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_724_length_19053_cov_4.072935 2..304 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2745.t1.start1	Gcaud2745.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_724_length_19053_cov_4.072935 302..304 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2745.t1	Gcaud2745.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_724_length_19053_cov_4.072935 2..304 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_724_length_19053_cov_4.072935:2..304-
coding sequence from alignment at NODE_724_length_19053_cov_4.072935:2..304-

mRNA sequence

>Gcaud2745.t1 ID=Gcaud2745.t1|Name=Gcaud2745.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=101bp
MAIEVTFRTLTGATFKLSAEPTDTVLDIKRKVADSENVSDYASYRLIFKG
KILSDEATISSAGISSTGFVVVMPPKKKPVKPAPTSTPTPAAAPAPAPKP
T

spliced messenger RNA

>Gcaud2745.t1 ID=Gcaud2745.t1|Name=Gcaud2745.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=303bp|location=Sequence derived from alignment at NODE_724_length_19053_cov_4.072935:2..304- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCATCGAAGTCACCTTCCGTACCCTTACAGGCGCCACCTTCAAATT
GTCTGCCGAGCCCACCGACACCGTTCTCGACATCAAGCGCAAGGTGGCCG
ACAGTGAGAATGTGTCTGACTACGCTTCCTATCGTCTTATCTTCAAAGGA
AAGATCCTTTCTGATGAGGCCACTATCTCCTCCGCCGGAATTTCTTCCAC
GGGCTTTGTTGTCGTCATGCCGCCCAAGAAGAAACCAGTTAAACCGGCTC
CGACATCTACTCCCACTCCTGCCGCCGCGCCAGCCCCCGCCCCGAAGCCT
ACC

protein sequence of Gcaud2745.t1

>Gcaud2745.t1 ID=Gcaud2745.t1|Name=Gcaud2745.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=101bp
MAIEVTFRTLTGATFKLSAEPTDTVLDIKRKVADSENVSDYASYRLIFKG
KILSDEATISSAGISSTGFVVVMPPKKKPVKPAPTSTPTPAAAPAPAPKP
T

mRNA from alignment at NODE_724_length_19053_cov_4.072935:2..304-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2745.t1 ID=Gcaud2745.t1|Name=Gcaud2745.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=303bp|location=Sequence derived from alignment at NODE_724_length_19053_cov_4.072935:2..304- (Gracilaria caudata M_176_S67 male)
ATGGCCATCGAAGTCACCTTCCGTACCCTTACAGGCGCCACCTTCAAATT
GTCTGCCGAGCCCACCGACACCGTTCTCGACATCAAGCGCAAGGTGGCCG
ACAGTGAGAATGTGTCTGACTACGCTTCCTATCGTCTTATCTTCAAAGGA
AAGATCCTTTCTGATGAGGCCACTATCTCCTCCGCCGGAATTTCTTCCAC
GGGCTTTGTTGTCGTCATGCCGCCCAAGAAGAAACCAGTTAAACCGGCTC
CGACATCTACTCCCACTCCTGCCGCCGCGCCAGCCCCCGCCCCGAAGCCT
ACC

Coding sequence (CDS) from alignment at NODE_724_length_19053_cov_4.072935:2..304-

>Gcaud2745.t1 ID=Gcaud2745.t1|Name=Gcaud2745.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=303bp|location=Sequence derived from alignment at NODE_724_length_19053_cov_4.072935:2..304- (Gracilaria caudata M_176_S67 male)
ATGGCCATCGAAGTCACCTTCCGTACCCTTACAGGCGCCACCTTCAAATT
GTCTGCCGAGCCCACCGACACCGTTCTCGACATCAAGCGCAAGGTGGCCG
ACAGTGAGAATGTGTCTGACTACGCTTCCTATCGTCTTATCTTCAAAGGA
AAGATCCTTTCTGATGAGGCCACTATCTCCTCCGCCGGAATTTCTTCCAC
GGGCTTTGTTGTCGTCATGCCGCCCAAGAAGAAACCAGTTAAACCGGCTC
CGACATCTACTCCCACTCCTGCCGCCGCGCCAGCCCCCGCCCCGAAGCCT
ACC